Wall clock time and date at job start Mon Mar 30 2020 01:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 H 1.09001 * 109.47117 * 306.53914 * 3 2 1 5 5 C 1.50704 * 109.47642 * 186.53415 * 3 2 1 6 6 H 1.07999 * 119.99829 * 245.67256 * 5 3 2 7 7 C 1.37874 * 119.99924 * 65.65966 * 5 3 2 8 8 N 1.31511 * 120.00218 * 194.18893 * 7 5 3 9 9 Si 1.86799 * 119.99815 * 14.19461 * 7 5 3 10 10 H 1.48508 * 109.47253 * 93.49046 * 9 7 5 11 11 H 1.48503 * 109.47234 * 213.48918 * 9 7 5 12 12 H 1.48494 * 109.47464 * 333.49219 * 9 7 5 13 13 N 1.46899 * 109.47185 * 66.53215 * 3 2 1 14 14 C 1.46895 * 111.00435 * 261.28215 * 13 3 2 15 15 H 1.09006 * 109.47206 * 28.63853 * 14 13 3 16 16 C 1.50695 * 109.47611 * 148.63647 * 14 13 3 17 17 C 1.38059 * 119.57691 * 244.99876 * 16 14 13 18 18 C 1.38846 * 119.32850 * 179.97438 * 17 16 14 19 19 C 1.38334 * 118.50479 * 0.02562 * 18 17 16 20 20 C 1.39093 * 119.09995 * 0.02562 * 19 18 17 21 21 N 1.39008 * 119.70397 * 180.02562 * 20 19 18 22 22 N 1.31951 * 119.57012 * 65.00587 * 16 14 13 23 23 C 1.53001 * 109.47031 * 268.64413 * 14 13 3 24 24 C 1.53000 * 109.47713 * 65.38264 * 23 14 13 25 25 C 1.53005 * 109.47329 * 185.38417 * 23 14 13 26 26 H 1.08997 * 109.47028 * 302.34786 * 1 2 3 27 27 H 1.09001 * 109.47175 * 62.35103 * 1 2 3 28 28 H 1.08998 * 109.47035 * 182.34549 * 1 2 3 29 29 H 1.09000 * 109.47426 * 240.00082 * 2 1 3 30 30 H 1.09001 * 109.47254 * 120.00343 * 2 1 3 31 31 H 0.97001 * 120.00091 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00530 * 137.32535 * 13 3 2 33 33 H 1.07998 * 120.33570 * 0.02781 * 17 16 14 34 34 H 1.07998 * 120.74228 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.45004 * 180.02562 * 19 18 17 36 36 H 0.97006 * 119.99675 * 179.97438 * 21 20 19 37 37 H 0.96997 * 120.00337 * 359.97438 * 21 20 19 38 38 H 1.08998 * 109.46958 * 305.37743 * 23 14 13 39 39 H 1.09000 * 109.46949 * 61.31628 * 24 23 14 40 40 H 1.08992 * 109.47518 * 181.31905 * 24 23 14 41 41 H 1.09002 * 109.46752 * 301.32004 * 24 23 14 42 42 H 1.08998 * 109.47142 * 59.99414 * 25 23 14 43 43 H 1.08994 * 109.47458 * 179.97438 * 25 23 14 44 44 H 1.09000 * 109.46843 * 300.00294 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5843 1.9890 -0.8257 5 6 3.5383 1.4456 -0.1617 6 1 4.1674 1.7994 0.6417 7 6 4.1060 0.9965 -1.3351 8 7 5.3937 0.7341 -1.3844 9 14 3.0460 0.7610 -2.8551 10 1 3.0881 1.9928 -3.6837 11 1 3.5621 -0.3852 -3.6458 12 1 1.6453 0.4884 -2.4445 13 7 1.6833 2.0880 1.2704 14 6 0.4745 2.9094 1.1224 15 1 -0.1534 2.4933 0.3345 16 6 -0.2894 2.9179 2.4214 17 6 -1.5438 2.3440 2.4780 18 6 -2.2428 2.3543 3.6776 19 6 -1.6523 2.9442 4.7808 20 6 -0.3858 3.5045 4.6515 21 7 0.2195 4.1001 5.7520 22 7 0.2493 3.4739 3.4899 23 6 0.8722 4.3405 0.7551 24 6 1.5288 4.3488 -0.6268 25 6 -0.3750 5.2266 0.7325 26 1 -0.3633 0.5498 0.8682 27 1 -0.3633 0.4769 -0.9103 28 1 -0.3633 -1.0268 0.0421 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.7932 0.4186 -2.2101 32 1 2.4520 2.6366 1.6257 33 1 -1.9766 1.8910 1.5984 34 1 -3.2254 1.9116 3.7478 35 1 -2.1677 2.9695 5.7295 36 1 1.1029 4.4918 5.6667 37 1 -0.2413 4.1240 6.6052 38 1 1.5761 4.7229 1.4942 39 1 0.8170 3.9883 -1.3694 40 1 1.8332 5.3646 -0.8783 41 1 2.4040 3.6991 -0.6170 42 1 -0.8428 5.2207 1.7169 43 1 -0.0916 6.2461 0.4713 44 1 -1.0790 4.8441 -0.0065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:08 Heat of formation + Delta-G solvation = 27.148716 kcal Electronic energy + Delta-G solvation = -22830.164381 eV Core-core repulsion = 19781.849141 eV Total energy + Delta-G solvation = -3048.315239 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17197 -37.75429 -34.81507 -34.15114 -32.10651 -31.98235 -30.58795 -29.48555 -27.28669 -26.57508 -24.59733 -22.68303 -22.44948 -21.77198 -19.87618 -19.34981 -17.25888 -17.07311 -16.39856 -15.83622 -15.29818 -14.80548 -14.69752 -14.24778 -14.01970 -13.51103 -13.41723 -12.97409 -12.81047 -12.44849 -12.35263 -12.08165 -11.89438 -11.82369 -11.65305 -11.31666 -10.98481 -10.79957 -10.69699 -10.56544 -10.36715 -10.27670 -10.01308 -9.79973 -9.49010 -9.27714 -9.07204 -9.03672 -8.42237 -7.66365 -7.30536 -6.10410 -4.05698 1.53791 1.73001 3.28132 3.38353 3.41750 3.63646 4.17381 4.42238 4.76679 4.88763 5.17405 5.25308 5.33003 5.35017 5.42080 5.48594 5.61808 5.74663 5.90649 6.00627 6.01592 6.10645 6.11778 6.14920 6.24024 6.30995 6.31841 6.35364 6.47741 6.53342 6.73908 6.76443 6.81695 6.85709 6.98461 7.10130 7.11460 7.40386 7.50943 7.59134 7.70825 8.04012 8.45106 8.55536 8.67209 9.00248 9.55733 11.02493 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.005546 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.540991 B = 5047.473229 C = 5184.455295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C 0.187 3.813 4 H 0.014 0.986 5 C -0.526 4.526 6 H 0.076 0.924 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.858 3.142 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.665 5.665 14 C 0.136 3.864 15 H 0.086 0.914 16 C 0.220 3.780 17 C -0.231 4.231 18 C -0.035 4.035 19 C -0.257 4.257 20 C 0.401 3.599 21 N -0.857 5.857 22 N -0.526 5.526 23 C -0.110 4.110 24 C -0.162 4.162 25 C -0.140 4.140 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.346 0.654 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.402 0.598 37 H 0.403 0.597 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.894 6.453 8.910 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C 0.079 3.921 4 H 0.032 0.968 5 C -0.564 4.564 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.685 3.315 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.296 5.296 14 C 0.024 3.976 15 H 0.104 0.896 16 C 0.080 3.920 17 C -0.254 4.254 18 C -0.061 4.061 19 C -0.282 4.282 20 C 0.164 3.836 21 N -0.401 5.401 22 N -0.244 5.244 23 C -0.131 4.131 24 C -0.220 4.220 25 C -0.199 4.199 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.231 0.769 37 H 0.232 0.768 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.256 6.164 8.941 17.921 hybrid contribution -0.785 0.275 -0.948 1.262 sum -15.041 6.440 7.992 18.209 Atomic orbital electron populations 1.21959 0.98880 0.99762 1.00578 1.21864 0.92585 0.99695 1.00659 1.19639 0.95595 0.90639 0.86248 0.96843 1.21181 0.89510 1.43846 1.01875 0.90623 1.24874 0.94655 0.94142 0.98696 1.69974 1.11544 1.44125 1.27178 0.87254 0.82645 0.77891 0.83699 1.20729 1.21441 1.17343 1.60484 1.05522 1.33422 1.30182 1.20705 0.93826 0.92338 0.90696 0.89623 1.20962 0.90207 0.87957 0.92833 1.21636 0.97384 1.07281 0.99107 1.21178 0.98657 0.94260 0.92013 1.21173 0.97094 1.09509 1.00404 1.18349 0.88557 0.89261 0.87406 1.42163 1.22465 1.65866 1.09590 1.66961 1.36347 1.22874 0.98179 1.21737 0.97397 0.95640 0.98294 1.22119 1.02425 1.01956 0.95452 1.21799 0.97874 0.99221 1.00957 0.92243 0.94464 0.94677 0.93323 0.92428 0.92724 0.83360 0.85597 0.85611 0.86088 0.76886 0.76823 0.90361 0.93511 0.93497 0.89137 0.93308 0.93267 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.86 37.16 0.33 -2.51 16 2 C -0.11 -2.41 4.85 -26.73 -0.13 -2.54 16 3 C 0.19 4.23 0.57 -68.87 -0.04 4.19 16 4 H 0.01 0.32 4.14 -51.93 -0.22 0.10 16 5 C -0.53 -14.13 8.18 -34.44 -0.28 -14.41 16 6 H 0.08 2.23 7.72 -52.49 -0.41 1.82 16 7 C 0.08 2.21 5.34 -17.82 -0.10 2.12 16 8 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 9 Si 0.86 20.80 25.77 -169.99 -4.38 16.42 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.69 5.49 56.52 0.31 -5.38 16 13 N -0.67 -13.49 5.78 -102.17 -0.59 -14.08 16 14 C 0.14 2.35 1.06 -68.87 -0.07 2.27 16 15 H 0.09 1.49 5.79 -51.93 -0.30 1.19 16 16 C 0.22 3.56 4.19 -82.61 -0.35 3.22 16 17 C -0.23 -3.31 8.99 -39.42 -0.35 -3.66 16 18 C -0.04 -0.43 10.17 -39.32 -0.40 -0.83 16 19 C -0.26 -3.12 9.94 -39.23 -0.39 -3.51 16 20 C 0.40 5.51 7.75 -155.01 -1.20 4.31 16 21 N -0.86 -8.71 9.07 31.12 0.28 -8.43 16 22 N -0.53 -8.49 10.01 -8.67 -0.09 -8.57 16 23 C -0.11 -1.80 2.26 -90.62 -0.21 -2.00 16 24 C -0.16 -2.83 7.91 37.16 0.29 -2.53 16 25 C -0.14 -1.98 8.87 37.16 0.33 -1.65 16 26 H 0.06 1.05 5.07 -51.93 -0.26 0.78 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 1.13 5.05 -51.93 -0.26 0.86 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.35 7.43 7.54 -39.29 -0.30 7.13 16 33 H 0.13 1.65 7.48 -52.49 -0.39 1.26 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.40 3.97 8.95 -40.82 -0.37 3.60 16 37 H 0.40 2.85 8.82 -40.82 -0.36 2.49 16 38 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 39 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.86 5.36 -51.93 -0.28 1.58 16 42 H 0.05 0.70 7.06 -51.93 -0.37 0.33 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -29.93 335.44 -8.45 -38.38 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -6.94 Total: 14.68 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.56 Total: -17.54 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.38 Total: -56.99 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.38 Total: 16.42 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.93 -8.45 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.529 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds