Wall clock time and date at job start Mon Mar 30 2020 01:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 H 1.09001 * 109.47117 * 306.53914 * 3 2 1 5 5 C 1.50704 * 109.47642 * 186.53415 * 3 2 1 6 6 H 1.07999 * 119.99829 * 245.67256 * 5 3 2 7 7 C 1.37874 * 119.99924 * 65.65966 * 5 3 2 8 8 N 1.31511 * 120.00218 * 194.18893 * 7 5 3 9 9 Si 1.86799 * 119.99815 * 14.19461 * 7 5 3 10 10 H 1.48508 * 109.47253 * 93.49046 * 9 7 5 11 11 H 1.48503 * 109.47234 * 213.48918 * 9 7 5 12 12 H 1.48494 * 109.47464 * 333.49219 * 9 7 5 13 13 N 1.46899 * 109.47185 * 66.53215 * 3 2 1 14 14 C 1.46895 * 111.00435 * 261.28215 * 13 3 2 15 15 H 1.09006 * 109.47206 * 28.63853 * 14 13 3 16 16 C 1.50695 * 109.47611 * 148.63647 * 14 13 3 17 17 C 1.38059 * 119.57691 * 244.99876 * 16 14 13 18 18 C 1.38846 * 119.32850 * 179.97438 * 17 16 14 19 19 C 1.38334 * 118.50479 * 0.02562 * 18 17 16 20 20 C 1.39093 * 119.09995 * 0.02562 * 19 18 17 21 21 N 1.39008 * 119.70397 * 180.02562 * 20 19 18 22 22 N 1.31951 * 119.57012 * 65.00587 * 16 14 13 23 23 C 1.53001 * 109.47031 * 268.64413 * 14 13 3 24 24 C 1.53000 * 109.47713 * 65.38264 * 23 14 13 25 25 C 1.53005 * 109.47329 * 185.38417 * 23 14 13 26 26 H 1.08997 * 109.47028 * 302.34786 * 1 2 3 27 27 H 1.09001 * 109.47175 * 62.35103 * 1 2 3 28 28 H 1.08998 * 109.47035 * 182.34549 * 1 2 3 29 29 H 1.09000 * 109.47426 * 240.00082 * 2 1 3 30 30 H 1.09001 * 109.47254 * 120.00343 * 2 1 3 31 31 H 0.97001 * 120.00091 * 180.02562 * 8 7 5 32 32 H 1.00903 * 111.00530 * 137.32535 * 13 3 2 33 33 H 1.07998 * 120.33570 * 0.02781 * 17 16 14 34 34 H 1.07998 * 120.74228 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.45004 * 180.02562 * 19 18 17 36 36 H 0.97006 * 119.99675 * 179.97438 * 21 20 19 37 37 H 0.96997 * 120.00337 * 359.97438 * 21 20 19 38 38 H 1.08998 * 109.46958 * 305.37743 * 23 14 13 39 39 H 1.09000 * 109.46949 * 61.31628 * 24 23 14 40 40 H 1.08992 * 109.47518 * 181.31905 * 24 23 14 41 41 H 1.09002 * 109.46752 * 301.32004 * 24 23 14 42 42 H 1.08998 * 109.47142 * 59.99414 * 25 23 14 43 43 H 1.08994 * 109.47458 * 179.97438 * 25 23 14 44 44 H 1.09000 * 109.46843 * 300.00294 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5843 1.9890 -0.8257 5 6 3.5383 1.4456 -0.1617 6 1 4.1674 1.7994 0.6417 7 6 4.1060 0.9965 -1.3351 8 7 5.3937 0.7341 -1.3844 9 14 3.0460 0.7610 -2.8551 10 1 3.0881 1.9928 -3.6837 11 1 3.5621 -0.3852 -3.6458 12 1 1.6453 0.4884 -2.4445 13 7 1.6833 2.0880 1.2704 14 6 0.4745 2.9094 1.1224 15 1 -0.1534 2.4933 0.3345 16 6 -0.2894 2.9179 2.4214 17 6 -1.5438 2.3440 2.4780 18 6 -2.2428 2.3543 3.6776 19 6 -1.6523 2.9442 4.7808 20 6 -0.3858 3.5045 4.6515 21 7 0.2195 4.1001 5.7520 22 7 0.2493 3.4739 3.4899 23 6 0.8722 4.3405 0.7551 24 6 1.5288 4.3488 -0.6268 25 6 -0.3750 5.2266 0.7325 26 1 -0.3633 0.5498 0.8682 27 1 -0.3633 0.4769 -0.9103 28 1 -0.3633 -1.0268 0.0421 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.7932 0.4186 -2.2101 32 1 2.4520 2.6366 1.6257 33 1 -1.9766 1.8910 1.5984 34 1 -3.2254 1.9116 3.7478 35 1 -2.1677 2.9695 5.7295 36 1 1.1029 4.4918 5.6667 37 1 -0.2413 4.1240 6.6052 38 1 1.5761 4.7229 1.4942 39 1 0.8170 3.9883 -1.3694 40 1 1.8332 5.3646 -0.8783 41 1 2.4040 3.6991 -0.6170 42 1 -0.8428 5.2207 1.7169 43 1 -0.0916 6.2461 0.4713 44 1 -1.0790 4.8441 -0.0065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:07 Heat of formation + Delta-G solvation = 6.137993 kcal Electronic energy + Delta-G solvation = -22831.075474 eV Core-core repulsion = 19781.849141 eV Total energy + Delta-G solvation = -3049.226333 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25986 -39.16821 -36.29321 -35.23055 -34.09563 -33.08313 -32.07567 -30.68362 -28.90138 -27.86337 -26.03321 -24.18483 -23.69391 -22.94393 -21.40888 -20.91008 -18.93548 -18.13798 -17.63224 -17.13707 -16.69920 -16.21436 -15.91497 -15.54192 -15.40415 -14.98374 -14.79591 -14.68177 -14.04930 -13.85805 -13.70845 -13.60104 -13.34561 -13.09827 -12.92262 -12.83392 -12.64687 -12.42214 -12.23877 -11.95837 -11.82175 -11.56923 -11.49613 -11.43291 -11.13816 -11.01914 -10.58124 -10.40761 -10.13749 -8.91954 -8.60342 -8.27950 -6.26556 0.50561 0.74562 1.34676 1.38722 1.48685 2.37296 2.76807 3.06367 3.10553 3.59985 3.78834 3.91929 4.10214 4.16938 4.38056 4.44086 4.51678 4.54647 4.57899 4.61464 4.69230 4.75873 4.79307 4.85344 4.92514 4.95830 5.04063 5.10765 5.23085 5.27074 5.31368 5.33699 5.42167 5.48940 5.53411 5.57561 5.62106 5.84273 5.89267 6.09263 6.55748 6.56983 6.71575 6.78320 6.92501 7.38909 7.58535 8.88853 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.005546 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.540991 B = 5047.473229 C = 5184.455295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.198 3.802 4 H 0.019 0.981 5 C -0.522 4.522 6 H 0.031 0.969 7 C 0.024 3.976 8 N -0.943 5.943 9 Si 0.919 3.081 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.223 1.223 13 N -0.668 5.668 14 C 0.140 3.860 15 H 0.088 0.912 16 C 0.197 3.803 17 C -0.241 4.241 18 C -0.033 4.033 19 C -0.252 4.252 20 C 0.384 3.616 21 N -0.846 5.846 22 N -0.557 5.557 23 C -0.104 4.104 24 C -0.159 4.159 25 C -0.129 4.129 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.334 0.666 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.402 0.598 37 H 0.418 0.582 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.738 6.693 9.225 21.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.089 3.911 4 H 0.037 0.963 5 C -0.560 4.560 6 H 0.050 0.950 7 C -0.174 4.174 8 N -0.583 5.583 9 Si 0.743 3.257 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.146 1.146 13 N -0.297 5.297 14 C 0.029 3.971 15 H 0.106 0.894 16 C 0.059 3.941 17 C -0.264 4.264 18 C -0.059 4.059 19 C -0.277 4.277 20 C 0.146 3.854 21 N -0.391 5.391 22 N -0.276 5.276 23 C -0.125 4.125 24 C -0.216 4.216 25 C -0.187 4.187 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.170 0.830 36 H 0.231 0.769 37 H 0.250 0.750 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.137 6.419 9.293 21.367 hybrid contribution 0.458 0.261 -0.857 1.006 sum -17.679 6.680 8.436 20.696 Atomic orbital electron populations 1.21858 0.95450 1.01446 1.01510 1.21804 0.95664 0.98413 0.99207 1.19449 0.92450 0.91623 0.87571 0.96301 1.21432 0.91780 1.42345 1.00446 0.95032 1.25685 0.95748 0.94115 1.01902 1.70118 1.13745 1.46364 1.28065 0.86277 0.82176 0.77765 0.79513 1.20151 1.21667 1.14550 1.60475 1.06196 1.34320 1.28725 1.20700 0.92272 0.92087 0.92080 0.89407 1.20742 0.91131 0.89922 0.92330 1.21801 0.96870 1.07233 1.00512 1.21583 0.99769 0.93452 0.91052 1.21563 0.96334 1.07991 1.01787 1.18722 0.89496 0.89817 0.87402 1.42158 1.22456 1.64960 1.09538 1.66855 1.37599 1.23980 0.99167 1.21623 0.98094 0.95828 0.96928 1.22053 1.01144 1.01926 0.96515 1.21680 0.96649 0.99188 1.01210 0.91518 0.93320 0.92649 0.94529 0.94254 0.92753 0.84784 0.84561 0.82223 0.83012 0.76869 0.75030 0.92103 0.92658 0.92191 0.92839 0.93565 0.92225 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 8.86 71.98 0.64 -4.30 16 2 C -0.11 -4.86 4.85 30.59 0.15 -4.72 16 3 C 0.20 9.02 0.57 44.17 0.03 9.05 16 4 H 0.02 0.86 4.14 -2.39 -0.01 0.85 16 5 C -0.52 -29.27 8.18 25.60 0.21 -29.06 16 6 H 0.03 2.00 7.72 -2.91 -0.02 1.97 16 7 C 0.02 1.36 5.34 84.65 0.45 1.81 16 8 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 9 Si 0.92 43.19 25.77 68.60 1.77 44.96 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.22 -9.43 5.49 99.48 0.55 -8.89 16 13 N -0.67 -27.57 5.78 -477.17 -2.76 -30.32 16 14 C 0.14 4.71 1.06 44.17 0.05 4.76 16 15 H 0.09 2.89 5.79 -2.38 -0.01 2.88 16 16 C 0.20 6.13 4.19 42.50 0.18 6.31 16 17 C -0.24 -6.24 8.99 22.37 0.20 -6.04 16 18 C -0.03 -0.69 10.17 22.44 0.23 -0.46 16 19 C -0.25 -5.27 9.94 22.50 0.22 -5.05 16 20 C 0.38 9.81 7.75 133.05 1.03 10.84 16 21 N -0.85 -15.77 9.07 -55.44 -0.50 -16.28 16 22 N -0.56 -17.56 10.01 -181.34 -1.82 -19.37 16 23 C -0.10 -3.35 2.26 -10.79 -0.02 -3.37 16 24 C -0.16 -5.47 7.91 71.98 0.57 -4.90 16 25 C -0.13 -3.39 8.87 71.98 0.64 -2.75 16 26 H 0.07 2.17 5.07 -2.39 -0.01 2.16 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.04 1.65 5.05 -2.39 -0.01 1.64 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.33 15.12 7.54 -89.69 -0.68 14.44 16 33 H 0.14 3.13 7.48 -2.91 -0.02 3.11 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.40 7.60 8.95 -92.70 -0.83 6.77 16 37 H 0.42 4.93 8.82 -92.71 -0.82 4.11 16 38 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 39 H 0.05 1.77 8.00 -2.39 -0.02 1.75 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 2.24 5.36 -2.39 -0.01 2.23 16 42 H 0.05 1.24 7.06 -2.39 -0.02 1.22 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -67.51 335.44 0.10 -67.42 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -1.46 Total: 40.08 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 4.56 Total: -27.87 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -4.78 Total: -124.58 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.77 Total: 44.96 kcal Total: -67.51 0.10 -67.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.554 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds