Wall clock time and date at job start Mon Mar 30 2020 01:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 H 1.08997 * 109.47068 * 57.00753 * 3 2 1 5 5 C 1.50704 * 109.46722 * 177.00810 * 3 2 1 6 6 H 1.08004 * 119.99634 * 119.72014 * 5 3 2 7 7 C 1.37874 * 120.00413 * 299.99609 * 5 3 2 8 8 N 1.31522 * 119.99633 * 359.72940 * 7 5 3 9 9 Si 1.86791 * 120.00437 * 179.72840 * 7 5 3 10 10 H 1.48494 * 109.47191 * 59.99856 * 9 7 5 11 11 H 1.48499 * 109.47501 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47009 * 300.00017 * 9 7 5 13 13 N 1.46903 * 109.46931 * 297.00517 * 3 2 1 14 14 C 1.46894 * 110.99557 * 99.51312 * 13 3 2 15 15 H 1.09006 * 109.47535 * 318.63905 * 14 13 3 16 16 C 1.50700 * 109.47503 * 78.64424 * 14 13 3 17 17 C 1.38062 * 119.57065 * 244.99934 * 16 14 13 18 18 C 1.38844 * 119.32404 * 179.97438 * 17 16 14 19 19 C 1.38343 * 118.50624 * 359.97438 * 18 17 16 20 20 C 1.39097 * 119.09889 * 0.02562 * 19 18 17 21 21 N 1.39006 * 119.70184 * 179.97438 * 20 19 18 22 22 N 1.31945 * 119.56845 * 64.72144 * 16 14 13 23 23 C 1.53003 * 109.46835 * 198.64340 * 14 13 3 24 24 C 1.53002 * 109.47215 * 65.62610 * 23 14 13 25 25 C 1.53005 * 109.47278 * 185.62811 * 23 14 13 26 26 H 1.08990 * 109.47532 * 184.80875 * 1 2 3 27 27 H 1.08995 * 109.47175 * 304.81730 * 1 2 3 28 28 H 1.09006 * 109.46830 * 64.80730 * 1 2 3 29 29 H 1.08995 * 109.47198 * 239.99402 * 2 1 3 30 30 H 1.09009 * 109.46749 * 119.99926 * 2 1 3 31 31 H 0.97001 * 119.99892 * 179.97438 * 8 7 5 32 32 H 1.00897 * 110.99868 * 335.55797 * 13 3 2 33 33 H 1.08000 * 120.33830 * 359.97438 * 17 16 14 34 34 H 1.07996 * 120.74391 * 180.02562 * 18 17 16 35 35 H 1.08002 * 120.44629 * 179.97438 * 19 18 17 36 36 H 0.96996 * 120.00280 * 0.02562 * 21 20 19 37 37 H 0.97001 * 119.99484 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47109 * 305.62700 * 23 14 13 39 39 H 1.09004 * 109.47036 * 62.98250 * 24 23 14 40 40 H 1.09002 * 109.47358 * 182.98143 * 24 23 14 41 41 H 1.08996 * 109.47235 * 302.98507 * 24 23 14 42 42 H 1.08996 * 109.46671 * 59.99993 * 25 23 14 43 43 H 1.09002 * 109.47164 * 179.97438 * 25 23 14 44 44 H 1.09001 * 109.46960 * 299.99981 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6336 1.9715 0.8619 5 6 3.5453 1.4430 0.0742 6 1 4.1248 1.8927 -0.7186 7 6 4.1827 0.8644 1.1511 8 7 3.4769 0.3167 2.1164 9 14 6.0485 0.8583 1.2393 10 1 6.5488 2.2564 1.2352 11 1 6.4829 0.1803 2.4871 12 1 6.5972 0.1327 0.0655 13 7 1.6103 2.1137 -1.2340 14 6 0.4238 2.9460 -0.9947 15 1 -0.2675 2.4139 -0.3411 16 6 0.8401 4.2381 -0.3402 17 6 0.4212 4.5164 0.9456 18 6 0.8082 5.7081 1.5438 19 6 1.6061 6.5795 0.8242 20 6 1.9911 6.2345 -0.4671 21 7 2.7923 7.1010 -1.2016 22 7 1.6048 5.0860 -1.0014 23 6 -0.2645 3.2480 -2.3273 24 6 -0.8111 1.9499 -2.9248 25 6 -1.4167 4.2278 -2.0958 26 1 -0.3634 -1.0239 0.0861 27 1 -0.3633 0.5867 0.8436 28 1 -0.3633 0.4375 -0.9300 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 3.9253 -0.0908 2.8739 32 1 1.4401 1.4442 -1.9694 33 1 -0.2012 3.8144 1.4805 34 1 0.4940 5.9489 2.5486 35 1 1.9251 7.5153 1.2590 36 1 3.0807 7.9417 -0.8132 37 1 3.0635 6.8646 -2.1024 38 1 0.4555 3.6901 -3.0161 39 1 -1.5697 1.5354 -2.2606 40 1 -1.2547 2.1566 -3.8987 41 1 0.0014 1.2327 -3.0405 42 1 -1.0271 5.1526 -1.6703 43 1 -1.9067 4.4433 -3.0453 44 1 -2.1366 3.7858 -1.4070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:10 Heat of formation + Delta-G solvation = 4.404506 kcal Electronic energy + Delta-G solvation = -22887.846552 eV Core-core repulsion = 19838.545049 eV Total energy + Delta-G solvation = -3049.301502 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.22522 -38.99060 -36.42482 -35.26521 -33.91330 -33.06668 -31.86246 -30.22767 -28.80082 -27.83548 -26.14275 -24.42235 -23.67471 -22.97173 -21.53210 -20.58621 -18.35176 -18.16066 -17.67546 -16.93139 -16.70111 -16.68655 -15.78346 -15.51444 -15.35268 -14.96957 -14.79518 -14.42009 -14.12615 -13.86505 -13.59958 -13.40468 -13.13258 -13.11999 -12.92614 -12.85251 -12.62230 -12.52755 -12.20120 -11.95427 -11.69179 -11.61177 -11.59657 -11.50777 -11.23822 -10.91347 -10.39200 -10.38691 -10.07928 -8.79568 -8.60636 -8.03717 -6.12577 0.51321 0.73206 1.38551 1.39711 1.47541 2.44363 2.76088 3.14000 3.21951 3.64992 3.73098 4.03935 4.13386 4.23158 4.37882 4.42639 4.47622 4.52137 4.59452 4.61615 4.73289 4.77020 4.83581 4.90186 4.93131 5.01176 5.09143 5.13820 5.22934 5.26004 5.30257 5.41271 5.47646 5.51997 5.55165 5.64764 5.78117 5.85838 5.94261 6.40034 6.55873 6.71569 6.81340 6.96086 7.03823 7.55623 7.60944 8.99540 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.007690 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.952559 B = 3640.343118 C = 4898.095823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.232 3.768 4 H -0.002 1.002 5 C -0.504 4.504 6 H 0.041 0.959 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.948 3.052 10 H -0.283 1.283 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.141 3.859 15 H 0.047 0.953 16 C 0.199 3.801 17 C -0.253 4.253 18 C -0.040 4.040 19 C -0.255 4.255 20 C 0.381 3.619 21 N -0.843 5.843 22 N -0.538 5.538 23 C -0.082 4.082 24 C -0.146 4.146 25 C -0.133 4.133 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.258 0.742 32 H 0.333 0.667 33 H 0.121 0.879 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.417 0.583 37 H 0.404 0.596 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 10.401 -5.652 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.124 3.876 4 H 0.016 0.984 5 C -0.543 4.543 6 H 0.059 0.941 7 C -0.187 4.187 8 N -0.558 5.558 9 Si 0.775 3.225 10 H -0.209 1.209 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.306 5.306 14 C 0.031 3.969 15 H 0.065 0.935 16 C 0.060 3.940 17 C -0.276 4.276 18 C -0.065 4.065 19 C -0.280 4.280 20 C 0.142 3.858 21 N -0.388 5.388 22 N -0.256 5.256 23 C -0.101 4.101 24 C -0.203 4.203 25 C -0.190 4.190 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.249 0.751 37 H 0.233 0.767 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.386 10.610 -6.232 14.891 hybrid contribution 0.666 -0.474 1.267 1.508 sum -7.719 10.136 -4.965 13.674 Atomic orbital electron populations 1.21881 0.96294 1.00879 1.00923 1.22041 0.94399 1.00539 1.01095 1.18857 0.93174 0.88989 0.86605 0.98365 1.21452 0.93134 1.34776 1.04959 0.94075 1.25582 1.01821 0.95642 0.95626 1.69987 1.36036 1.39631 1.10188 0.85771 0.81654 0.77743 0.77336 1.20855 1.20700 1.19807 1.60515 1.33283 1.27213 1.09554 1.20542 0.90736 0.89412 0.96247 0.93547 1.20865 0.89152 0.93414 0.90593 1.21803 1.08279 1.00295 0.97213 1.21522 0.93249 0.91985 0.99761 1.21534 1.07208 1.04126 0.95086 1.18768 0.89416 0.88265 0.89313 1.42058 1.56045 1.21912 1.18833 1.66885 1.16073 1.03290 1.39358 1.21078 0.96996 0.97059 0.94949 1.21910 1.00757 0.96205 1.01465 1.21707 0.97292 0.98006 1.02034 0.92824 0.94450 0.91894 0.94846 0.91681 0.93255 0.84679 0.86059 0.82840 0.82932 0.75079 0.76730 0.91312 0.92139 0.90629 0.93102 0.94549 0.91051 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.34 8.54 71.98 0.61 -4.73 16 2 C -0.14 -6.68 5.07 30.59 0.16 -6.52 16 3 C 0.23 11.85 1.99 44.17 0.09 11.94 16 4 H 0.00 -0.09 7.10 -2.39 -0.02 -0.11 16 5 C -0.50 -29.27 8.84 25.60 0.23 -29.04 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.01 0.64 5.29 84.65 0.45 1.08 16 8 N -0.92 -53.94 11.31 21.45 0.24 -53.70 16 9 Si 0.95 46.11 29.54 68.60 2.03 48.14 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 13 N -0.67 -29.24 5.84 -477.15 -2.79 -32.02 16 14 C 0.14 5.22 1.15 44.17 0.05 5.27 16 15 H 0.05 1.74 5.61 -2.38 -0.01 1.73 16 16 C 0.20 7.74 3.69 42.50 0.16 7.90 16 17 C -0.25 -9.25 9.45 22.37 0.21 -9.04 16 18 C -0.04 -1.23 10.17 22.44 0.23 -1.00 16 19 C -0.25 -7.49 9.94 22.50 0.22 -7.26 16 20 C 0.38 12.51 7.75 133.05 1.03 13.54 16 21 N -0.84 -20.41 9.07 -55.44 -0.50 -20.91 16 22 N -0.54 -20.73 10.02 -181.33 -1.82 -22.54 16 23 C -0.08 -2.43 2.48 -10.79 -0.03 -2.46 16 24 C -0.15 -3.63 7.97 71.98 0.57 -3.05 16 25 C -0.13 -3.41 8.86 71.98 0.64 -2.77 16 26 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.43 7.83 -2.39 -0.02 1.41 16 28 H 0.06 2.06 4.62 -2.38 -0.01 2.05 16 29 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 30 H 0.06 3.53 6.01 -2.38 -0.01 3.52 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.33 13.46 5.77 -89.70 -0.52 12.94 16 33 H 0.12 4.29 7.94 -2.91 -0.02 4.26 16 34 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 36 H 0.42 7.11 8.82 -92.71 -0.82 6.29 16 37 H 0.40 9.45 8.95 -92.71 -0.83 8.62 16 38 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 39 H 0.06 1.41 7.47 -2.39 -0.02 1.39 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 1.36 6.21 -2.39 -0.01 1.34 16 42 H 0.04 1.05 7.06 -2.39 -0.02 1.03 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -67.94 342.67 0.63 -67.30 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -1.15 Total: 39.87 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.62 Total: -26.13 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -4.86 Total: -129.18 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -67.94 0.63 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.708 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds