Wall clock time and date at job start Mon Mar 30 2020 01:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46927 * 2 1 4 4 H 1.08991 * 109.46915 * 177.82385 * 3 2 1 5 5 C 1.50703 * 109.46934 * 297.82369 * 3 2 1 6 6 H 1.07997 * 119.99746 * 120.00522 * 5 3 2 7 7 C 1.37878 * 119.99865 * 299.99562 * 5 3 2 8 8 N 1.31517 * 120.00013 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00053 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46783 * 0.02562 * 9 7 5 11 11 H 1.48490 * 109.47111 * 120.00129 * 9 7 5 12 12 H 1.48497 * 109.46997 * 240.00320 * 9 7 5 13 13 N 1.46896 * 109.47203 * 57.82207 * 3 2 1 14 14 C 1.46850 * 110.99829 * 58.11706 * 13 3 2 15 15 C 1.53033 * 109.52486 * 185.80071 * 14 13 3 16 16 C 1.53123 * 109.31052 * 300.88175 * 15 14 13 17 17 N 1.46499 * 109.52071 * 177.53755 * 16 15 14 18 18 N 1.40088 * 126.03975 * 299.69349 * 17 16 15 19 19 C 1.30835 * 108.20454 * 179.85207 * 18 17 16 20 20 C 1.39873 * 108.20376 * 0.40428 * 19 18 17 21 21 C 1.34950 * 126.03581 * 120.00143 * 17 16 15 22 22 C 1.50704 * 126.12538 * 359.95693 * 21 17 16 23 23 C 1.53122 * 109.15722 * 57.63695 * 16 15 14 24 24 C 1.46838 * 111.00232 * 182.37161 * 13 3 2 25 25 H 1.08998 * 109.46979 * 305.08990 * 1 2 3 26 26 H 1.08998 * 109.47577 * 65.09122 * 1 2 3 27 27 H 1.09002 * 109.46746 * 185.09175 * 1 2 3 28 28 H 1.09004 * 109.46959 * 240.00275 * 2 1 3 29 29 H 1.08991 * 109.47202 * 120.00264 * 2 1 3 30 30 H 0.97003 * 119.99541 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.42404 * 65.80467 * 14 13 3 32 32 H 1.09003 * 109.49646 * 305.84360 * 14 13 3 33 33 H 1.09005 * 109.49854 * 180.92259 * 15 14 13 34 34 H 1.08997 * 109.50057 * 60.84685 * 15 14 13 35 35 H 1.08997 * 109.52510 * 297.66706 * 16 15 14 36 36 H 1.07998 * 125.90007 * 180.14331 * 19 18 17 37 37 H 1.08000 * 126.04073 * 179.73915 * 20 19 18 38 38 H 1.09004 * 109.47093 * 89.99996 * 22 21 17 39 39 H 1.08995 * 109.46870 * 209.99907 * 22 21 17 40 40 H 1.08999 * 109.46991 * 330.00285 * 22 21 17 41 41 H 1.08996 * 109.50330 * 62.28371 * 23 16 15 42 42 H 1.09001 * 109.49915 * 182.36343 * 23 16 15 43 43 H 1.09003 * 109.46544 * 54.14540 * 24 13 3 44 44 H 1.09004 * 109.46576 * 294.17880 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4428 0.0390 5 6 1.5822 2.1372 -1.2566 6 1 0.9583 3.0163 -1.1909 7 6 1.9599 1.6504 -2.4900 8 7 2.7193 0.5796 -2.5700 9 14 1.3929 2.5118 -4.0477 10 1 0.5550 3.6839 -3.6881 11 1 2.5765 2.9681 -4.8197 12 1 0.5971 1.5684 -4.8733 13 7 1.5078 2.1501 1.1722 14 6 1.8974 1.4743 2.4164 15 6 1.2091 2.1516 3.6035 16 6 1.6175 3.6266 3.6514 17 7 0.9156 4.2935 4.7509 18 7 -0.4733 4.4103 4.8915 19 6 -0.7185 5.0659 5.9969 20 6 0.5047 5.3951 6.5902 21 6 1.4929 4.9087 5.8042 22 6 2.9731 5.0315 6.0595 23 6 1.2435 4.2949 2.3255 24 6 1.9316 3.5560 1.1755 25 1 -0.3633 0.5908 0.8409 26 1 -0.3634 0.4328 -0.9320 27 1 -0.3633 -1.0236 0.0912 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.9847 0.2370 -3.4378 31 1 2.9786 1.5366 2.5395 32 1 1.5970 0.4274 2.3713 33 1 1.5114 1.6601 4.5283 34 1 0.1278 2.0769 3.4883 35 1 2.6937 3.7018 3.8075 36 1 -1.6963 5.3139 6.3825 37 1 0.6370 5.9411 7.5126 38 1 3.3473 5.9442 5.5957 39 1 3.1545 5.0690 7.1336 40 1 3.4879 4.1702 5.6338 41 1 0.1628 4.2539 2.1895 42 1 1.5696 5.3349 2.3375 43 1 1.6559 4.0206 0.2288 44 1 3.0126 3.6092 1.3048 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:15 Heat of formation + Delta-G solvation = 57.143624 kcal Electronic energy + Delta-G solvation = -22478.794241 eV Core-core repulsion = 19431.779678 eV Total energy + Delta-G solvation = -3047.014563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.20062 -40.02737 -36.81155 -34.37543 -33.33502 -32.75665 -31.82653 -30.52126 -28.17806 -27.76300 -25.78393 -24.57602 -23.78965 -22.38004 -21.19168 -20.60866 -20.16042 -18.13898 -17.86287 -17.10332 -16.13873 -16.09189 -15.77131 -15.41389 -15.21232 -14.97074 -14.70681 -14.48680 -14.02061 -13.88820 -13.75191 -13.63816 -13.51093 -13.20048 -12.94967 -12.83415 -12.72878 -12.40443 -12.27822 -12.16520 -12.02414 -11.81962 -11.66943 -11.48381 -11.31926 -11.20215 -10.73722 -10.44688 -10.10177 -9.35847 -8.87091 -8.07815 -6.16931 1.02446 1.39682 1.43379 1.53263 1.60037 2.00642 2.43235 3.18931 3.28728 3.49685 3.73713 3.78603 3.93302 4.16507 4.21668 4.29211 4.37182 4.44088 4.55296 4.59891 4.69597 4.73714 4.75927 4.79951 4.84140 4.89886 4.91551 4.98178 5.05225 5.12239 5.13640 5.26627 5.29225 5.35871 5.46742 5.52212 5.74171 5.78473 5.85741 5.89425 6.22809 6.33480 6.42659 6.77401 6.89796 6.96101 7.50823 8.97707 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.028131 B = 0.004288 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.110623 B = 6528.112585 C = 6742.913306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.108 4.108 3 C 0.224 3.776 4 H -0.037 1.037 5 C -0.503 4.503 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.536 5.536 14 C 0.057 3.943 15 C -0.104 4.104 16 C 0.166 3.834 17 N -0.369 5.369 18 N -0.336 5.336 19 C 0.033 3.967 20 C -0.288 4.288 21 C 0.072 3.928 22 C -0.092 4.092 23 C -0.105 4.105 24 C 0.071 3.929 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.259 0.741 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.114 0.886 36 H 0.203 0.797 37 H 0.168 0.832 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 7.559 17.585 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C 0.118 3.882 4 H -0.020 1.020 5 C -0.541 4.541 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.261 5.261 14 C -0.072 4.072 15 C -0.143 4.143 16 C 0.065 3.935 17 N -0.151 5.151 18 N -0.157 5.157 19 C -0.152 4.152 20 C -0.317 4.317 21 C -0.056 4.056 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.057 4.057 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.220 0.780 37 H 0.185 0.815 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.696 6.787 16.299 17.669 hybrid contribution 0.901 0.575 -0.571 1.211 sum 0.204 7.362 15.729 17.367 Atomic orbital electron populations 1.21321 0.96020 0.98555 1.00732 1.21462 0.96145 0.97511 0.99487 1.19015 0.90288 0.91597 0.87325 1.01959 1.21301 1.30396 1.11651 0.90794 0.92737 1.25550 0.95388 0.95672 1.01551 1.70005 1.37343 1.23618 1.24837 0.85649 0.77974 0.78720 0.80160 1.19475 1.20839 1.20930 1.61936 1.60319 1.01730 1.02087 1.22054 0.96750 0.98977 0.89381 1.21745 1.01484 0.93213 0.97813 1.21403 0.95817 0.92225 0.84080 1.48914 1.03997 1.43328 1.18893 1.77363 0.92603 1.24178 1.21541 1.24351 1.00968 0.97161 0.92691 1.21553 0.90734 1.13731 1.05652 1.21809 0.98251 0.96431 0.89096 1.20593 0.85848 1.03598 1.04988 1.21760 1.01437 0.98618 0.92523 1.21836 0.96060 0.89606 0.98237 0.92956 0.95068 0.94430 0.91842 0.95063 0.93130 0.95438 0.90425 0.90322 0.91918 0.86780 0.78047 0.81464 0.89222 0.87636 0.90866 0.92138 0.90867 0.91208 0.95806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 9.50 71.98 0.68 -4.07 16 2 C -0.11 -5.08 5.02 30.60 0.15 -4.93 16 3 C 0.22 11.01 1.76 44.17 0.08 11.09 16 4 H -0.04 -2.04 8.14 -2.39 -0.02 -2.06 16 5 C -0.50 -26.86 6.79 25.60 0.17 -26.68 16 6 H 0.05 2.95 6.53 -2.91 -0.02 2.94 16 7 C 0.02 0.92 5.30 84.65 0.45 1.37 16 8 N -0.92 -51.93 11.30 21.45 0.24 -51.68 16 9 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.54 -21.97 3.57 -875.54 -3.12 -25.10 16 14 C 0.06 1.95 5.17 86.32 0.45 2.40 16 15 C -0.10 -3.07 5.64 30.65 0.17 -2.90 16 16 C 0.17 4.58 2.98 45.07 0.13 4.72 16 17 N -0.37 -10.10 3.28 -313.91 -1.03 -11.13 16 18 N -0.34 -10.26 12.43 -57.02 -0.71 -10.97 16 19 C 0.03 0.80 12.03 85.24 1.03 1.82 16 20 C -0.29 -5.96 10.72 21.99 0.24 -5.72 16 21 C 0.07 1.57 6.93 41.41 0.29 1.86 16 22 C -0.09 -1.27 9.95 71.24 0.71 -0.56 16 23 C -0.10 -3.32 5.63 30.65 0.17 -3.14 16 24 C 0.07 2.69 5.23 86.33 0.45 3.14 16 25 H 0.05 2.21 7.37 -2.39 -0.02 2.19 16 26 H 0.03 1.47 7.47 -2.39 -0.02 1.45 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 3.40 6.01 -2.38 -0.01 3.38 16 29 H 0.03 1.33 6.37 -2.39 -0.02 1.32 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 2.71 6.00 -2.39 -0.01 2.70 16 33 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.11 2.66 6.68 -2.39 -0.02 2.65 16 36 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 0.98 7.10 -2.39 -0.02 0.96 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.07 2.94 6.14 -2.39 -0.01 2.93 16 44 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -63.02 339.60 3.54 -59.48 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.96 Total: 15.44 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 5.17 Total: -21.62 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -4.62 Total: -98.88 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -63.02 3.54 -59.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.628 kcal (2) G-P(sol) polarization free energy of solvation -63.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds