Wall clock time and date at job start Mon Mar 30 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47351 * 2 1 4 4 H 1.09000 * 109.47321 * 305.71922 * 3 2 1 5 5 C 1.50700 * 109.46652 * 65.71617 * 3 2 1 6 6 H 1.08002 * 120.00119 * 34.97526 * 5 3 2 7 7 C 1.37881 * 120.00344 * 214.97506 * 5 3 2 8 8 N 1.31513 * 119.99777 * 5.08499 * 7 5 3 9 9 Si 1.86796 * 120.00212 * 185.08745 * 7 5 3 10 10 H 1.48498 * 109.47305 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47168 * 119.99812 * 9 7 5 12 12 H 1.48494 * 109.47323 * 239.99702 * 9 7 5 13 13 N 1.46500 * 109.47485 * 185.71454 * 3 2 1 14 14 C 1.35378 * 126.49812 * 292.77900 * 13 3 2 15 15 N 1.30851 * 108.78552 * 180.02562 * 14 13 3 16 16 C 1.33291 * 109.09489 * 0.27330 * 15 14 13 17 17 C 1.35258 * 108.05995 * 359.92950 * 16 15 14 18 18 C 1.50611 * 123.74267 * 180.09235 * 17 16 15 19 19 H 1.08993 * 109.70375 * 256.63492 * 18 17 16 20 20 C 1.53000 * 109.70456 * 136.01992 * 18 17 16 21 21 C 1.53004 * 109.46972 * 182.93166 * 20 18 17 22 22 C 1.52996 * 109.47267 * 302.93127 * 20 18 17 23 23 N 1.47347 * 108.26422 * 16.36824 * 18 17 16 24 24 C 1.46951 * 111.40650 * 308.91986 * 23 18 17 25 25 C 1.50915 * 128.91977 * 179.89822 * 16 15 14 26 26 H 1.09002 * 109.46672 * 304.72754 * 1 2 3 27 27 H 1.08996 * 109.47347 * 64.72990 * 1 2 3 28 28 H 1.09005 * 109.47272 * 184.73221 * 1 2 3 29 29 H 1.09007 * 109.46721 * 240.00770 * 2 1 3 30 30 H 1.08994 * 109.47615 * 120.00867 * 2 1 3 31 31 H 0.96998 * 120.00175 * 180.02562 * 8 7 5 32 32 H 1.08003 * 125.61171 * 0.25720 * 14 13 3 33 33 H 1.08994 * 109.46748 * 62.93011 * 20 18 17 34 34 H 1.08999 * 109.47050 * 60.00214 * 21 20 18 35 35 H 1.08997 * 109.46691 * 180.02562 * 21 20 18 36 36 H 1.08998 * 109.46783 * 300.00010 * 21 20 18 37 37 H 1.09001 * 109.47267 * 180.02562 * 22 20 18 38 38 H 1.09007 * 109.47028 * 299.99965 * 22 20 18 39 39 H 1.08997 * 109.47508 * 59.99676 * 22 20 18 40 40 H 1.00893 * 111.02120 * 73.18816 * 23 18 17 41 41 H 1.08999 * 109.43898 * 311.22824 * 24 23 18 42 42 H 1.08995 * 109.43532 * 191.35360 * 24 23 18 43 43 H 1.09004 * 109.78022 * 315.61548 * 25 16 15 44 44 H 1.09000 * 109.78622 * 76.37631 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5956 1.9850 -0.8343 5 6 1.6566 2.1107 1.2951 6 1 1.6400 1.5411 2.2125 7 6 1.3269 3.4495 1.3090 8 7 1.2496 4.1193 0.1799 9 14 0.9900 4.3117 2.9314 10 1 1.1421 3.3439 4.0473 11 1 1.9547 5.4268 3.1091 12 1 -0.3938 4.8503 2.9278 13 7 3.4986 1.4448 -0.1375 14 6 4.3938 0.9916 0.7713 15 7 5.6006 1.1603 0.2944 16 6 5.5183 1.7226 -0.9113 17 6 4.2098 1.9104 -1.1980 18 6 3.7142 2.5236 -2.4812 19 1 3.4079 3.5541 -2.3017 20 6 2.5280 1.7173 -3.0139 21 6 2.0754 2.3008 -4.3539 22 6 2.9487 0.2593 -3.2086 23 7 4.8138 2.4950 -3.4616 24 6 6.0459 3.0686 -2.9027 25 6 6.6309 2.1132 -1.8532 26 1 -0.3633 0.5855 0.8446 27 1 -0.3634 0.4387 -0.9293 28 1 -0.3634 -1.0242 0.0848 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.0180 5.0612 0.1896 32 1 4.1517 0.5583 1.7305 33 1 1.7058 1.7660 -2.3000 34 1 2.8977 2.2521 -5.0677 35 1 1.2301 1.7266 -4.7331 36 1 1.7757 3.3395 -4.2152 37 1 2.1038 -0.3151 -3.5885 38 1 3.7711 0.2106 -3.9225 39 1 3.2713 -0.1564 -2.2540 40 1 4.9724 1.5579 -3.8003 41 1 5.8202 4.0269 -2.4349 42 1 6.7716 3.2178 -3.7020 43 1 7.4242 2.6149 -1.2991 44 1 7.0285 1.2244 -2.3433 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:18 Heat of formation + Delta-G solvation = 25.769863 kcal Electronic energy + Delta-G solvation = -23746.113317 eV Core-core repulsion = 20697.738286 eV Total energy + Delta-G solvation = -3048.375031 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.06687 -38.92433 -37.50460 -35.37394 -34.01801 -32.77443 -30.59860 -30.02174 -28.31034 -27.95416 -25.76896 -25.18475 -23.67144 -22.92970 -21.21625 -20.45516 -20.05026 -18.74139 -17.38919 -16.89711 -16.53642 -16.18673 -15.88862 -15.49987 -15.17996 -14.85947 -14.57051 -14.50443 -14.36614 -13.85459 -13.62528 -13.51331 -13.11862 -13.03458 -12.94105 -12.91471 -12.78473 -12.39085 -12.35957 -12.18598 -12.03731 -11.89280 -11.73793 -11.60836 -11.46794 -10.98342 -10.84798 -10.44286 -9.94260 -9.48952 -8.76059 -8.35414 -6.50349 1.29111 1.36477 1.44467 1.50867 2.27296 2.35341 2.40996 3.16727 3.30384 3.76842 3.91670 3.97252 4.08373 4.22537 4.26198 4.29997 4.39254 4.46883 4.52252 4.60291 4.74628 4.79411 4.81465 4.90859 4.94717 4.98808 5.03620 5.07713 5.10026 5.16444 5.19849 5.22022 5.29564 5.34833 5.51627 5.53138 5.56143 5.60798 5.82488 5.97539 6.12687 6.26329 6.52514 6.67051 6.81531 7.22732 7.46112 8.69756 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.007934 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.948968 B = 3528.122699 C = 3906.264547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 C 0.225 3.775 4 H 0.087 0.913 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.039 3.961 8 N -0.894 5.894 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.397 5.397 14 C 0.149 3.851 15 N -0.528 5.528 16 C -0.057 4.057 17 C -0.057 4.057 18 C 0.185 3.815 19 H 0.057 0.943 20 C -0.094 4.094 21 C -0.126 4.126 22 C -0.136 4.136 23 N -0.658 5.658 24 C 0.064 3.936 25 C -0.057 4.057 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.268 0.732 32 H 0.194 0.806 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.347 0.653 41 H 0.053 0.947 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -4.855 -8.284 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C 0.128 3.872 4 H 0.105 0.895 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.166 4.166 8 N -0.530 5.530 9 Si 0.774 3.226 10 H -0.189 1.189 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.074 5.074 14 C -0.133 4.133 15 N -0.248 5.248 16 C -0.190 4.190 17 C -0.180 4.180 18 C 0.073 3.927 19 H 0.075 0.925 20 C -0.113 4.113 21 C -0.183 4.183 22 C -0.193 4.193 23 N -0.288 5.288 24 C -0.066 4.066 25 C -0.096 4.096 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.211 0.789 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.167 0.833 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.403 -4.330 -8.253 9.625 hybrid contribution -0.647 0.358 1.894 2.034 sum 1.756 -3.972 -6.358 7.700 Atomic orbital electron populations 1.21508 0.94016 1.01277 1.01696 1.21771 0.97552 0.95820 1.00290 1.19770 0.73582 0.94389 0.99468 0.89535 1.21379 1.46605 0.95063 0.94321 0.92278 1.25695 0.93513 0.98246 0.99128 1.69959 1.46141 1.09814 1.27079 0.85646 0.77815 0.78470 0.80635 1.18906 1.21647 1.19762 1.46659 1.09813 1.39032 1.11854 1.24706 0.84041 1.06293 0.98249 1.69730 1.23523 1.20719 1.10819 1.20924 0.93975 1.08598 0.95457 1.22177 0.92828 1.07846 0.95107 1.19802 0.91908 0.96919 0.84026 0.92527 1.21322 0.96083 0.95308 0.98601 1.21618 1.01416 0.99730 0.95568 1.21789 1.01799 0.95010 1.00724 1.61014 1.05728 1.27605 1.34439 1.22139 0.91594 0.96453 0.96431 1.20657 0.94329 1.00015 0.94641 0.92979 0.93574 0.91396 0.92921 0.93248 0.92276 0.78893 0.92040 0.90627 0.92091 0.94156 0.91422 0.91282 0.94909 0.83294 0.92786 0.86664 0.90975 0.90144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.81 71.98 0.71 -3.64 16 2 C -0.12 -4.39 5.52 30.59 0.17 -4.22 16 3 C 0.23 10.09 1.96 44.24 0.09 10.18 16 4 H 0.09 4.21 4.02 -2.39 -0.01 4.20 16 5 C -0.54 -26.57 7.06 25.60 0.18 -26.39 16 6 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 7 C 0.04 1.98 5.45 84.66 0.46 2.44 16 8 N -0.89 -47.59 12.77 21.45 0.27 -47.32 16 9 Si 0.95 41.59 29.54 68.60 2.03 43.61 16 10 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.40 -17.80 2.46 -495.90 -1.22 -19.02 16 14 C 0.15 6.73 11.84 180.05 2.13 8.86 16 15 N -0.53 -24.11 11.24 -187.75 -2.11 -26.22 16 16 C -0.06 -2.39 7.07 41.72 0.30 -2.09 16 17 C -0.06 -2.39 4.92 41.21 0.20 -2.19 16 18 C 0.19 6.85 2.54 44.06 0.11 6.96 16 19 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 20 C -0.09 -3.12 2.44 -10.79 -0.03 -3.15 16 21 C -0.13 -3.50 9.02 71.98 0.65 -2.85 16 22 C -0.14 -3.92 8.21 71.98 0.59 -3.33 16 23 N -0.66 -19.23 5.77 -493.58 -2.85 -22.08 16 24 C 0.06 1.77 6.54 86.46 0.57 2.34 16 25 C -0.06 -1.79 6.42 30.09 0.19 -1.60 16 26 H 0.05 1.95 7.26 -2.39 -0.02 1.94 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.88 6.23 -2.38 -0.01 1.87 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 32 H 0.19 8.06 8.06 -2.91 -0.02 8.03 16 33 H 0.06 2.44 4.82 -2.39 -0.01 2.43 16 34 H 0.07 1.87 7.57 -2.39 -0.02 1.85 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.71 6.42 -2.38 -0.02 1.69 16 39 H 0.03 1.10 5.63 -2.39 -0.01 1.09 16 40 H 0.35 9.15 6.54 -89.70 -0.59 8.56 16 41 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 42 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -58.24 334.10 2.84 -55.40 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.40 Total: 34.29 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 6.32 Total: -18.67 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -5.91 Total: -114.64 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -58.24 2.84 -55.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.172 kcal (2) G-P(sol) polarization free energy of solvation -58.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds