Wall clock time and date at job start Mon Mar 30 2020 01:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.08995 * 109.47105 * 55.17344 * 3 2 1 5 5 C 1.50700 * 109.47147 * 175.17379 * 3 2 1 6 6 H 1.08003 * 119.99991 * 114.96560 * 5 3 2 7 7 C 1.37879 * 120.00403 * 294.96570 * 5 3 2 8 8 N 1.31513 * 119.99471 * 352.73045 * 7 5 3 9 9 Si 1.86791 * 120.00397 * 172.72695 * 7 5 3 10 10 H 1.48500 * 109.47124 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47430 * 119.99889 * 9 7 5 12 12 H 1.48503 * 109.47475 * 240.00486 * 9 7 5 13 13 N 1.46501 * 109.46979 * 295.17329 * 3 2 1 14 14 C 1.35380 * 126.50384 * 306.86094 * 13 3 2 15 15 N 1.30837 * 108.78887 * 179.70434 * 14 13 3 16 16 C 1.33295 * 109.09733 * 0.24178 * 15 14 13 17 17 C 1.35248 * 108.05549 * 0.05822 * 16 15 14 18 18 C 1.50619 * 123.74051 * 179.86731 * 17 16 15 19 19 H 1.09000 * 109.70451 * 103.43516 * 18 17 16 20 20 C 1.52997 * 109.73911 * 224.03178 * 18 17 16 21 21 C 1.52996 * 109.47264 * 55.81458 * 20 18 17 22 22 C 1.53005 * 109.46892 * 175.81709 * 20 18 17 23 23 N 1.47329 * 108.27049 * 343.74539 * 18 17 16 24 24 C 1.46955 * 111.41555 * 51.04262 * 23 18 17 25 25 C 1.50923 * 128.91753 * 180.20553 * 16 15 14 26 26 H 1.09002 * 109.46576 * 305.31241 * 1 2 3 27 27 H 1.08997 * 109.46901 * 65.30365 * 1 2 3 28 28 H 1.09000 * 109.47083 * 185.30910 * 1 2 3 29 29 H 1.08998 * 109.47093 * 240.00013 * 2 1 3 30 30 H 1.09002 * 109.47585 * 120.00043 * 2 1 3 31 31 H 0.97001 * 119.99582 * 179.97438 * 8 7 5 32 32 H 1.08007 * 125.60423 * 359.97438 * 14 13 3 33 33 H 1.08998 * 109.46621 * 295.81188 * 20 18 17 34 34 H 1.08997 * 109.47033 * 60.00094 * 21 20 18 35 35 H 1.09005 * 109.46534 * 180.02562 * 21 20 18 36 36 H 1.09000 * 109.46897 * 299.99860 * 21 20 18 37 37 H 1.08994 * 109.47314 * 63.46657 * 22 20 18 38 38 H 1.08995 * 109.46760 * 183.46660 * 22 20 18 39 39 H 1.08997 * 109.46793 * 303.46569 * 22 20 18 40 40 H 1.00896 * 110.99798 * 286.78691 * 23 18 17 41 41 H 1.08993 * 109.43556 * 168.64556 * 24 23 18 42 42 H 1.08998 * 109.43550 * 48.76479 * 24 23 18 43 43 H 1.08995 * 109.78000 * 283.53013 * 25 16 15 44 44 H 1.09003 * 109.78008 * 44.28842 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6079 1.9806 0.8436 5 6 3.5423 1.4441 0.1195 6 1 4.1483 1.8155 -0.6936 7 6 4.1432 0.9714 1.2670 8 7 3.4088 0.6533 2.3105 9 14 6.0001 0.7829 1.3393 10 1 6.5913 1.2049 0.0441 11 1 6.5418 1.6313 2.4310 12 1 6.3437 -0.6382 1.5998 13 7 1.6489 2.0987 -1.2501 14 6 1.8844 1.6474 -2.5045 15 7 1.3813 2.4996 -3.3603 16 6 0.8220 3.5090 -2.6932 17 6 0.9837 3.2778 -1.3704 18 6 0.4847 4.2037 -0.2922 19 1 -0.4184 3.7910 0.1575 20 6 1.5624 4.3765 0.7800 21 6 2.8553 4.8711 0.1285 22 6 1.0907 5.3976 1.8172 23 7 0.1821 5.5079 -0.9070 24 6 -0.6837 5.3579 -2.0850 25 6 0.1133 4.7264 -3.2349 26 1 -0.3632 0.5941 0.8386 27 1 -0.3633 0.4294 -0.9337 28 1 -0.3633 -1.0233 0.0951 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8314 0.3204 3.1176 32 1 2.3988 0.7319 -2.7572 33 1 1.7449 3.4196 1.2691 34 1 2.6727 5.8279 -0.3606 35 1 3.6231 4.9938 0.8925 36 1 3.1913 4.1436 -0.6103 37 1 0.2042 5.0172 2.3246 38 1 1.8826 5.5666 2.5468 39 1 0.8492 6.3365 1.3189 40 1 1.0297 6.0023 -1.1418 41 1 -1.0503 6.3371 -2.3926 42 1 -1.5289 4.7169 -1.8346 43 1 0.8443 5.4409 -3.6131 44 1 -0.5642 4.4325 -4.0366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:24 Heat of formation + Delta-G solvation = 42.550755 kcal Electronic energy + Delta-G solvation = -23729.977618 eV Core-core repulsion = 20682.330261 eV Total energy + Delta-G solvation = -3047.647357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68472 -37.64091 -35.88309 -33.99885 -32.23062 -30.95421 -29.33955 -28.67795 -26.97738 -26.53600 -24.00257 -23.50432 -22.42660 -21.67355 -19.64091 -18.89922 -18.63757 -16.83053 -15.96536 -15.52205 -14.88183 -14.61584 -14.46451 -14.02317 -13.58318 -13.32774 -13.31841 -13.06656 -12.83461 -12.31512 -12.20514 -12.09084 -11.78384 -11.67098 -11.59789 -11.41856 -11.08843 -10.96447 -10.88353 -10.51657 -10.40986 -10.38851 -10.29041 -10.06450 -9.84686 -9.60424 -9.09267 -8.63025 -8.41561 -8.27802 -7.33417 -6.37362 -4.43486 2.91512 3.12122 3.22077 3.26676 3.83849 3.90422 4.22374 4.50537 4.95456 5.04579 5.28523 5.31136 5.43724 5.45039 5.58046 5.75920 5.84097 5.90781 5.95244 5.99789 6.03716 6.07682 6.16147 6.18593 6.22446 6.24759 6.40398 6.47339 6.50299 6.61477 6.64021 6.66983 6.76183 6.92402 6.96808 7.02664 7.27223 7.30074 7.46809 7.55236 7.63617 7.67455 7.88316 8.18948 8.63250 8.92814 9.23690 10.69506 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.007649 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.790440 B = 3659.611383 C = 4166.067062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.250 3.750 4 H 0.074 0.926 5 C -0.531 4.531 6 H 0.064 0.936 7 C 0.074 3.926 8 N -0.882 5.882 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.396 5.396 14 C 0.172 3.828 15 N -0.505 5.505 16 C -0.031 4.031 17 C -0.051 4.051 18 C 0.175 3.825 19 H 0.082 0.918 20 C -0.101 4.101 21 C -0.135 4.135 22 C -0.135 4.135 23 N -0.670 5.670 24 C 0.059 3.941 25 C -0.062 4.062 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.267 0.733 32 H 0.191 0.809 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.342 0.658 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 5.968 -2.555 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.151 3.849 4 H 0.092 0.908 5 C -0.569 4.569 6 H 0.083 0.917 7 C -0.130 4.130 8 N -0.518 5.518 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.072 5.072 14 C -0.110 4.110 15 N -0.224 5.224 16 C -0.164 4.164 17 C -0.174 4.174 18 C 0.064 3.936 19 H 0.100 0.900 20 C -0.119 4.119 21 C -0.193 4.193 22 C -0.192 4.192 23 N -0.300 5.300 24 C -0.071 4.071 25 C -0.102 4.102 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.208 0.792 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.162 0.838 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.847 5.845 -2.604 8.667 hybrid contribution 1.774 -0.777 0.253 1.953 sum -4.072 5.068 -2.351 6.913 Atomic orbital electron populations 1.21814 0.98207 1.00111 1.00479 1.21884 0.92859 0.98693 1.02838 1.19658 0.96242 0.89863 0.79165 0.90849 1.21182 0.89489 1.43718 1.02469 0.91733 1.24835 0.98720 0.94622 0.94865 1.69916 1.35680 1.43038 1.03200 0.86434 0.84736 0.78025 0.78362 1.19579 1.20767 1.20658 1.45654 1.36932 1.15355 1.09293 1.24575 1.05192 1.01358 0.79856 1.69772 1.15485 1.03593 1.33521 1.20183 1.07835 0.98589 0.89777 1.21661 1.05884 0.92293 0.97544 1.20009 0.97215 0.85617 0.90801 0.90012 1.21449 0.93932 1.01412 0.95131 1.21713 0.96839 0.99859 1.00853 1.21702 1.00153 0.99340 0.98043 1.61024 1.21732 1.17964 1.29247 1.22080 0.96012 1.00303 0.88699 1.20559 0.98045 0.93047 0.98517 0.93430 0.94186 0.93988 0.93607 0.88677 0.92311 0.79233 0.88174 0.94218 0.93022 0.91729 0.93404 0.93447 0.92070 0.83838 0.90450 0.91082 0.91720 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.74 37.16 0.36 -2.40 16 2 C -0.12 -2.60 5.20 -26.73 -0.14 -2.74 16 3 C 0.25 5.49 1.61 -69.08 -0.11 5.38 16 4 H 0.07 1.73 4.93 -51.93 -0.26 1.47 16 5 C -0.53 -12.81 8.20 -34.44 -0.28 -13.09 16 6 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 7 C 0.07 1.81 5.20 -17.82 -0.09 1.72 16 8 N -0.88 -22.17 12.02 55.43 0.67 -21.51 16 9 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.40 -8.17 1.95 -108.09 -0.21 -8.38 16 14 C 0.17 3.57 11.61 -89.79 -1.04 2.53 16 15 N -0.51 -10.64 11.24 -10.69 -0.12 -10.76 16 16 C -0.03 -0.60 7.07 -82.91 -0.59 -1.19 16 17 C -0.05 -0.99 4.88 -81.89 -0.40 -1.39 16 18 C 0.17 2.95 2.55 -68.67 -0.17 2.78 16 19 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 20 C -0.10 -1.75 2.43 -90.62 -0.22 -1.97 16 21 C -0.14 -2.39 8.65 37.16 0.32 -2.07 16 22 C -0.13 -2.02 9.06 37.16 0.34 -1.68 16 23 N -0.67 -9.64 5.66 -107.37 -0.61 -10.25 16 24 C 0.06 0.78 6.54 -3.53 -0.02 0.76 16 25 C -0.06 -0.93 6.42 -27.51 -0.18 -1.11 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.75 7.90 -51.93 -0.41 0.34 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.94 7.51 -51.93 -0.39 0.55 16 30 H 0.09 2.19 6.68 -51.93 -0.35 1.85 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.19 3.62 7.83 -52.48 -0.41 3.21 16 33 H 0.10 2.08 4.92 -51.93 -0.26 1.82 16 34 H 0.04 0.61 6.46 -51.93 -0.34 0.28 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.34 6.60 -51.93 -0.34 0.99 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.85 7.42 -51.93 -0.39 0.46 16 40 H 0.34 4.90 6.61 -39.29 -0.26 4.64 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -25.40 335.23 -9.63 -35.04 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.16 Total: 10.59 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.23 Total: -14.48 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.27 Total: -50.89 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -25.40 -9.63 -35.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.586 kcal (2) G-P(sol) polarization free energy of solvation -25.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds