Wall clock time and date at job start Mon Mar 30 2020 01:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47272 * 2 1 4 4 C 1.52998 * 109.47006 * 120.00144 * 2 1 3 5 5 C 1.53001 * 109.47220 * 174.99896 * 4 2 1 6 6 N 1.46898 * 109.47671 * 173.43351 * 5 4 2 7 7 C 1.46903 * 110.99913 * 73.53822 * 6 5 4 8 8 C 1.50708 * 109.46985 * 285.46643 * 7 6 5 9 9 H 1.07993 * 119.99987 * 356.84484 * 8 7 6 10 10 C 1.37881 * 119.99808 * 176.84630 * 8 7 6 11 11 N 1.31509 * 119.99816 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99987 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46873 * 90.00283 * 12 10 8 14 14 H 1.48502 * 109.47044 * 210.00097 * 12 10 8 15 15 H 1.48501 * 109.47336 * 330.00226 * 12 10 8 16 16 C 1.46895 * 111.00474 * 197.49379 * 6 5 4 17 17 C 1.50702 * 109.47316 * 169.13675 * 16 6 5 18 18 C 1.38337 * 120.44823 * 267.20731 * 17 16 6 19 19 C 1.38843 * 118.50426 * 180.23088 * 18 17 16 20 20 C 1.38069 * 119.32579 * 359.51801 * 19 18 17 21 21 N 1.31940 * 120.85415 * 0.48929 * 20 19 18 22 22 C 1.32424 * 121.62578 * 359.74380 * 21 20 19 23 23 N 1.39003 * 119.70772 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47139 * 299.99705 * 1 2 3 25 25 H 1.09003 * 109.47242 * 60.00212 * 1 2 3 26 26 H 1.08999 * 109.47257 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46951 * 239.99885 * 2 1 3 28 28 H 1.09005 * 109.47596 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47306 * 300.00197 * 3 2 1 30 30 H 1.08999 * 109.47419 * 59.99652 * 3 2 1 31 31 H 1.08998 * 109.47793 * 55.00098 * 4 2 1 32 32 H 1.09000 * 109.47180 * 294.99648 * 4 2 1 33 33 H 1.09008 * 109.47261 * 53.43594 * 5 4 2 34 34 H 1.09002 * 109.47447 * 293.44209 * 5 4 2 35 35 H 1.08999 * 109.46929 * 45.45720 * 7 6 5 36 36 H 1.08991 * 109.47533 * 165.46427 * 7 6 5 37 37 H 0.96997 * 119.99957 * 179.97438 * 11 10 8 38 38 H 1.09002 * 109.47012 * 49.13460 * 16 6 5 39 39 H 1.09006 * 109.46892 * 289.13342 * 16 6 5 40 40 H 1.07998 * 120.75174 * 359.95112 * 18 17 16 41 41 H 1.08000 * 120.33544 * 179.74587 * 19 18 17 42 42 H 1.08003 * 119.57129 * 180.25661 * 20 19 18 43 43 H 0.96999 * 120.00034 * 180.02562 * 23 22 21 44 44 H 0.97003 * 119.99997 * 0.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1880 6 7 4.0675 -1.3804 2.4542 7 6 3.7767 -2.8166 2.5574 8 6 2.3118 -3.0126 2.8525 9 1 1.6721 -2.1557 3.0037 10 6 1.7884 -4.2859 2.9293 11 7 0.5102 -4.4569 3.1873 12 14 2.8948 -5.7679 2.6670 13 1 3.4690 -6.1935 3.9687 14 1 2.1013 -6.8817 2.0882 15 1 3.9936 -5.4068 1.7356 16 6 5.5056 -1.1223 2.6061 17 6 5.9299 -1.4551 4.0133 18 6 5.9458 -0.4763 4.9908 19 6 6.3483 -0.8264 6.2726 20 6 6.7086 -2.1332 6.5349 21 7 6.6838 -3.0462 5.5827 22 6 6.3105 -2.7507 4.3470 23 7 6.2997 -3.7439 3.3746 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.9940 0.1575 1.0250 34 1 3.8490 -1.4903 0.3677 35 1 4.0263 -3.3064 1.6162 36 1 4.3705 -3.2508 3.3617 37 1 0.1419 -5.3526 3.2410 38 1 5.7093 -0.0706 2.4042 39 1 6.0621 -1.7417 1.9027 40 1 5.6559 0.5384 4.7609 41 1 6.3757 -0.0850 7.0573 42 1 7.0184 -2.4108 7.5316 43 1 6.0274 -3.5321 2.4680 44 1 6.5646 -4.6488 3.6026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308589876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:05 Heat of formation + Delta-G solvation = 21.377665 kcal Electronic energy + Delta-G solvation = -22514.316131 eV Core-core repulsion = 19465.750640 eV Total energy + Delta-G solvation = -3048.565491 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33748 -39.02199 -36.84905 -35.47630 -34.70485 -33.45008 -30.85831 -30.19601 -29.17357 -27.90645 -26.20974 -24.37912 -23.70633 -22.87784 -21.40151 -20.80650 -18.97171 -18.36943 -18.23538 -16.83078 -16.63669 -16.22236 -15.98650 -15.75429 -15.30541 -15.06297 -14.97325 -14.66924 -14.41890 -14.24298 -13.89548 -13.71352 -13.35995 -13.16859 -13.01547 -12.82914 -12.45138 -12.33563 -12.19038 -12.11298 -11.88625 -11.66638 -11.40797 -11.40011 -11.16244 -10.94347 -10.55407 -10.43066 -10.29193 -8.97522 -8.63444 -8.20499 -6.16658 0.43343 0.67637 1.29132 1.31877 1.38507 2.35069 2.64704 2.99698 3.12313 3.44755 3.78470 3.98567 4.10247 4.14697 4.19709 4.26093 4.28937 4.42422 4.51254 4.65555 4.73114 4.77701 4.80031 4.88716 4.89155 4.94628 4.96132 5.06803 5.13691 5.18503 5.27287 5.31802 5.35014 5.48230 5.54858 5.65242 5.67991 5.84194 5.86452 6.08856 6.30761 6.51051 6.56459 6.73810 6.88039 7.36658 7.41624 8.94651 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012634 B = 0.007356 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.655129 B = 3805.738498 C = 5333.863085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.107 4.107 5 C 0.073 3.927 6 N -0.538 5.538 7 C 0.152 3.848 8 C -0.492 4.492 9 H 0.057 0.943 10 C 0.005 3.995 11 N -0.949 5.949 12 Si 0.928 3.072 13 H -0.278 1.278 14 H -0.292 1.292 15 H -0.242 1.242 16 C 0.105 3.895 17 C -0.202 4.202 18 C -0.025 4.025 19 C -0.233 4.233 20 C 0.127 3.873 21 N -0.576 5.576 22 C 0.393 3.607 23 N -0.852 5.852 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.019 0.981 35 H -0.017 1.017 36 H 0.051 0.949 37 H 0.260 0.740 38 H 0.102 0.898 39 H 0.033 0.967 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.408 0.592 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 10.136 -2.610 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.195 4.195 4 C -0.145 4.145 5 C -0.055 4.055 6 N -0.262 5.262 7 C 0.025 3.975 8 C -0.531 4.531 9 H 0.075 0.925 10 C -0.191 4.191 11 N -0.592 5.592 12 Si 0.754 3.246 13 H -0.204 1.204 14 H -0.219 1.219 15 H -0.165 1.165 16 C -0.023 4.023 17 C -0.209 4.209 18 C -0.051 4.051 19 C -0.255 4.255 20 C -0.030 4.030 21 N -0.295 5.295 22 C 0.156 3.844 23 N -0.398 5.398 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.001 0.999 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.051 0.949 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.195 0.805 43 H 0.242 0.758 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 12.049 9.425 -2.029 15.431 hybrid contribution -0.169 -1.212 -0.914 1.528 sum 11.880 8.213 -2.943 14.739 Atomic orbital electron populations 1.21767 0.95741 1.00672 1.01679 1.21114 0.95533 0.97135 0.97594 1.21815 1.01257 0.94639 1.01747 1.21804 0.95403 1.00819 0.96448 1.22061 0.95799 0.98826 0.88793 1.61953 1.13134 1.16190 1.34921 1.20478 0.96171 0.85678 0.95160 1.21508 0.94137 0.92816 1.44646 0.92463 1.25694 0.96019 1.01670 0.95726 1.70039 1.14031 1.22539 1.52551 0.85995 0.80014 0.79582 0.79031 1.20392 1.21860 1.16491 1.20869 0.87984 1.01974 0.91438 1.20206 1.08733 0.93253 0.98747 1.21511 0.91954 0.99635 0.91982 1.22107 1.06821 0.98350 0.98214 1.22874 0.93370 0.89177 0.97597 1.67148 1.23019 1.38808 1.00492 1.18364 0.90588 0.87708 0.87782 1.42655 1.75436 1.10815 1.10874 0.93476 0.91061 0.94869 0.91683 0.91914 0.91691 0.93204 0.92394 0.94173 0.89475 0.96266 0.99941 0.93143 0.93118 0.88012 0.94925 0.83109 0.82237 0.80502 0.75845 0.76942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.19 71.98 0.66 -3.61 16 2 C -0.09 -2.85 2.92 -10.80 -0.03 -2.88 16 3 C -0.14 -3.22 8.96 71.98 0.64 -2.58 16 4 C -0.11 -4.12 3.41 30.59 0.10 -4.02 16 5 C 0.07 2.50 4.88 86.30 0.42 2.92 16 6 N -0.54 -20.69 4.46 -905.35 -4.04 -24.73 16 7 C 0.15 6.96 2.47 85.56 0.21 7.17 16 8 C -0.49 -27.68 7.57 25.60 0.19 -27.49 16 9 H 0.06 3.56 6.01 -2.91 -0.02 3.54 16 10 C 0.00 0.29 5.47 84.66 0.46 0.75 16 11 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 12 Si 0.93 44.74 27.53 68.60 1.89 46.63 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 15 H -0.24 -10.39 6.45 99.48 0.64 -9.74 16 16 C 0.11 3.22 4.92 85.56 0.42 3.64 16 17 C -0.20 -6.53 5.07 -19.63 -0.10 -6.63 16 18 C -0.02 -0.68 9.84 22.44 0.22 -0.46 16 19 C -0.23 -5.81 10.10 22.37 0.23 -5.59 16 20 C 0.13 3.53 11.17 84.64 0.95 4.48 16 21 N -0.58 -19.87 10.39 -193.26 -2.01 -21.87 16 22 C 0.39 13.70 6.62 133.05 0.88 14.58 16 23 N -0.85 -27.74 7.38 -55.44 -0.41 -28.15 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.06 1.34 6.43 -2.38 -0.02 1.32 16 29 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 2.82 5.36 -2.39 -0.01 2.81 16 32 H 0.04 1.67 8.00 -2.39 -0.02 1.66 16 33 H 0.09 2.42 5.91 -2.38 -0.01 2.41 16 34 H 0.02 0.67 7.80 -2.39 -0.02 0.65 16 35 H -0.02 -0.77 6.43 -2.39 -0.02 -0.79 16 36 H 0.05 2.33 3.57 -2.39 -0.01 2.32 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.10 2.53 7.76 -2.39 -0.02 2.51 16 39 H 0.03 0.95 6.69 -2.38 -0.02 0.93 16 40 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.18 3.66 8.06 -2.91 -0.02 3.64 16 43 H 0.41 12.99 5.28 -92.71 -0.49 12.50 16 44 H 0.40 12.12 8.95 -92.71 -0.83 11.29 16 Total: -1.00 -69.56 336.52 0.62 -68.94 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.38 Total: 38.47 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.26 Total: -19.71 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -6.16 Total: -134.33 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.89 Total: 46.63 kcal Total: -69.56 0.62 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308589876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.318 kcal (2) G-P(sol) polarization free energy of solvation -69.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds