Wall clock time and date at job start Mon Mar 30 2020 02:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86789 * 120.00345 * 2 1 4 4 H 1.48498 * 109.47287 * 95.01158 * 3 2 1 5 5 H 1.48497 * 109.47255 * 215.00866 * 3 2 1 6 6 H 1.48501 * 109.47422 * 335.00995 * 3 2 1 7 7 C 1.37878 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00152 * 173.10905 * 7 2 1 9 9 C 1.50707 * 120.00193 * 353.10631 * 7 2 1 10 10 C 1.52999 * 115.55145 * 183.33396 * 9 7 2 11 11 N 1.46900 * 109.46932 * 325.58757 * 10 9 7 12 12 C 1.46906 * 110.99397 * 169.99996 * 11 10 9 13 13 C 1.52997 * 109.46841 * 284.91187 * 12 11 10 14 14 C 1.53003 * 109.47217 * 294.62506 * 13 12 11 15 15 C 1.52997 * 109.47217 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.46926 * 60.00253 * 15 14 13 17 17 C 1.53000 * 109.47390 * 300.00404 * 16 15 14 18 18 C 1.52998 * 109.47203 * 59.99572 * 17 16 15 19 19 C 1.46896 * 111.00023 * 293.94725 * 11 10 9 20 20 C 1.52996 * 117.50515 * 246.87825 * 19 11 10 21 21 C 1.52991 * 60.00168 * 252.50977 * 20 19 11 22 22 C 1.53002 * 117.49473 * 37.66693 * 9 7 2 23 23 C 1.52998 * 117.49858 * 329.01037 * 9 7 2 24 24 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46543 * 85.58797 * 10 9 7 26 26 H 1.08991 * 109.46960 * 205.58191 * 10 9 7 27 27 H 1.08991 * 109.47212 * 44.91542 * 12 11 10 28 28 H 1.09005 * 109.46750 * 164.91582 * 12 11 10 29 29 H 1.08996 * 109.47485 * 54.63021 * 13 12 11 30 30 H 1.08996 * 109.47314 * 300.00620 * 14 13 12 31 31 H 1.09009 * 109.46370 * 60.00752 * 14 13 12 32 32 H 1.09002 * 109.47135 * 300.00749 * 15 14 13 33 33 H 1.08992 * 109.47576 * 180.02562 * 15 14 13 34 34 H 1.08999 * 109.47429 * 179.97438 * 16 15 14 35 35 H 1.09002 * 109.46809 * 60.00296 * 16 15 14 36 36 H 1.08996 * 109.46691 * 299.99536 * 17 16 15 37 37 H 1.08997 * 109.47204 * 179.97438 * 17 16 15 38 38 H 1.09006 * 109.46793 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.46977 * 60.00120 * 18 17 16 40 40 H 1.09006 * 115.54571 * 32.58595 * 19 11 10 41 41 H 1.09006 * 117.49524 * 359.97438 * 20 19 11 42 42 H 1.09001 * 117.50049 * 145.01852 * 20 19 11 43 43 H 1.08997 * 117.50054 * 252.51234 * 21 20 19 44 44 H 1.08999 * 117.50517 * 107.48529 * 21 20 19 45 45 H 1.08996 * 117.49976 * 359.97438 * 22 9 7 46 46 H 1.09004 * 117.49990 * 145.02302 * 22 9 7 47 47 H 1.09001 * 117.50322 * 214.98003 * 23 9 7 48 48 H 1.09003 * 117.49891 * 359.96881 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6027 1.9851 1.3947 5 1 3.4898 1.4729 -0.8032 6 1 1.3979 2.6809 -0.5915 7 6 2.0045 -1.1941 -0.0005 8 1 3.0786 -1.1975 -0.1128 9 6 1.2591 -2.4946 0.1555 10 6 2.1301 -3.7508 0.2206 11 7 3.3043 -3.5778 -0.6451 12 6 4.2798 -4.6550 -0.4303 13 6 5.0146 -4.4214 0.8912 14 6 5.8502 -3.1435 0.7912 15 6 6.5845 -2.9096 2.1129 16 6 7.5031 -4.0982 2.4032 17 6 6.6677 -5.3760 2.5031 18 6 5.9334 -5.6099 1.1814 19 6 2.9097 -3.4990 -2.0579 20 6 3.3403 -4.6441 -2.9767 21 6 4.0175 -3.2769 -3.0895 22 6 -0.1035 -2.6144 -0.5300 23 6 -0.0216 -2.4788 0.9925 24 1 -0.4849 0.8401 0.0004 25 1 2.4566 -3.9136 1.2477 26 1 1.5527 -4.6111 -0.1178 27 1 3.7611 -5.6128 -0.3932 28 1 4.9989 -4.6625 -1.2494 29 1 4.2885 -4.3185 1.6975 30 1 6.5763 -3.2464 -0.0151 31 1 5.1955 -2.2967 0.5849 32 1 5.8580 -2.8066 2.9189 33 1 7.1794 -1.9991 2.0419 34 1 8.0267 -3.9314 3.3446 35 1 8.2297 -4.2011 1.5972 36 1 5.9413 -5.2730 3.3091 37 1 7.3222 -6.2228 2.7095 38 1 5.3378 -6.5201 1.2528 39 1 6.6599 -5.7129 0.3754 40 1 1.9422 -3.0353 -2.2506 41 1 3.9167 -5.4558 -2.5328 42 1 2.6560 -4.9341 -3.7740 43 1 3.7788 -2.6674 -3.9610 44 1 5.0392 -3.1892 -2.7199 45 1 -0.4610 -1.7526 -1.0934 46 1 -0.3797 -3.5883 -0.9342 47 1 -0.2438 -3.3634 1.5893 48 1 -0.3247 -1.5278 1.4307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307422042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:52 Heat of formation + Delta-G solvation = 32.937497 kcal Electronic energy + Delta-G solvation = -23288.342937 eV Core-core repulsion = 20343.819062 eV Total energy + Delta-G solvation = -2944.523875 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52025 -38.88819 -37.89436 -34.72144 -33.47502 -31.87035 -31.43515 -28.07586 -26.88049 -25.44864 -23.39706 -23.13386 -22.71388 -22.19656 -21.14861 -20.54509 -20.11618 -17.96712 -17.15165 -16.69051 -16.38046 -15.93943 -15.57819 -15.26638 -14.90501 -14.82745 -14.55945 -14.33408 -13.77323 -13.35623 -13.13926 -12.97903 -12.91466 -12.86673 -12.73868 -12.45638 -12.39771 -12.20170 -12.08264 -11.90325 -11.87954 -11.68003 -11.59733 -11.25444 -11.18002 -11.05273 -10.78519 -10.76598 -10.62553 -10.19850 -9.91938 -8.68480 -7.90155 -5.94409 1.43393 1.45660 1.54238 2.50633 2.91983 3.16265 3.25072 3.81882 3.95087 3.98268 4.01079 4.10150 4.22930 4.27961 4.29083 4.43328 4.54956 4.60466 4.62929 4.64390 4.74099 4.76133 4.77410 4.82161 4.83941 4.89825 4.93118 4.97368 5.07560 5.11267 5.16620 5.24121 5.26985 5.32054 5.35624 5.37491 5.41173 5.43214 5.47253 5.53246 5.69093 5.71576 5.77443 6.05693 6.23678 6.40800 6.54223 6.71405 7.10951 7.61267 9.05054 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.006410 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.120523 B = 4367.112577 C = 5030.404408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.282 1.282 5 H -0.271 1.271 6 H -0.293 1.293 7 C -0.448 4.448 8 H 0.070 0.930 9 C 0.024 3.976 10 C 0.116 3.884 11 N -0.490 5.490 12 C 0.057 3.943 13 C -0.076 4.076 14 C -0.100 4.100 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.107 4.107 19 C 0.027 3.973 20 C -0.210 4.210 21 C -0.171 4.171 22 C -0.190 4.190 23 C -0.196 4.196 24 H 0.251 0.749 25 H 0.063 0.937 26 H 0.016 0.984 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.060 0.940 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.012 -11.497 0.219 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.208 1.208 5 H -0.196 1.196 6 H -0.220 1.220 7 C -0.485 4.485 8 H 0.088 0.912 9 C 0.023 3.977 10 C -0.011 4.011 11 N -0.210 5.210 12 C -0.071 4.071 13 C -0.095 4.095 14 C -0.138 4.138 15 C -0.158 4.158 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.145 4.145 19 C -0.082 4.082 20 C -0.250 4.250 21 C -0.209 4.209 22 C -0.228 4.228 23 C -0.234 4.234 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.107 -10.907 0.364 17.055 hybrid contribution -0.822 0.670 -0.197 1.079 sum 12.285 -10.236 0.167 15.992 Atomic orbital electron populations 1.70192 1.06735 1.25739 1.52244 1.25674 0.95515 1.01790 0.96216 0.85766 0.78743 0.80393 0.77844 1.20849 1.19553 1.21958 1.20851 0.93901 0.88989 1.44802 0.91177 1.19117 0.85449 0.93939 0.99205 1.21403 0.89888 0.93997 0.95858 1.61582 1.12517 1.44052 1.02892 1.22326 0.94733 0.91637 0.98383 1.21081 0.96537 0.95641 0.96192 1.21364 0.97873 0.97573 0.96985 1.21543 0.98467 0.98456 0.97374 1.21504 0.97564 0.94259 1.01718 1.21504 0.98854 0.97873 0.97098 1.21519 0.98159 0.96758 0.98070 1.22439 0.98433 1.01608 0.85765 1.23601 1.04870 0.92601 1.03891 1.22989 0.97996 0.99103 1.00786 1.22760 1.06610 0.98253 0.95183 1.22678 1.07717 0.99605 0.93418 0.93983 0.91874 0.96606 0.94925 0.90119 0.93071 0.92355 0.93455 0.93399 0.92402 0.91551 0.91568 0.92834 0.90637 0.91804 0.91294 0.88764 0.87638 0.88680 0.88774 0.88626 0.90214 0.92777 0.92173 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.03 8.64 21.45 0.19 -51.85 16 2 C 0.01 0.28 5.25 84.65 0.44 0.73 16 3 Si 0.94 44.69 29.54 68.60 2.03 46.71 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.45 -24.01 8.41 25.60 0.22 -23.80 16 8 H 0.07 3.80 7.17 -2.91 -0.02 3.78 16 9 C 0.02 1.15 1.55 -52.93 -0.08 1.07 16 10 C 0.12 4.69 4.92 86.30 0.42 5.12 16 11 N -0.49 -17.71 3.01 -871.01 -2.62 -20.33 16 12 C 0.06 1.61 3.01 86.30 0.26 1.87 16 13 C -0.08 -2.02 2.24 -10.79 -0.02 -2.05 16 14 C -0.10 -2.85 5.09 30.59 0.16 -2.70 16 15 C -0.12 -3.02 5.92 30.59 0.18 -2.83 16 16 C -0.11 -2.19 5.92 30.59 0.18 -2.01 16 17 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 18 C -0.11 -2.18 5.20 30.59 0.16 -2.02 16 19 C 0.03 0.97 5.52 44.91 0.25 1.22 16 20 C -0.21 -5.79 9.56 30.59 0.29 -5.50 16 21 C -0.17 -5.12 9.91 30.59 0.30 -4.81 16 22 C -0.19 -9.51 8.74 30.62 0.27 -9.25 16 23 C -0.20 -9.85 9.38 30.62 0.29 -9.56 16 24 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 25 H 0.06 2.51 6.52 -2.39 -0.02 2.50 16 26 H 0.02 0.62 7.88 -2.39 -0.02 0.60 16 27 H 0.03 0.89 7.83 -2.39 -0.02 0.87 16 28 H 0.08 2.11 5.58 -2.38 -0.01 2.10 16 29 H 0.05 1.59 6.61 -2.39 -0.02 1.57 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.71 7.76 -2.38 -0.02 1.69 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 4.04 6.79 -2.38 -0.02 4.03 16 41 H 0.11 2.59 6.03 -2.38 -0.01 2.57 16 42 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.10 2.74 7.46 -2.39 -0.02 2.72 16 45 H 0.08 4.50 6.31 -2.39 -0.02 4.49 16 46 H 0.05 2.46 8.05 -2.38 -0.02 2.44 16 47 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 48 H 0.08 4.46 6.27 -2.39 -0.01 4.44 16 Total: -1.00 -57.47 355.35 3.98 -53.49 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.90 Total: 28.49 kcal Atomic # 6 Polarization: -60.01 SS G_CDS: 3.49 Total: -56.52 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -2.44 Total: -72.18 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -57.47 3.98 -53.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307422042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.429 kcal (2) G-P(sol) polarization free energy of solvation -57.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds