Wall clock time and date at job start Mon Mar 30 2020 01:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47272 * 2 1 4 4 C 1.52998 * 109.47006 * 120.00144 * 2 1 3 5 5 C 1.53001 * 109.47220 * 174.99896 * 4 2 1 6 6 N 1.46898 * 109.47671 * 173.43351 * 5 4 2 7 7 C 1.46903 * 110.99913 * 73.53822 * 6 5 4 8 8 C 1.50708 * 109.46985 * 285.46643 * 7 6 5 9 9 H 1.07993 * 119.99987 * 356.84484 * 8 7 6 10 10 C 1.37881 * 119.99808 * 176.84630 * 8 7 6 11 11 N 1.31509 * 119.99816 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99987 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46873 * 90.00283 * 12 10 8 14 14 H 1.48502 * 109.47044 * 210.00097 * 12 10 8 15 15 H 1.48501 * 109.47336 * 330.00226 * 12 10 8 16 16 C 1.46895 * 111.00474 * 197.49379 * 6 5 4 17 17 C 1.50702 * 109.47316 * 169.13675 * 16 6 5 18 18 C 1.38337 * 120.44823 * 267.20731 * 17 16 6 19 19 C 1.38843 * 118.50426 * 180.23088 * 18 17 16 20 20 C 1.38069 * 119.32579 * 359.51801 * 19 18 17 21 21 N 1.31940 * 120.85415 * 0.48929 * 20 19 18 22 22 C 1.32424 * 121.62578 * 359.74380 * 21 20 19 23 23 N 1.39003 * 119.70772 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47139 * 299.99705 * 1 2 3 25 25 H 1.09003 * 109.47242 * 60.00212 * 1 2 3 26 26 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46951 * 239.99885 * 2 1 3 28 28 H 1.09005 * 109.47596 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47306 * 300.00197 * 3 2 1 30 30 H 1.08999 * 109.47419 * 59.99652 * 3 2 1 31 31 H 1.08998 * 109.47793 * 55.00098 * 4 2 1 32 32 H 1.09000 * 109.47180 * 294.99648 * 4 2 1 33 33 H 1.09008 * 109.47261 * 53.43594 * 5 4 2 34 34 H 1.09002 * 109.47447 * 293.44209 * 5 4 2 35 35 H 1.08999 * 109.46929 * 45.45720 * 7 6 5 36 36 H 1.08991 * 109.47533 * 165.46427 * 7 6 5 37 37 H 0.96997 * 119.99957 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47012 * 49.13460 * 16 6 5 39 39 H 1.09006 * 109.46892 * 289.13342 * 16 6 5 40 40 H 1.07998 * 120.75174 * 359.95112 * 18 17 16 41 41 H 1.08000 * 120.33544 * 179.74587 * 19 18 17 42 42 H 1.08003 * 119.57129 * 180.25661 * 20 19 18 43 43 H 0.96999 * 120.00034 * 180.02562 * 23 22 21 44 44 H 0.97003 * 119.99997 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1880 6 7 4.0675 -1.3804 2.4542 7 6 3.7767 -2.8166 2.5574 8 6 2.3118 -3.0126 2.8525 9 1 1.6721 -2.1557 3.0037 10 6 1.7884 -4.2859 2.9293 11 7 0.5102 -4.4569 3.1873 12 14 2.8948 -5.7679 2.6670 13 1 3.4690 -6.1935 3.9687 14 1 2.1013 -6.8817 2.0882 15 1 3.9936 -5.4068 1.7356 16 6 5.5056 -1.1223 2.6061 17 6 5.9299 -1.4551 4.0133 18 6 5.9458 -0.4763 4.9908 19 6 6.3483 -0.8264 6.2726 20 6 6.7086 -2.1332 6.5349 21 7 6.6838 -3.0462 5.5827 22 6 6.3105 -2.7507 4.3470 23 7 6.2997 -3.7439 3.3746 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9940 0.1575 1.0250 34 1 3.8490 -1.4903 0.3677 35 1 4.0263 -3.3064 1.6162 36 1 4.3705 -3.2508 3.3617 37 1 0.1419 -5.3526 3.2410 38 1 5.7093 -0.0706 2.4042 39 1 6.0621 -1.7417 1.9027 40 1 5.6559 0.5384 4.7609 41 1 6.3757 -0.0850 7.0573 42 1 7.0184 -2.4108 7.5316 43 1 6.0274 -3.5321 2.4680 44 1 6.5646 -4.6488 3.6026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308589876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:06 Heat of formation + Delta-G solvation = 41.860755 kcal Electronic energy + Delta-G solvation = -22513.427917 eV Core-core repulsion = 19465.750640 eV Total energy + Delta-G solvation = -3047.677277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10242 -37.56190 -35.54234 -34.22106 -32.77413 -31.99879 -29.54552 -28.53797 -27.65504 -26.75760 -24.82106 -22.78086 -22.31000 -21.58820 -19.84608 -19.42921 -17.39939 -17.09330 -16.61212 -15.29541 -15.17673 -14.81762 -14.56008 -14.36473 -13.94251 -13.77012 -13.48849 -13.28111 -12.95177 -12.61819 -12.49716 -12.32594 -12.02503 -11.84276 -11.50419 -11.37880 -11.07446 -10.82925 -10.73131 -10.56853 -10.18013 -10.10061 -10.01986 -9.93857 -9.61173 -9.22507 -9.07670 -8.95835 -8.45926 -7.51161 -7.31642 -6.02149 -3.95766 1.62888 1.86178 3.27233 3.31597 3.35374 3.85711 4.24690 4.42770 4.83905 4.97006 5.14831 5.27762 5.34102 5.36996 5.41158 5.45853 5.50115 5.64471 5.75320 5.88365 5.94665 5.98246 6.09003 6.10540 6.15961 6.19080 6.25697 6.41607 6.44960 6.55690 6.60082 6.69089 6.72687 6.80473 6.92372 6.97739 7.12083 7.47368 7.56226 7.67959 7.77589 7.90533 8.07041 8.58093 8.69449 9.08133 9.59617 11.09957 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.007356 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.655129 B = 3805.738498 C = 5333.863085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.117 4.117 5 C 0.071 3.929 6 N -0.523 5.523 7 C 0.139 3.861 8 C -0.501 4.501 9 H 0.093 0.907 10 C 0.067 3.933 11 N -0.900 5.900 12 Si 0.868 3.132 13 H -0.276 1.276 14 H -0.290 1.290 15 H -0.270 1.270 16 C 0.102 3.898 17 C -0.179 4.179 18 C -0.018 4.018 19 C -0.239 4.239 20 C 0.139 3.861 21 N -0.550 5.550 22 C 0.417 3.583 23 N -0.850 5.850 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.020 0.980 35 H -0.016 1.016 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.149 0.851 43 H 0.409 0.591 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 8.418 -2.126 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.154 4.154 5 C -0.057 4.057 6 N -0.247 5.247 7 C 0.013 3.987 8 C -0.540 4.540 9 H 0.111 0.889 10 C -0.134 4.134 11 N -0.539 5.539 12 Si 0.696 3.304 13 H -0.202 1.202 14 H -0.216 1.216 15 H -0.195 1.195 16 C -0.026 4.026 17 C -0.187 4.187 18 C -0.045 4.045 19 C -0.262 4.262 20 C -0.018 4.018 21 N -0.268 5.268 22 C 0.179 3.821 23 N -0.395 5.395 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.002 0.998 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.042 0.958 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.243 0.757 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 9.763 7.683 -1.537 12.518 hybrid contribution 0.556 -0.809 -1.155 1.515 sum 10.318 6.874 -2.692 12.688 Atomic orbital electron populations 1.21774 0.95619 1.01987 1.00585 1.21153 0.95571 0.95532 0.99458 1.21891 1.00665 0.96858 1.00802 1.22045 0.94330 1.03646 0.95419 1.22021 0.96847 0.97261 0.89581 1.62080 1.10366 1.18475 1.33754 1.20751 0.99379 0.83179 0.95429 1.21217 0.92081 0.94003 1.46653 0.88946 1.24887 0.94774 0.98454 0.95290 1.69877 1.11946 1.22104 1.50001 0.86976 0.81210 0.83447 0.78749 1.20198 1.21576 1.19490 1.20798 0.90387 1.00179 0.91273 1.20012 1.07699 0.92993 0.97969 1.21111 0.92639 0.98894 0.91820 1.21708 1.08659 0.98036 0.97772 1.22244 0.93882 0.88841 0.96856 1.67129 1.22157 1.37463 1.00007 1.18078 0.89594 0.87027 0.87376 1.42695 1.75211 1.10639 1.10986 0.92925 0.93858 0.92316 0.92232 0.92978 0.93842 0.92918 0.87334 0.92023 0.92844 0.96189 0.99811 0.93426 0.92842 0.90759 0.95831 0.85310 0.85629 0.83400 0.75746 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.19 37.16 0.34 -1.81 16 2 C -0.10 -1.52 2.92 -90.63 -0.26 -1.78 16 3 C -0.14 -1.91 8.96 37.15 0.33 -1.58 16 4 C -0.12 -2.22 3.41 -26.73 -0.09 -2.31 16 5 C 0.07 1.27 4.88 -3.82 -0.02 1.25 16 6 N -0.52 -10.34 4.46 -237.51 -1.06 -11.40 16 7 C 0.14 3.19 2.47 -4.97 -0.01 3.18 16 8 C -0.50 -13.64 7.57 -34.43 -0.26 -13.90 16 9 H 0.09 2.71 6.01 -52.49 -0.32 2.40 16 10 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 12 Si 0.87 21.33 27.53 -169.99 -4.68 16.65 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 15 H -0.27 -6.16 6.45 56.52 0.36 -5.80 16 16 C 0.10 1.69 4.92 -4.98 -0.02 1.67 16 17 C -0.18 -3.07 5.07 -104.27 -0.53 -3.60 16 18 C -0.02 -0.28 9.84 -39.32 -0.39 -0.67 16 19 C -0.24 -3.35 10.10 -39.42 -0.40 -3.75 16 20 C 0.14 2.10 11.17 -17.57 -0.20 1.91 16 21 N -0.55 -9.83 10.39 -12.44 -0.13 -9.96 16 22 C 0.42 7.53 6.62 -155.01 -1.03 6.50 16 23 N -0.85 -14.30 7.38 31.12 0.23 -14.07 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.65 6.43 -51.93 -0.33 0.32 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.11 2.51 5.36 -51.93 -0.28 2.23 16 32 H 0.06 1.25 8.00 -51.93 -0.42 0.83 16 33 H 0.05 0.83 5.91 -51.92 -0.31 0.52 16 34 H 0.02 0.36 7.80 -51.93 -0.40 -0.04 16 35 H -0.02 -0.36 6.43 -51.93 -0.33 -0.70 16 36 H 0.05 1.11 3.57 -51.93 -0.19 0.93 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.07 1.06 7.76 -51.93 -0.40 0.66 16 39 H 0.02 0.37 6.69 -51.93 -0.35 0.03 16 40 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.41 6.78 5.28 -40.82 -0.22 6.56 16 44 H 0.40 6.19 8.95 -40.82 -0.37 5.82 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -30.74 336.52 -9.31 -40.05 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.88 Total: 13.12 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -2.63 Total: -13.10 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.19 Total: -61.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.68 Total: 16.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.74 -9.31 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308589876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.913 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds