Wall clock time and date at job start Mon Mar 30 2020 01:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 H 1.08999 * 109.47302 * 303.20331 * 3 2 1 5 5 C 1.50704 * 109.46647 * 183.20582 * 3 2 1 6 6 H 1.08005 * 119.99857 * 239.99666 * 5 3 2 7 7 C 1.37872 * 120.00079 * 60.00317 * 5 3 2 8 8 N 1.31519 * 120.00096 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00130 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47466 * 89.99657 * 9 7 5 11 11 H 1.48507 * 109.47424 * 210.00016 * 9 7 5 12 12 H 1.48500 * 109.47272 * 329.99707 * 9 7 5 13 13 N 1.46892 * 109.47036 * 63.20832 * 3 2 1 14 14 C 1.46852 * 111.00157 * 66.79095 * 13 3 2 15 15 C 1.53038 * 109.52050 * 185.83990 * 14 13 3 16 16 C 1.53117 * 109.28114 * 300.81475 * 15 14 13 17 17 N 1.46499 * 109.52853 * 177.56130 * 16 15 14 18 18 N 1.40076 * 126.03659 * 300.10731 * 17 16 15 19 19 C 1.30838 * 108.20536 * 180.02562 * 18 17 16 20 20 C 1.39867 * 108.20295 * 359.77905 * 19 18 17 21 21 C 1.34952 * 126.03602 * 120.12466 * 17 16 15 22 22 C 1.50699 * 126.12733 * 359.94665 * 21 17 16 23 23 C 1.53119 * 109.21103 * 57.62545 * 16 15 14 24 24 C 1.46853 * 110.99916 * 190.99775 * 13 3 2 25 25 H 1.08997 * 109.47291 * 184.77511 * 1 2 3 26 26 H 1.08999 * 109.47283 * 304.78005 * 1 2 3 27 27 H 1.09005 * 109.46571 * 64.77566 * 1 2 3 28 28 H 1.09000 * 109.46916 * 239.99678 * 2 1 3 29 29 H 1.08999 * 109.46473 * 120.00182 * 2 1 3 30 30 H 0.97003 * 119.99936 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.46525 * 65.82359 * 14 13 3 32 32 H 1.09002 * 109.44928 * 305.84486 * 14 13 3 33 33 H 1.09007 * 109.50201 * 180.87971 * 15 14 13 34 34 H 1.08993 * 109.54046 * 60.78093 * 15 14 13 35 35 H 1.09004 * 109.52267 * 297.69222 * 16 15 14 36 36 H 1.08006 * 125.89779 * 179.97438 * 19 18 17 37 37 H 1.07998 * 126.04149 * 180.22934 * 20 19 18 38 38 H 1.09001 * 109.47011 * 89.99788 * 22 21 17 39 39 H 1.09000 * 109.47024 * 329.99933 * 22 21 17 40 40 H 1.09000 * 109.47438 * 209.99978 * 22 21 17 41 41 H 1.08998 * 109.50723 * 62.31945 * 23 16 15 42 42 H 1.08997 * 109.50516 * 182.44284 * 23 16 15 43 43 H 1.09007 * 109.46147 * 294.17486 * 24 13 3 44 44 H 1.08996 * 109.45843 * 54.15364 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6306 1.9726 -0.8599 5 6 3.5450 1.4431 -0.0795 6 1 4.1272 1.8958 0.7095 7 6 4.1785 0.8658 -1.1594 8 7 3.4695 0.3141 -2.1200 9 14 6.0439 0.8672 -1.2582 10 1 6.5750 -0.3576 -0.6079 11 1 6.4642 0.8934 -2.6823 12 1 6.5755 2.0669 -0.5632 13 7 1.6147 2.1122 1.2362 14 6 2.2764 1.5240 2.4079 15 6 1.7034 2.1447 3.6840 16 6 1.9278 3.6590 3.6546 17 7 1.3298 4.2659 4.8464 18 7 -0.0220 4.2103 5.2094 19 6 -0.1713 4.8672 6.3311 20 6 1.0795 5.3571 6.7204 21 6 1.9839 4.9775 5.7881 22 6 3.4584 5.2885 5.8022 23 6 1.2714 4.2413 2.3998 24 6 1.8558 3.5588 1.1608 25 1 -0.3634 -1.0241 0.0855 26 1 -0.3634 0.5862 0.8441 27 1 -0.3633 0.4380 -0.9297 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 3.9153 -0.0924 -2.8796 31 1 3.3472 1.7211 2.3573 32 1 2.1053 0.4476 2.4191 33 1 2.2057 1.7192 4.5529 34 1 0.6352 1.9361 3.7430 35 1 2.9973 3.8685 3.6368 36 1 -1.0996 5.0045 6.8658 37 1 1.2867 5.9377 7.6072 38 1 3.6370 6.2264 5.2764 39 1 4.0039 4.4849 5.3074 40 1 3.8009 5.3789 6.8331 41 1 0.1961 4.0668 2.4371 42 1 1.4653 5.3128 2.3515 43 1 2.9287 3.7463 1.1161 44 1 1.3793 3.9602 0.2664 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:13 Heat of formation + Delta-G solvation = 53.547724 kcal Electronic energy + Delta-G solvation = -22526.245707 eV Core-core repulsion = 19479.075214 eV Total energy + Delta-G solvation = -3047.170492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.19733 -40.02424 -36.72608 -34.29372 -33.38108 -32.81195 -31.79253 -30.62710 -28.21839 -27.76659 -25.58128 -24.35169 -23.95786 -22.33989 -21.20499 -20.65943 -20.26185 -18.25399 -17.77692 -17.06742 -16.23840 -16.04898 -15.75574 -15.27893 -15.19531 -14.94661 -14.63305 -14.42964 -14.16309 -13.90843 -13.67426 -13.55462 -13.36987 -13.22364 -12.96189 -12.90714 -12.75120 -12.53415 -12.21276 -12.16782 -12.09296 -11.87798 -11.59178 -11.52333 -11.32924 -11.12421 -10.97422 -10.42119 -10.10705 -9.35751 -8.91476 -8.01524 -6.24204 1.02550 1.38521 1.40999 1.48489 1.60113 2.00979 2.41179 3.17268 3.31294 3.51723 3.75201 3.79177 3.95161 4.17837 4.25891 4.29091 4.47108 4.49618 4.54922 4.62991 4.72411 4.75272 4.75832 4.82975 4.89611 4.91029 4.92020 4.97682 5.03852 5.10037 5.17852 5.28506 5.30334 5.38342 5.42874 5.51785 5.64416 5.80265 5.86459 6.06768 6.19147 6.22264 6.39306 6.66633 6.89993 6.96273 7.46975 8.93769 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.004839 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.772957 B = 5785.169051 C = 6591.569400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C 0.221 3.779 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.534 5.534 14 C 0.072 3.928 15 C -0.106 4.106 16 C 0.167 3.833 17 N -0.368 5.368 18 N -0.334 5.334 19 C 0.034 3.966 20 C -0.287 4.287 21 C 0.070 3.930 22 C -0.093 4.093 23 C -0.103 4.103 24 C 0.070 3.930 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.030 0.970 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.205 0.795 37 H 0.168 0.832 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 8.926 15.556 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.074 0.926 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.195 1.195 13 N -0.258 5.258 14 C -0.057 4.057 15 C -0.144 4.144 16 C 0.065 3.935 17 N -0.151 5.151 18 N -0.155 5.155 19 C -0.151 4.151 20 C -0.316 4.316 21 C -0.057 4.057 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.059 4.059 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.221 0.779 37 H 0.185 0.815 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.292 8.028 14.402 16.647 hybrid contribution 2.082 0.295 -0.127 2.107 sum -0.209 8.323 14.274 16.525 Atomic orbital electron populations 1.21586 0.96607 0.99843 1.00486 1.21434 0.94202 0.98317 1.00334 1.19028 0.91844 0.91376 0.86370 0.97776 1.21971 0.93733 1.37231 1.05949 0.92632 1.25600 1.01772 0.94960 0.95417 1.70010 1.36395 1.38483 1.10210 0.85758 0.81566 0.78442 0.77062 1.20365 1.21257 1.19458 1.62330 1.57283 1.02502 1.03665 1.21805 0.95881 0.98899 0.89092 1.21790 1.02128 0.93066 0.97462 1.21366 0.97133 0.93323 0.81680 1.48917 1.05480 1.41374 1.19330 1.77336 0.95384 1.25170 1.17583 1.24357 1.00410 0.96520 0.93808 1.21546 0.91958 1.13454 1.04651 1.21785 0.97608 0.95741 0.90584 1.20586 0.86146 1.02890 1.05483 1.21751 1.00868 0.99129 0.92428 1.21790 0.98153 0.89049 0.96910 0.93670 0.92607 0.94911 0.91916 0.94988 0.93014 0.95149 0.91506 0.90969 0.91696 0.87386 0.77887 0.81473 0.89193 0.91203 0.87623 0.91648 0.90781 0.95370 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.85 71.98 0.71 -4.49 16 2 C -0.10 -4.93 5.14 30.59 0.16 -4.77 16 3 C 0.22 10.73 1.72 44.17 0.08 10.81 16 4 H 0.00 0.24 7.97 -2.39 -0.02 0.22 16 5 C -0.55 -28.46 7.24 25.60 0.19 -28.27 16 6 H 0.06 2.83 5.84 -2.91 -0.02 2.82 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -51.10 11.30 21.45 0.24 -50.85 16 9 Si 0.95 42.18 29.54 68.60 2.03 44.20 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.53 -21.77 3.89 -875.47 -3.41 -25.18 16 14 C 0.07 2.68 4.77 86.33 0.41 3.09 16 15 C -0.11 -3.31 5.64 30.65 0.17 -3.14 16 16 C 0.17 4.79 2.98 45.07 0.13 4.92 16 17 N -0.37 -10.31 3.28 -313.92 -1.03 -11.34 16 18 N -0.33 -10.12 12.43 -57.02 -0.71 -10.83 16 19 C 0.03 0.81 12.03 85.24 1.02 1.84 16 20 C -0.29 -6.06 10.72 21.99 0.24 -5.82 16 21 C 0.07 1.61 6.93 41.40 0.29 1.90 16 22 C -0.09 -1.43 9.95 71.24 0.71 -0.72 16 23 C -0.10 -3.20 5.64 30.65 0.17 -3.03 16 24 C 0.07 2.59 5.20 86.33 0.45 3.04 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 2.20 7.56 -2.39 -0.02 2.18 16 27 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 3.35 5.99 -2.39 -0.01 3.34 16 29 H 0.03 1.47 6.33 -2.39 -0.02 1.46 16 30 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.03 1.19 6.33 -2.39 -0.02 1.17 16 32 H 0.07 2.61 6.20 -2.39 -0.01 2.59 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.81 6.67 -2.39 -0.02 2.79 16 36 H 0.20 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.11 7.10 -2.39 -0.02 1.09 16 40 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.03 1.09 7.36 -2.38 -0.02 1.07 16 44 H 0.06 2.38 8.00 -2.39 -0.02 2.36 16 Total: -1.00 -60.83 339.77 3.26 -57.57 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.97 Total: 19.45 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 5.17 Total: -23.01 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -4.90 Total: -98.21 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -60.83 3.26 -57.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.119 kcal (2) G-P(sol) polarization free energy of solvation -60.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds