Wall clock time and date at job start Mon Mar 30 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47351 * 2 1 4 4 H 1.09000 * 109.47321 * 305.71922 * 3 2 1 5 5 C 1.50700 * 109.46652 * 65.71617 * 3 2 1 6 6 H 1.08002 * 120.00119 * 34.97526 * 5 3 2 7 7 C 1.37881 * 120.00344 * 214.97506 * 5 3 2 8 8 N 1.31513 * 119.99777 * 5.08499 * 7 5 3 9 9 Si 1.86796 * 120.00212 * 185.08745 * 7 5 3 10 10 H 1.48498 * 109.47305 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47168 * 119.99812 * 9 7 5 12 12 H 1.48494 * 109.47323 * 239.99702 * 9 7 5 13 13 N 1.46500 * 109.47485 * 185.71454 * 3 2 1 14 14 C 1.35378 * 126.49812 * 292.77900 * 13 3 2 15 15 N 1.30851 * 108.78552 * 180.02562 * 14 13 3 16 16 C 1.33291 * 109.09489 * 0.27330 * 15 14 13 17 17 C 1.35258 * 108.05995 * 359.92950 * 16 15 14 18 18 C 1.50611 * 123.74267 * 180.09235 * 17 16 15 19 19 H 1.08993 * 109.70375 * 256.63492 * 18 17 16 20 20 C 1.53000 * 109.70456 * 136.01992 * 18 17 16 21 21 C 1.53004 * 109.46972 * 182.93166 * 20 18 17 22 22 C 1.52996 * 109.47267 * 302.93127 * 20 18 17 23 23 N 1.47347 * 108.26422 * 16.36824 * 18 17 16 24 24 C 1.46951 * 111.40650 * 308.91986 * 23 18 17 25 25 C 1.50915 * 128.91977 * 179.89822 * 16 15 14 26 26 H 1.09002 * 109.46672 * 304.72754 * 1 2 3 27 27 H 1.08996 * 109.47347 * 64.72990 * 1 2 3 28 28 H 1.09005 * 109.47272 * 184.73221 * 1 2 3 29 29 H 1.09007 * 109.46721 * 240.00770 * 2 1 3 30 30 H 1.08994 * 109.47615 * 120.00867 * 2 1 3 31 31 H 0.96998 * 120.00175 * 180.02562 * 8 7 5 32 32 H 1.08003 * 125.61171 * 0.25720 * 14 13 3 33 33 H 1.08994 * 109.46748 * 62.93011 * 20 18 17 34 34 H 1.08999 * 109.47050 * 60.00214 * 21 20 18 35 35 H 1.08997 * 109.46691 * 180.02562 * 21 20 18 36 36 H 1.08998 * 109.46783 * 300.00010 * 21 20 18 37 37 H 1.09001 * 109.47267 * 180.02562 * 22 20 18 38 38 H 1.09007 * 109.47028 * 299.99965 * 22 20 18 39 39 H 1.08997 * 109.47508 * 59.99676 * 22 20 18 40 40 H 1.00893 * 111.02120 * 73.18816 * 23 18 17 41 41 H 1.08999 * 109.43898 * 311.22824 * 24 23 18 42 42 H 1.08995 * 109.43532 * 191.35360 * 24 23 18 43 43 H 1.09004 * 109.78022 * 315.61548 * 25 16 15 44 44 H 1.09000 * 109.78622 * 76.37631 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5956 1.9850 -0.8343 5 6 1.6566 2.1107 1.2951 6 1 1.6400 1.5411 2.2125 7 6 1.3269 3.4495 1.3090 8 7 1.2496 4.1193 0.1799 9 14 0.9900 4.3117 2.9314 10 1 1.1421 3.3439 4.0473 11 1 1.9547 5.4268 3.1091 12 1 -0.3938 4.8503 2.9278 13 7 3.4986 1.4448 -0.1375 14 6 4.3938 0.9916 0.7713 15 7 5.6006 1.1603 0.2944 16 6 5.5183 1.7226 -0.9113 17 6 4.2098 1.9104 -1.1980 18 6 3.7142 2.5236 -2.4812 19 1 3.4079 3.5541 -2.3017 20 6 2.5280 1.7173 -3.0139 21 6 2.0754 2.3008 -4.3539 22 6 2.9487 0.2593 -3.2086 23 7 4.8138 2.4950 -3.4616 24 6 6.0459 3.0686 -2.9027 25 6 6.6309 2.1132 -1.8532 26 1 -0.3633 0.5855 0.8446 27 1 -0.3634 0.4387 -0.9293 28 1 -0.3634 -1.0242 0.0848 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.0180 5.0612 0.1896 32 1 4.1517 0.5583 1.7305 33 1 1.7058 1.7660 -2.3000 34 1 2.8977 2.2521 -5.0677 35 1 1.2301 1.7266 -4.7331 36 1 1.7757 3.3395 -4.2152 37 1 2.1038 -0.3151 -3.5885 38 1 3.7711 0.2106 -3.9225 39 1 3.2713 -0.1564 -2.2540 40 1 4.9724 1.5579 -3.8003 41 1 5.8202 4.0269 -2.4349 42 1 6.7716 3.2178 -3.7020 43 1 7.4242 2.6149 -1.2991 44 1 7.0285 1.2244 -2.3433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:18 Heat of formation + Delta-G solvation = 39.307178 kcal Electronic energy + Delta-G solvation = -23745.526295 eV Core-core repulsion = 20697.738286 eV Total energy + Delta-G solvation = -3047.788009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42478 -37.51214 -35.87843 -33.93738 -32.20281 -31.20210 -29.16014 -28.51326 -26.77216 -26.51155 -24.08105 -23.68956 -22.28486 -21.34664 -19.64320 -18.91586 -18.49332 -16.94925 -15.69222 -15.48746 -14.76739 -14.75135 -14.29786 -13.95465 -13.64325 -13.40917 -13.19467 -12.99458 -12.88620 -12.37145 -12.08361 -11.97319 -11.83380 -11.61710 -11.49544 -11.26309 -11.16854 -10.92756 -10.82001 -10.67166 -10.57436 -10.36597 -10.32415 -10.21948 -9.80997 -9.33328 -8.98338 -8.72714 -8.22270 -8.13944 -7.10685 -6.44013 -4.54783 3.07980 3.17753 3.20770 3.24044 4.02968 4.09391 4.15772 4.63248 5.03899 5.20839 5.28472 5.39433 5.42917 5.57529 5.66029 5.74898 5.83422 5.93681 5.97665 6.04840 6.06864 6.12183 6.18287 6.22625 6.25931 6.35904 6.38121 6.42264 6.50590 6.54779 6.56029 6.69273 6.75230 6.79088 6.88519 7.00303 7.06623 7.36589 7.48201 7.61733 7.74302 7.76899 8.01306 8.52029 8.58948 9.14180 9.19063 10.62233 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.007934 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.948968 B = 3528.122699 C = 3906.264547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.221 3.779 4 H 0.102 0.898 5 C -0.528 4.528 6 H 0.064 0.936 7 C 0.081 3.919 8 N -0.868 5.868 9 Si 0.898 3.102 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.392 5.392 14 C 0.169 3.831 15 N -0.510 5.510 16 C -0.041 4.041 17 C -0.046 4.046 18 C 0.178 3.822 19 H 0.093 0.907 20 C -0.099 4.099 21 C -0.134 4.134 22 C -0.145 4.145 23 N -0.671 5.671 24 C 0.060 3.940 25 C -0.060 4.060 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.186 0.814 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.337 0.663 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -3.959 -6.879 8.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.161 4.161 3 C 0.124 3.876 4 H 0.120 0.880 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.127 4.127 8 N -0.503 5.503 9 Si 0.725 3.275 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.069 5.069 14 C -0.113 4.113 15 N -0.229 5.229 16 C -0.174 4.174 17 C -0.170 4.170 18 C 0.067 3.933 19 H 0.111 0.889 20 C -0.118 4.118 21 C -0.191 4.191 22 C -0.203 4.203 23 N -0.301 5.301 24 C -0.071 4.071 25 C -0.100 4.100 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.202 0.798 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.973 -3.421 -6.847 7.904 hybrid contribution -0.566 0.097 1.458 1.567 sum 1.407 -3.323 -5.389 6.486 Atomic orbital electron populations 1.21569 0.95316 0.99717 1.02524 1.21833 0.96505 0.97777 0.99963 1.19857 0.73675 0.92913 1.01153 0.88013 1.21155 1.47036 0.94900 0.93552 0.91752 1.25085 0.93220 0.97494 0.96902 1.69867 1.44768 1.09800 1.25834 0.86428 0.78007 0.79739 0.83328 1.19312 1.20620 1.20569 1.46793 1.09865 1.38833 1.11403 1.24429 0.83781 1.05470 0.97646 1.69721 1.23367 1.20008 1.09839 1.20153 0.92517 1.09258 0.95448 1.21667 0.92609 1.08170 0.94510 1.19951 0.90192 0.98998 0.84163 0.88884 1.21434 0.97820 0.94240 0.98307 1.21683 1.00312 1.00487 0.96666 1.21876 1.00508 0.96372 1.01501 1.61043 1.06145 1.26989 1.35898 1.22064 0.91298 0.97932 0.95758 1.20517 0.95539 0.98881 0.95022 0.91158 0.93574 0.94399 0.93877 0.93098 0.92072 0.79752 0.89035 0.92091 0.93764 0.92793 0.93136 0.93173 0.92493 0.84423 0.90984 0.90660 0.91306 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.81 37.16 0.36 -1.97 16 2 C -0.12 -2.33 5.52 -26.73 -0.15 -2.48 16 3 C 0.22 4.86 1.96 -69.08 -0.14 4.73 16 4 H 0.10 2.41 4.02 -51.93 -0.21 2.20 16 5 C -0.53 -12.88 7.06 -34.44 -0.24 -13.12 16 6 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 7 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.87 -22.50 12.77 55.43 0.71 -21.79 16 9 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.39 -8.67 2.46 -108.09 -0.27 -8.93 16 14 C 0.17 3.77 11.84 -89.78 -1.06 2.71 16 15 N -0.51 -11.63 11.24 -10.69 -0.12 -11.75 16 16 C -0.04 -0.87 7.07 -82.92 -0.59 -1.46 16 17 C -0.05 -0.97 4.92 -81.89 -0.40 -1.37 16 18 C 0.18 3.30 2.54 -68.66 -0.17 3.12 16 19 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 20 C -0.10 -1.68 2.44 -90.62 -0.22 -1.90 16 21 C -0.13 -1.97 9.02 37.16 0.34 -1.63 16 22 C -0.15 -2.24 8.21 37.16 0.31 -1.93 16 23 N -0.67 -10.47 5.77 -107.36 -0.62 -11.09 16 24 C 0.06 0.90 6.54 -3.53 -0.02 0.87 16 25 C -0.06 -1.00 6.42 -27.52 -0.18 -1.18 16 26 H 0.07 1.33 7.26 -51.93 -0.38 0.95 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.78 6.23 -51.92 -0.32 0.46 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.19 3.77 8.06 -52.48 -0.42 3.35 16 33 H 0.09 1.79 4.82 -51.93 -0.25 1.54 16 34 H 0.06 0.84 7.57 -51.93 -0.39 0.44 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.70 6.42 -51.93 -0.33 0.36 16 39 H 0.06 1.00 5.63 -51.93 -0.29 0.71 16 40 H 0.34 4.96 6.54 -39.30 -0.26 4.70 16 41 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -26.69 334.10 -9.60 -36.29 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.05 Total: 10.94 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.27 Total: -13.68 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.30 Total: -53.56 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.69 -9.60 -36.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.598 kcal (2) G-P(sol) polarization free energy of solvation -26.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds