Wall clock time and date at job start Mon Mar 30 2020 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00268 * 2 1 4 4 H 1.48496 * 109.47411 * 270.00049 * 3 2 1 5 5 H 1.48500 * 109.47171 * 30.00175 * 3 2 1 6 6 H 1.48505 * 109.47039 * 149.99916 * 3 2 1 7 7 C 1.37882 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00527 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99768 * 0.02562 * 7 2 1 10 10 C 1.52997 * 115.55101 * 180.08502 * 9 7 2 11 11 N 1.46898 * 109.46933 * 34.33220 * 10 9 7 12 12 C 1.46895 * 111.00217 * 66.04534 * 11 10 9 13 13 C 1.53001 * 109.47309 * 195.61329 * 12 11 10 14 14 C 1.53002 * 117.50070 * 243.63847 * 13 12 11 15 15 C 1.53000 * 117.50264 * 175.01189 * 13 12 11 16 16 C 1.46905 * 111.00191 * 189.99856 * 11 10 9 17 17 C 1.52998 * 109.46701 * 69.24955 * 16 11 10 18 18 C 1.53011 * 109.46806 * 180.02562 * 17 16 11 19 19 C 1.53001 * 109.46931 * 60.00458 * 18 17 16 20 20 C 1.53002 * 109.46946 * 299.99953 * 19 18 17 21 21 C 1.52998 * 109.47266 * 60.00038 * 20 19 18 22 22 C 1.53003 * 117.49819 * 34.41421 * 9 7 2 23 23 C 1.53003 * 60.03440 * 252.47559 * 22 9 7 24 24 H 0.97001 * 120.00099 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47237 * 154.32477 * 10 9 7 26 26 H 1.08991 * 109.47625 * 274.32663 * 10 9 7 27 27 H 1.09003 * 109.47574 * 315.61259 * 12 11 10 28 28 H 1.08996 * 109.47626 * 75.61537 * 12 11 10 29 29 H 1.09003 * 115.55111 * 29.34624 * 13 12 11 30 30 H 1.08998 * 117.49827 * 359.97438 * 14 13 12 31 31 H 1.08998 * 117.49691 * 145.01931 * 14 13 12 32 32 H 1.09000 * 117.50341 * 214.97856 * 15 13 12 33 33 H 1.09009 * 117.49563 * 0.02562 * 15 13 12 34 34 H 1.08997 * 109.47169 * 189.25315 * 16 11 10 35 35 H 1.08997 * 109.47602 * 300.00094 * 17 16 11 36 36 H 1.08994 * 109.47147 * 60.00511 * 17 16 11 37 37 H 1.08997 * 109.46984 * 300.00310 * 18 17 16 38 38 H 1.08998 * 109.46833 * 179.97438 * 18 17 16 39 39 H 1.08994 * 109.47209 * 180.02562 * 19 18 17 40 40 H 1.08999 * 109.47644 * 59.99635 * 19 18 17 41 41 H 1.09003 * 109.47298 * 299.99863 * 20 19 18 42 42 H 1.08999 * 109.47213 * 180.02562 * 20 19 18 43 43 H 1.09006 * 109.46996 * 180.02562 * 21 20 19 44 44 H 1.08999 * 109.47080 * 60.00468 * 21 20 19 45 45 H 1.08996 * 117.50131 * 359.97438 * 22 9 7 46 46 H 1.09007 * 117.49579 * 144.97799 * 22 9 7 47 47 H 1.08994 * 117.49553 * 107.49831 * 23 22 9 48 48 H 1.08998 * 117.49881 * 252.52525 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.1164 -3.7609 -0.0002 11 7 3.3352 -3.5176 0.7830 12 6 3.0167 -3.3106 2.2019 13 6 4.2211 -2.6861 2.9092 14 6 4.8955 -3.5047 4.0120 15 6 4.0489 -2.2830 4.3751 16 6 4.2973 -4.6149 0.6141 17 6 4.8534 -4.5906 -0.8110 18 6 5.8550 -5.7339 -0.9871 19 6 5.1530 -7.0700 -0.7363 20 6 4.5968 -7.0942 0.6889 21 6 3.5954 -5.9510 0.8650 22 6 -0.0715 -2.5506 -0.7693 23 6 -0.0754 -2.5511 0.7607 24 1 -0.4850 0.8400 0.0004 25 1 1.5575 -4.5844 0.4442 26 1 2.3876 -4.0167 -1.0243 27 1 2.1588 -2.6438 2.2883 28 1 2.7802 -4.2686 2.6648 29 1 4.8588 -2.0586 2.2864 30 1 4.4808 -4.4880 4.2339 31 1 5.9770 -3.4160 4.1147 32 1 4.5734 -1.3907 4.7168 33 1 3.0775 -2.4631 4.8358 34 1 5.1145 -4.4942 1.3252 35 1 4.0362 -4.7113 -1.5221 36 1 5.3531 -3.6386 -0.9899 37 1 6.6723 -5.6136 -0.2761 38 1 6.2508 -5.7169 -2.0026 39 1 5.8666 -7.8844 -0.8613 40 1 4.3357 -7.1903 -1.4473 41 1 5.4142 -6.9740 1.4000 42 1 4.0971 -8.0462 0.8678 43 1 3.1995 -5.9680 1.8804 44 1 2.7780 -6.0713 0.1539 45 1 -0.3968 -1.6404 -1.2731 46 1 -0.3249 -3.4833 -1.2735 47 1 -0.4031 -1.6412 1.2634 48 1 -0.3308 -3.4841 1.2631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307456231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:55 Heat of formation + Delta-G solvation = 34.120086 kcal Electronic energy + Delta-G solvation = -23438.119086 eV Core-core repulsion = 20493.646491 eV Total energy + Delta-G solvation = -2944.472595 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68935 -38.39649 -38.01639 -35.57357 -33.43354 -31.59973 -30.26086 -28.64594 -27.36054 -25.24414 -23.47007 -23.14308 -22.69695 -22.17339 -21.10842 -20.97976 -19.86091 -17.79240 -17.18160 -16.78826 -16.32181 -15.62438 -15.39973 -15.34676 -15.07907 -14.93135 -14.72771 -14.20723 -13.93309 -13.61404 -13.28425 -13.02599 -12.93494 -12.80710 -12.73519 -12.42804 -12.29946 -12.16945 -12.15348 -11.91681 -11.87201 -11.83442 -11.37679 -11.27916 -11.17821 -11.10982 -10.84625 -10.69329 -10.55950 -10.18042 -9.91486 -8.78292 -7.89318 -5.95214 1.43070 1.45495 1.55098 2.50612 2.96978 3.10865 3.23798 3.84204 3.94507 3.95929 3.99970 4.13963 4.17448 4.25572 4.35323 4.39824 4.51333 4.53349 4.61458 4.62602 4.70322 4.71421 4.76879 4.81880 4.83762 4.88326 4.97706 4.99252 5.08563 5.13279 5.20658 5.23853 5.27381 5.31144 5.32311 5.33777 5.37374 5.40663 5.46950 5.52442 5.58376 5.63716 5.73858 6.05010 6.23753 6.44248 6.62788 6.71855 7.09937 7.60883 9.05385 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.015337 B = 0.006442 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.164784 B = 4345.587354 C = 4965.425888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.448 4.448 8 H 0.068 0.932 9 C 0.022 3.978 10 C 0.116 3.884 11 N -0.520 5.520 12 C 0.102 3.898 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.184 4.184 16 C 0.089 3.911 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.108 4.108 21 C -0.147 4.147 22 C -0.195 4.195 23 C -0.190 4.190 24 H 0.251 0.749 25 H 0.016 0.984 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.361 -12.773 3.722 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.485 4.485 8 H 0.086 0.914 9 C 0.021 3.979 10 C -0.012 4.012 11 N -0.241 5.241 12 C -0.026 4.026 13 C -0.166 4.166 14 C -0.200 4.200 15 C -0.221 4.221 16 C -0.019 4.019 17 C -0.146 4.146 18 C -0.148 4.148 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.186 4.186 22 C -0.234 4.234 23 C -0.228 4.228 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.099 0.901 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.447 -12.187 3.548 17.092 hybrid contribution -0.844 0.685 0.175 1.101 sum 10.603 -11.502 3.722 16.080 Atomic orbital electron populations 1.70182 1.06743 1.25714 1.52392 1.25685 0.95553 1.01841 0.96171 0.85719 0.78846 0.80359 0.77626 1.20944 1.21862 1.19446 1.20847 0.93236 0.88917 1.45544 0.91374 1.19172 0.85434 0.94062 0.99186 1.21379 0.89551 0.93690 0.96575 1.61926 1.12421 1.41543 1.08238 1.21418 0.96376 0.97438 0.87403 1.22132 1.00145 1.03639 0.90710 1.23066 0.99267 0.95476 1.02214 1.22961 1.01812 0.99643 0.97731 1.21755 0.94747 0.87778 0.97667 1.21529 0.98623 0.98766 0.95687 1.21485 0.97589 0.93833 1.01936 1.21532 0.99985 0.97444 0.96451 1.21431 0.98331 0.97332 0.97477 1.22166 0.99179 0.96648 1.00632 1.22700 1.07159 0.99169 0.94340 1.22709 1.07340 0.98673 0.94125 0.93977 0.96558 0.92046 0.92437 0.95385 0.88913 0.88612 0.87727 0.88410 0.89338 0.89965 0.93367 0.92736 0.91351 0.91325 0.90500 0.92824 0.91341 0.91619 0.92976 0.93094 0.90121 0.92335 0.90301 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.29 8.59 21.45 0.18 -52.10 16 2 C 0.00 0.25 5.28 84.66 0.45 0.69 16 3 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.45 -24.17 8.13 25.60 0.21 -23.96 16 8 H 0.07 3.72 7.22 -2.91 -0.02 3.70 16 9 C 0.02 1.09 1.47 -52.90 -0.08 1.01 16 10 C 0.12 4.70 3.93 86.30 0.34 5.04 16 11 N -0.52 -19.04 3.30 -871.01 -2.88 -21.92 16 12 C 0.10 3.67 4.80 86.30 0.41 4.08 16 13 C -0.15 -4.67 4.95 -10.79 -0.05 -4.72 16 14 C -0.16 -3.92 10.12 30.60 0.31 -3.61 16 15 C -0.18 -5.07 10.25 30.60 0.31 -4.75 16 16 C 0.09 2.57 2.08 44.91 0.09 2.66 16 17 C -0.11 -2.99 5.21 30.60 0.16 -2.83 16 18 C -0.11 -2.27 5.92 30.60 0.18 -2.09 16 19 C -0.12 -2.18 5.92 30.60 0.18 -2.00 16 20 C -0.11 -2.13 5.92 30.59 0.18 -1.95 16 21 C -0.15 -3.81 4.42 30.59 0.14 -3.67 16 22 C -0.20 -9.91 9.38 30.60 0.29 -9.62 16 23 C -0.19 -9.62 8.85 30.62 0.27 -9.35 16 24 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.02 0.65 6.59 -2.39 -0.02 0.63 16 26 H 0.06 2.48 6.25 -2.39 -0.01 2.46 16 27 H 0.06 2.54 6.24 -2.39 -0.01 2.53 16 28 H 0.03 0.94 6.17 -2.39 -0.01 0.93 16 29 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.10 2.14 8.03 -2.39 -0.02 2.12 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.09 2.45 8.14 -2.38 -0.02 2.44 16 34 H 0.08 2.30 7.15 -2.39 -0.02 2.28 16 35 H 0.05 1.46 6.48 -2.39 -0.02 1.45 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 1.39 6.64 -2.38 -0.02 1.38 16 44 H 0.05 1.46 6.53 -2.39 -0.02 1.44 16 45 H 0.08 4.59 6.29 -2.39 -0.02 4.58 16 46 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 47 H 0.08 4.48 6.28 -2.39 -0.02 4.47 16 48 H 0.05 2.43 8.05 -2.39 -0.02 2.41 16 Total: -1.00 -58.00 353.31 3.63 -54.37 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.90 Total: 27.92 kcal Atomic # 6 Polarization: -58.46 SS G_CDS: 3.39 Total: -55.07 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -2.69 Total: -74.02 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -58.00 3.63 -54.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307456231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.495 kcal (2) G-P(sol) polarization free energy of solvation -58.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds