Wall clock time and date at job start Mon Mar 30 2020 02:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 120.00345 * 2 1 4 4 H 1.48498 * 109.47287 * 95.01158 * 3 2 1 5 5 H 1.48497 * 109.47255 * 215.00866 * 3 2 1 6 6 H 1.48501 * 109.47422 * 335.00995 * 3 2 1 7 7 C 1.37878 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00152 * 173.10905 * 7 2 1 9 9 C 1.50707 * 120.00193 * 353.10631 * 7 2 1 10 10 C 1.52999 * 115.55145 * 183.33396 * 9 7 2 11 11 N 1.46900 * 109.46932 * 325.58757 * 10 9 7 12 12 C 1.46906 * 110.99397 * 169.99996 * 11 10 9 13 13 C 1.52997 * 109.46841 * 284.91187 * 12 11 10 14 14 C 1.53003 * 109.47217 * 294.62506 * 13 12 11 15 15 C 1.52997 * 109.47217 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.46926 * 60.00253 * 15 14 13 17 17 C 1.53000 * 109.47390 * 300.00404 * 16 15 14 18 18 C 1.52998 * 109.47203 * 59.99572 * 17 16 15 19 19 C 1.46896 * 111.00023 * 293.94725 * 11 10 9 20 20 C 1.52996 * 117.50515 * 246.87825 * 19 11 10 21 21 C 1.52991 * 60.00168 * 252.50977 * 20 19 11 22 22 C 1.53002 * 117.49473 * 37.66693 * 9 7 2 23 23 C 1.52998 * 117.49858 * 329.01037 * 9 7 2 24 24 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46543 * 85.58797 * 10 9 7 26 26 H 1.08991 * 109.46960 * 205.58191 * 10 9 7 27 27 H 1.08991 * 109.47212 * 44.91542 * 12 11 10 28 28 H 1.09005 * 109.46750 * 164.91582 * 12 11 10 29 29 H 1.08996 * 109.47485 * 54.63021 * 13 12 11 30 30 H 1.08996 * 109.47314 * 300.00620 * 14 13 12 31 31 H 1.09009 * 109.46370 * 60.00752 * 14 13 12 32 32 H 1.09002 * 109.47135 * 300.00749 * 15 14 13 33 33 H 1.08992 * 109.47576 * 180.02562 * 15 14 13 34 34 H 1.08999 * 109.47429 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.46809 * 60.00296 * 16 15 14 36 36 H 1.08996 * 109.46691 * 299.99536 * 17 16 15 37 37 H 1.08997 * 109.47204 * 179.97438 * 17 16 15 38 38 H 1.09006 * 109.46793 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.46977 * 60.00120 * 18 17 16 40 40 H 1.09006 * 115.54571 * 32.58595 * 19 11 10 41 41 H 1.09006 * 117.49524 * 359.97438 * 20 19 11 42 42 H 1.09001 * 117.50049 * 145.01852 * 20 19 11 43 43 H 1.08997 * 117.50054 * 252.51234 * 21 20 19 44 44 H 1.08999 * 117.50517 * 107.48529 * 21 20 19 45 45 H 1.08996 * 117.49976 * 359.97438 * 22 9 7 46 46 H 1.09004 * 117.49990 * 145.02302 * 22 9 7 47 47 H 1.09001 * 117.50322 * 214.98003 * 23 9 7 48 48 H 1.09003 * 117.49891 * 359.96881 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6027 1.9851 1.3947 5 1 3.4898 1.4729 -0.8032 6 1 1.3979 2.6809 -0.5915 7 6 2.0045 -1.1941 -0.0005 8 1 3.0786 -1.1975 -0.1128 9 6 1.2591 -2.4946 0.1555 10 6 2.1301 -3.7508 0.2206 11 7 3.3043 -3.5778 -0.6451 12 6 4.2798 -4.6550 -0.4303 13 6 5.0146 -4.4214 0.8912 14 6 5.8502 -3.1435 0.7912 15 6 6.5845 -2.9096 2.1129 16 6 7.5031 -4.0982 2.4032 17 6 6.6677 -5.3760 2.5031 18 6 5.9334 -5.6099 1.1814 19 6 2.9097 -3.4990 -2.0579 20 6 3.3403 -4.6441 -2.9767 21 6 4.0175 -3.2769 -3.0895 22 6 -0.1035 -2.6144 -0.5300 23 6 -0.0216 -2.4788 0.9925 24 1 -0.4849 0.8401 0.0004 25 1 2.4566 -3.9136 1.2477 26 1 1.5527 -4.6111 -0.1178 27 1 3.7611 -5.6128 -0.3932 28 1 4.9989 -4.6625 -1.2494 29 1 4.2885 -4.3185 1.6975 30 1 6.5763 -3.2464 -0.0151 31 1 5.1955 -2.2967 0.5849 32 1 5.8580 -2.8066 2.9189 33 1 7.1794 -1.9991 2.0419 34 1 8.0267 -3.9314 3.3446 35 1 8.2297 -4.2011 1.5972 36 1 5.9413 -5.2730 3.3091 37 1 7.3222 -6.2228 2.7095 38 1 5.3378 -6.5201 1.2528 39 1 6.6599 -5.7129 0.3754 40 1 1.9422 -3.0353 -2.2506 41 1 3.9167 -5.4558 -2.5328 42 1 2.6560 -4.9341 -3.7740 43 1 3.7788 -2.6674 -3.9610 44 1 5.0392 -3.1892 -2.7199 45 1 -0.4610 -1.7526 -1.0934 46 1 -0.3797 -3.5883 -0.9342 47 1 -0.2438 -3.3634 1.5893 48 1 -0.3247 -1.5278 1.4307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307422042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:53 Heat of formation + Delta-G solvation = 42.796605 kcal Electronic energy + Delta-G solvation = -23287.915414 eV Core-core repulsion = 20343.819062 eV Total energy + Delta-G solvation = -2944.096353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.23126 -37.65838 -36.13857 -33.39593 -31.53655 -30.65116 -30.35873 -26.42377 -25.08933 -24.06356 -22.37000 -21.94512 -21.22687 -20.56123 -19.55105 -19.44768 -18.49942 -16.33060 -15.43696 -15.04295 -15.00851 -14.69881 -14.27159 -13.93641 -13.74515 -13.49129 -13.00481 -12.93635 -12.15330 -12.08781 -11.92464 -11.74867 -11.67805 -11.25837 -11.05468 -10.97079 -10.91222 -10.87026 -10.64477 -10.49412 -10.32922 -10.11020 -10.03163 -9.89603 -9.74622 -9.71504 -9.69839 -9.29759 -8.65929 -8.24015 -7.91312 -7.30233 -5.82605 -3.82319 3.37530 3.44218 3.48248 4.26589 4.52027 4.55581 4.85520 4.96660 4.99738 5.18011 5.30811 5.37199 5.44408 5.51442 5.58284 5.64032 5.71481 5.74432 5.77325 5.81021 5.84614 5.96169 6.00447 6.02288 6.10146 6.18405 6.29242 6.31388 6.32751 6.37193 6.42346 6.44349 6.52471 6.56097 6.60062 6.67419 6.78775 6.82783 6.91665 7.12183 7.28811 7.36974 7.75453 7.85439 7.99775 8.19711 8.29645 8.71600 9.19477 9.71572 11.14745 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.006410 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.120523 B = 4367.112577 C = 5030.404408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.051 3.949 3 Si 0.890 3.110 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.292 1.292 7 C -0.443 4.443 8 H 0.076 0.924 9 C 0.025 3.975 10 C 0.104 3.896 11 N -0.479 5.479 12 C 0.053 3.947 13 C -0.079 4.079 14 C -0.105 4.105 15 C -0.121 4.121 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.113 4.113 19 C 0.059 3.941 20 C -0.239 4.239 21 C -0.178 4.178 22 C -0.195 4.195 23 C -0.191 4.191 24 H 0.254 0.746 25 H 0.062 0.938 26 H 0.012 0.988 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -9.676 0.451 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.149 4.149 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.218 1.218 7 C -0.481 4.481 8 H 0.094 0.906 9 C 0.025 3.975 10 C -0.023 4.023 11 N -0.199 5.199 12 C -0.075 4.075 13 C -0.098 4.098 14 C -0.142 4.142 15 C -0.158 4.158 16 C -0.155 4.155 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.051 4.051 20 C -0.279 4.279 21 C -0.215 4.215 22 C -0.233 4.233 23 C -0.229 4.229 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.128 0.872 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.830 -9.081 0.600 14.146 hybrid contribution -0.095 0.087 -0.245 0.277 sum 10.734 -8.993 0.355 14.008 Atomic orbital electron populations 1.70039 1.05768 1.25579 1.51286 1.25046 0.94824 0.99070 0.95943 0.86628 0.79836 0.83606 0.78024 1.20967 1.19936 1.21813 1.20665 0.94078 0.87840 1.45531 0.90558 1.18983 0.85319 0.92929 1.00300 1.21642 0.89511 0.96002 0.95147 1.61639 1.13035 1.42246 1.03006 1.22270 0.95327 0.92453 0.97465 1.21124 0.96631 0.94627 0.97452 1.21462 0.98243 0.98744 0.95800 1.21557 0.98422 0.97091 0.98764 1.21535 0.97918 0.95327 1.00759 1.21494 0.98787 0.97275 0.97853 1.21564 0.98393 0.97953 0.97221 1.22616 0.98810 0.98497 0.85130 1.23595 1.05804 0.93072 1.05392 1.22940 0.98508 0.98280 1.01821 1.22962 1.06009 0.98644 0.95693 1.22773 1.06798 1.00139 0.93230 0.93523 0.91992 0.96980 0.95616 0.91291 0.90988 0.93201 0.89579 0.92042 0.92520 0.92756 0.92468 0.92105 0.92691 0.92608 0.92407 0.85246 0.89227 0.89734 0.89173 0.89257 0.87216 0.94603 0.94344 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 8.64 55.43 0.48 -24.13 16 2 C 0.05 1.37 5.25 -17.82 -0.09 1.27 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.44 -11.62 8.41 -34.44 -0.29 -11.91 16 8 H 0.08 2.02 7.17 -52.49 -0.38 1.64 16 9 C 0.03 0.61 1.55 -155.66 -0.24 0.37 16 10 C 0.10 2.11 4.92 -3.82 -0.02 2.09 16 11 N -0.48 -8.79 3.01 -226.66 -0.68 -9.47 16 12 C 0.05 0.80 3.01 -3.82 -0.01 0.79 16 13 C -0.08 -1.12 2.24 -90.62 -0.20 -1.33 16 14 C -0.11 -1.54 5.09 -26.73 -0.14 -1.67 16 15 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 16 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 17 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 18 C -0.11 -1.32 5.20 -26.73 -0.14 -1.46 16 19 C 0.06 1.08 5.52 -67.72 -0.37 0.70 16 20 C -0.24 -3.59 9.56 -26.74 -0.26 -3.85 16 21 C -0.18 -2.81 9.91 -26.74 -0.26 -3.07 16 22 C -0.20 -4.79 8.74 -26.69 -0.23 -5.02 16 23 C -0.19 -4.73 9.38 -26.70 -0.25 -4.98 16 24 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.06 1.24 6.52 -51.93 -0.34 0.90 16 26 H 0.01 0.24 7.88 -51.93 -0.41 -0.17 16 27 H 0.03 0.39 7.83 -51.93 -0.41 -0.02 16 28 H 0.07 1.00 5.58 -51.93 -0.29 0.71 16 29 H 0.07 1.14 6.61 -51.93 -0.34 0.79 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.53 7.76 -51.92 -0.40 1.13 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 2.72 6.79 -51.93 -0.35 2.36 16 41 H 0.09 1.26 6.03 -51.93 -0.31 0.95 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.37 7.46 -51.93 -0.39 0.99 16 45 H 0.11 2.99 6.31 -51.93 -0.33 2.66 16 46 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 47 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.11 2.95 6.27 -51.93 -0.33 2.62 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -26.28 355.35 -11.76 -38.03 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.90 Total: 6.60 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -2.99 Total: -32.67 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.20 Total: -33.60 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.28 -11.76 -38.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307422042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.829 kcal (2) G-P(sol) polarization free energy of solvation -26.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds