Wall clock time and date at job start Mon Mar 30 2020 01:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.08995 * 109.47105 * 55.17344 * 3 2 1 5 5 C 1.50700 * 109.47147 * 175.17379 * 3 2 1 6 6 H 1.08003 * 119.99991 * 114.96560 * 5 3 2 7 7 C 1.37879 * 120.00403 * 294.96570 * 5 3 2 8 8 N 1.31513 * 119.99471 * 352.73045 * 7 5 3 9 9 Si 1.86791 * 120.00397 * 172.72695 * 7 5 3 10 10 H 1.48500 * 109.47124 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47430 * 119.99889 * 9 7 5 12 12 H 1.48503 * 109.47475 * 240.00486 * 9 7 5 13 13 N 1.46501 * 109.46979 * 295.17329 * 3 2 1 14 14 C 1.35380 * 126.50384 * 306.86094 * 13 3 2 15 15 N 1.30837 * 108.78887 * 179.70434 * 14 13 3 16 16 C 1.33295 * 109.09733 * 0.24178 * 15 14 13 17 17 C 1.35248 * 108.05549 * 0.05822 * 16 15 14 18 18 C 1.50619 * 123.74051 * 179.86731 * 17 16 15 19 19 H 1.09000 * 109.70451 * 103.43516 * 18 17 16 20 20 C 1.52997 * 109.73911 * 224.03178 * 18 17 16 21 21 C 1.52996 * 109.47264 * 55.81458 * 20 18 17 22 22 C 1.53005 * 109.46892 * 175.81709 * 20 18 17 23 23 N 1.47329 * 108.27049 * 343.74539 * 18 17 16 24 24 C 1.46955 * 111.41555 * 51.04262 * 23 18 17 25 25 C 1.50923 * 128.91753 * 180.20553 * 16 15 14 26 26 H 1.09002 * 109.46576 * 305.31241 * 1 2 3 27 27 H 1.08997 * 109.46901 * 65.30365 * 1 2 3 28 28 H 1.09000 * 109.47083 * 185.30910 * 1 2 3 29 29 H 1.08998 * 109.47093 * 240.00013 * 2 1 3 30 30 H 1.09002 * 109.47585 * 120.00043 * 2 1 3 31 31 H 0.97001 * 119.99582 * 179.97438 * 8 7 5 32 32 H 1.08007 * 125.60423 * 359.97438 * 14 13 3 33 33 H 1.08998 * 109.46621 * 295.81188 * 20 18 17 34 34 H 1.08997 * 109.47033 * 60.00094 * 21 20 18 35 35 H 1.09005 * 109.46534 * 180.02562 * 21 20 18 36 36 H 1.09000 * 109.46897 * 299.99860 * 21 20 18 37 37 H 1.08994 * 109.47314 * 63.46657 * 22 20 18 38 38 H 1.08995 * 109.46760 * 183.46660 * 22 20 18 39 39 H 1.08997 * 109.46793 * 303.46569 * 22 20 18 40 40 H 1.00896 * 110.99798 * 286.78691 * 23 18 17 41 41 H 1.08993 * 109.43556 * 168.64556 * 24 23 18 42 42 H 1.08998 * 109.43550 * 48.76479 * 24 23 18 43 43 H 1.08995 * 109.78000 * 283.53013 * 25 16 15 44 44 H 1.09003 * 109.78008 * 44.28842 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6079 1.9806 0.8436 5 6 3.5423 1.4441 0.1195 6 1 4.1483 1.8155 -0.6936 7 6 4.1432 0.9714 1.2670 8 7 3.4088 0.6533 2.3105 9 14 6.0001 0.7829 1.3393 10 1 6.5913 1.2049 0.0441 11 1 6.5418 1.6313 2.4310 12 1 6.3437 -0.6382 1.5998 13 7 1.6489 2.0987 -1.2501 14 6 1.8844 1.6474 -2.5045 15 7 1.3813 2.4996 -3.3603 16 6 0.8220 3.5090 -2.6932 17 6 0.9837 3.2778 -1.3704 18 6 0.4847 4.2037 -0.2922 19 1 -0.4184 3.7910 0.1575 20 6 1.5624 4.3765 0.7800 21 6 2.8553 4.8711 0.1285 22 6 1.0907 5.3976 1.8172 23 7 0.1821 5.5079 -0.9070 24 6 -0.6837 5.3579 -2.0850 25 6 0.1133 4.7264 -3.2349 26 1 -0.3632 0.5941 0.8386 27 1 -0.3633 0.4294 -0.9337 28 1 -0.3633 -1.0233 0.0951 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8314 0.3204 3.1176 32 1 2.3988 0.7319 -2.7572 33 1 1.7449 3.4196 1.2691 34 1 2.6727 5.8279 -0.3606 35 1 3.6231 4.9938 0.8925 36 1 3.1913 4.1436 -0.6103 37 1 0.2042 5.0172 2.3246 38 1 1.8826 5.5666 2.5468 39 1 0.8492 6.3365 1.3189 40 1 1.0297 6.0023 -1.1418 41 1 -1.0503 6.3371 -2.3926 42 1 -1.5289 4.7169 -1.8346 43 1 0.8443 5.4409 -3.6131 44 1 -0.5642 4.4325 -4.0366 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:23 Heat of formation + Delta-G solvation = 30.679510 kcal Electronic energy + Delta-G solvation = -23730.492394 eV Core-core repulsion = 20682.330261 eV Total energy + Delta-G solvation = -3048.162133 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.21945 -38.96947 -37.52087 -35.40625 -34.03479 -32.51641 -30.67183 -30.13087 -28.67013 -27.91005 -25.49693 -25.13965 -23.69098 -23.27625 -21.17283 -20.38524 -20.09478 -18.64740 -17.61873 -16.85614 -16.44338 -16.14673 -16.02837 -15.46924 -14.98108 -14.88809 -14.71970 -14.58966 -14.28115 -13.75160 -13.63913 -13.56704 -13.40156 -13.07816 -13.04878 -12.81086 -12.78473 -12.55578 -12.20351 -12.11158 -12.08931 -11.88370 -11.74276 -11.62847 -11.44777 -11.21792 -10.73900 -10.43728 -10.07908 -9.50293 -8.84982 -8.27449 -6.37658 1.33865 1.34882 1.41463 1.49345 2.24585 2.28681 2.43791 3.04073 3.28426 3.71919 3.88997 3.94258 4.07267 4.20287 4.25817 4.30060 4.35986 4.40260 4.50041 4.54953 4.67453 4.72515 4.77746 4.90752 4.93568 4.98559 5.01562 5.10000 5.11055 5.13383 5.16184 5.23603 5.32370 5.35826 5.50275 5.54550 5.62234 5.68080 5.83191 5.97318 6.06571 6.16416 6.45422 6.48502 6.77156 7.30360 7.36219 8.78667 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.007649 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.790440 B = 3659.611383 C = 4166.067062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.261 3.739 4 H 0.060 0.940 5 C -0.533 4.533 6 H 0.045 0.955 7 C 0.041 3.959 8 N -0.900 5.900 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.276 1.276 13 N -0.400 5.400 14 C 0.153 3.847 15 N -0.521 5.521 16 C -0.043 4.043 17 C -0.059 4.059 18 C 0.181 3.819 19 H 0.078 0.922 20 C -0.095 4.095 21 C -0.126 4.126 22 C -0.126 4.126 23 N -0.658 5.658 24 C 0.064 3.936 25 C -0.059 4.059 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.268 0.732 32 H 0.197 0.803 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.345 0.655 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 7.472 -2.825 10.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C 0.161 3.839 4 H 0.077 0.923 5 C -0.572 4.572 6 H 0.063 0.937 7 C -0.162 4.162 8 N -0.537 5.537 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.077 5.077 14 C -0.128 4.128 15 N -0.241 5.241 16 C -0.176 4.176 17 C -0.181 4.181 18 C 0.069 3.931 19 H 0.096 0.904 20 C -0.114 4.114 21 C -0.183 4.183 22 C -0.184 4.184 23 N -0.288 5.288 24 C -0.066 4.066 25 C -0.099 4.099 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.213 0.787 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.165 0.835 41 H 0.131 0.869 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.801 7.356 -2.882 10.424 hybrid contribution 2.069 -1.221 0.286 2.419 sum -4.732 6.135 -2.597 8.171 Atomic orbital electron populations 1.21672 0.96152 1.01383 1.00081 1.21762 0.94635 0.97756 1.01710 1.19371 0.94867 0.90280 0.79369 0.92286 1.21208 0.90683 1.43443 1.01819 0.93688 1.25339 1.01554 0.94579 0.94699 1.69979 1.36705 1.43603 1.03455 0.85688 0.81267 0.78009 0.77814 1.20229 1.20572 1.20170 1.45567 1.37411 1.16005 1.08714 1.24797 1.05951 1.02007 0.80070 1.69789 1.16018 1.04327 1.33921 1.20932 1.07451 0.99310 0.89862 1.22188 1.05392 0.91959 0.98573 1.19957 0.96547 0.86362 0.90192 0.90390 1.21301 0.94065 1.00309 0.95723 1.21609 0.96837 1.00028 0.99874 1.21629 1.00228 0.99133 0.97360 1.61045 1.21832 1.15979 1.29923 1.22184 0.95130 1.02023 0.87221 1.20712 0.98264 0.91457 0.99478 0.93648 0.94580 0.91886 0.93603 0.90770 0.92216 0.78667 0.91907 0.91681 0.93624 0.95160 0.92965 0.93425 0.90370 0.83525 0.86857 0.91286 0.90793 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 9.74 71.98 0.70 -4.27 16 2 C -0.12 -5.11 5.20 30.59 0.16 -4.95 16 3 C 0.26 11.76 1.61 44.24 0.07 11.83 16 4 H 0.06 2.88 4.93 -2.39 -0.01 2.87 16 5 C -0.53 -26.49 8.20 25.60 0.21 -26.28 16 6 H 0.04 2.38 7.82 -2.91 -0.02 2.35 16 7 C 0.04 2.02 5.20 84.66 0.44 2.46 16 8 N -0.90 -45.97 12.02 21.45 0.26 -45.71 16 9 Si 0.95 40.89 29.54 68.60 2.03 42.92 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 13 N -0.40 -16.79 1.95 -495.90 -0.97 -17.75 16 14 C 0.15 6.45 11.61 180.06 2.09 8.54 16 15 N -0.52 -21.88 11.24 -187.75 -2.11 -23.99 16 16 C -0.04 -1.62 7.07 41.72 0.30 -1.33 16 17 C -0.06 -2.26 4.88 41.21 0.20 -2.06 16 18 C 0.18 5.91 2.55 44.06 0.11 6.03 16 19 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 20 C -0.10 -3.26 2.43 -10.79 -0.03 -3.29 16 21 C -0.13 -4.42 8.65 71.98 0.62 -3.80 16 22 C -0.13 -3.55 9.06 71.98 0.65 -2.90 16 23 N -0.66 -17.09 5.66 -493.60 -2.79 -19.88 16 24 C 0.06 1.47 6.54 86.46 0.57 2.03 16 25 C -0.06 -1.64 6.42 30.09 0.19 -1.45 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.04 1.33 7.90 -2.39 -0.02 1.31 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.91 7.51 -2.39 -0.02 1.89 16 30 H 0.07 3.48 6.68 -2.39 -0.02 3.47 16 31 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 32 H 0.20 7.68 7.83 -2.91 -0.02 7.66 16 33 H 0.06 2.67 4.92 -2.39 -0.01 2.66 16 34 H 0.06 1.90 6.46 -2.39 -0.02 1.89 16 35 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.03 1.25 6.60 -2.39 -0.02 1.24 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.93 7.42 -2.39 -0.02 1.92 16 40 H 0.34 8.81 6.61 -89.70 -0.59 8.21 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -54.79 335.23 3.09 -51.70 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.39 Total: 32.14 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 6.29 Total: -19.43 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -5.61 Total: -107.33 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -54.79 3.09 -51.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.379 kcal (2) G-P(sol) polarization free energy of solvation -54.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds