Wall clock time and date at job start Mon Mar 30 2020 02:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46961 * 2 1 4 4 N 1.46900 * 109.47164 * 119.99709 * 2 1 3 5 5 C 1.46897 * 111.00359 * 298.95321 * 4 2 1 6 6 C 1.46901 * 111.00018 * 175.00005 * 4 2 1 7 7 C 1.52999 * 109.47509 * 190.00468 * 6 4 2 8 8 H 1.09002 * 109.46716 * 295.00061 * 7 6 4 9 9 C 1.52997 * 109.47317 * 175.00152 * 7 6 4 10 10 N 1.46500 * 109.46944 * 54.99712 * 7 6 4 11 11 C 1.38827 * 119.99631 * 205.00214 * 10 7 6 12 12 C 1.39790 * 119.58751 * 359.72893 * 11 10 7 13 13 C 1.38594 * 119.49215 * 179.79057 * 12 11 10 14 14 C 1.38388 * 118.68069 * 0.47548 * 13 12 11 15 15 C 1.40553 * 119.14704 * 359.74713 * 14 13 12 16 16 C 1.41318 * 119.78522 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99887 * 0.02562 * 16 15 14 18 18 C 1.40020 * 120.00291 * 180.02562 * 16 15 14 19 19 N 1.30750 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00385 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46677 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47063 * 119.99803 * 20 18 16 23 23 H 1.48500 * 109.47100 * 240.00087 * 20 18 16 24 24 N 1.31954 * 119.58058 * 180.02562 * 11 10 7 25 25 H 1.09003 * 109.47190 * 300.00018 * 1 2 3 26 26 H 1.08995 * 109.47250 * 59.99903 * 1 2 3 27 27 H 1.08994 * 109.46878 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47190 * 239.99982 * 2 1 3 29 29 H 1.09000 * 109.46955 * 299.99710 * 3 2 1 30 30 H 1.09003 * 109.47183 * 59.99978 * 3 2 1 31 31 H 1.09003 * 109.47196 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47077 * 296.05020 * 5 4 2 33 33 H 1.09008 * 109.46527 * 56.04658 * 5 4 2 34 34 H 1.08992 * 109.47211 * 176.04496 * 5 4 2 35 35 H 1.09001 * 109.47228 * 69.99928 * 6 4 2 36 36 H 1.09006 * 109.46793 * 310.00592 * 6 4 2 37 37 H 1.09002 * 109.47153 * 299.99641 * 9 7 6 38 38 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 39 39 H 1.09004 * 109.47261 * 59.99813 * 9 7 6 40 40 H 0.96994 * 119.99975 * 25.00733 * 10 7 6 41 41 H 1.08000 * 120.25237 * 359.97438 * 12 11 10 42 42 H 1.07997 * 120.66089 * 180.23048 * 13 12 11 43 43 H 1.07994 * 120.42965 * 179.77148 * 14 13 12 44 44 H 0.96994 * 120.00117 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5693 -0.0120 2.4210 6 6 3.4833 -0.8164 1.1751 7 6 3.9348 -1.7505 2.2996 8 1 3.6996 -1.2989 3.2634 9 6 5.4443 -1.9785 2.1980 10 7 3.2378 -3.0333 2.1783 11 6 3.0578 -3.8341 3.2980 12 6 3.5502 -3.4105 4.5358 13 6 3.3656 -4.2094 5.6532 14 6 2.7031 -5.4154 5.5052 15 6 2.2356 -5.7881 4.2332 16 6 1.5578 -7.0169 4.0667 17 1 1.4002 -7.6660 4.9154 18 6 1.0906 -7.3930 2.8014 19 7 1.2810 -6.6070 1.7740 20 14 0.1954 -9.0176 2.5811 21 1 0.1107 -9.7172 3.8883 22 1 -1.1738 -8.7624 2.0661 23 1 0.9382 -9.8649 1.6139 24 7 2.4292 -4.9882 3.1792 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 2.0053 0.9861 2.4627 33 1 0.4821 0.0664 2.4132 34 1 1.8861 -0.5837 3.2932 35 1 3.9335 0.1662 1.3161 36 1 3.7973 -1.2255 0.2148 37 1 5.6794 -2.4301 1.2342 38 1 5.7659 -2.6437 2.9994 39 1 5.9629 -1.0240 2.2883 40 1 2.9021 -3.3232 1.3157 41 1 4.0678 -2.4665 4.6214 42 1 3.7349 -3.8989 6.6194 43 1 2.5470 -6.0617 6.3562 44 1 0.9577 -6.8676 0.8975 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323960086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:18 Heat of formation + Delta-G solvation = 23.921233 kcal Electronic energy + Delta-G solvation = -22163.742618 eV Core-core repulsion = 19115.287424 eV Total energy + Delta-G solvation = -3048.455193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36309 -39.50653 -37.07574 -35.23973 -33.20585 -32.18817 -31.50958 -29.63236 -28.57272 -27.70616 -27.15411 -25.48912 -23.40017 -22.82217 -21.24819 -20.48231 -19.14845 -18.06530 -17.18567 -16.76406 -16.56479 -16.18954 -15.62398 -15.55302 -15.22170 -14.75896 -14.56148 -14.30859 -14.06272 -13.78731 -13.66627 -13.46234 -13.09931 -12.90711 -12.84512 -12.70197 -12.65845 -12.53938 -12.48971 -12.32111 -12.07107 -12.02759 -11.65511 -11.62569 -11.45068 -11.24032 -10.57063 -9.76444 -9.35075 -9.07949 -8.16409 -8.12243 -6.42521 1.11987 1.42307 1.42803 1.57428 1.60331 2.27556 2.74270 2.98270 3.06022 3.85018 4.00860 4.11572 4.17862 4.26833 4.37719 4.41930 4.45607 4.48518 4.51860 4.65512 4.74727 4.75730 4.80918 4.86370 4.92221 4.96686 5.02905 5.05592 5.05947 5.10129 5.13376 5.23530 5.32561 5.39217 5.39699 5.45936 5.79357 6.03077 6.14385 6.22281 6.28235 6.29672 6.68550 6.92752 7.08092 7.35866 8.43967 8.58502 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016914 B = 0.005078 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.021976 B = 5512.236070 C = 6492.488271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 C -0.178 4.178 4 N -0.548 5.548 5 C 0.027 3.973 6 C 0.058 3.942 7 C 0.162 3.838 8 H 0.066 0.934 9 C -0.159 4.159 10 N -0.708 5.708 11 C 0.405 3.595 12 C -0.367 4.367 13 C -0.031 4.031 14 C -0.351 4.351 15 C 0.261 3.739 16 C -0.475 4.475 17 H 0.082 0.918 18 C 0.027 3.973 19 N -0.749 5.749 20 Si 0.983 3.017 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.267 1.267 24 N -0.566 5.566 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.085 0.915 40 H 0.391 0.609 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 14.376 -5.387 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.237 4.237 4 N -0.271 5.271 5 C -0.121 4.121 6 C -0.070 4.070 7 C 0.056 3.944 8 H 0.084 0.916 9 C -0.218 4.218 10 N -0.341 5.341 11 C 0.164 3.836 12 C -0.392 4.392 13 C -0.056 4.056 14 C -0.374 4.374 15 C 0.134 3.866 16 C -0.507 4.507 17 H 0.101 0.899 18 C -0.194 4.194 19 N -0.372 5.372 20 Si 0.804 3.196 21 H -0.180 1.180 22 H -0.192 1.192 23 H -0.191 1.191 24 N -0.289 5.289 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.104 0.896 40 H 0.224 0.776 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.852 13.848 -6.322 15.335 hybrid contribution 0.112 0.042 0.646 0.657 sum 1.964 13.890 -5.675 15.132 Atomic orbital electron populations 1.21834 0.94475 1.01438 1.02179 1.21749 0.95820 0.93119 0.92634 1.22401 1.01481 0.96988 1.02808 1.62056 1.10750 1.51785 1.02556 1.22340 1.00900 0.96620 0.92231 1.22349 0.87660 0.98263 0.98766 1.20910 0.91354 0.83287 0.98874 0.91616 1.22202 0.95451 1.02420 1.01758 1.44151 1.63214 1.19240 1.07496 1.18953 0.88870 0.88889 0.86919 1.20918 1.20311 1.04786 0.93230 1.20970 0.94060 0.92888 0.97647 1.21631 1.16132 1.01589 0.98030 1.18661 0.88773 0.92069 0.87106 1.19925 1.32358 1.02662 0.95767 0.89941 1.26916 0.95778 1.01773 0.94980 1.70276 1.31496 1.35233 1.00149 0.85154 0.78018 0.77043 0.79386 1.17999 1.19219 1.19149 1.68213 1.23591 1.04850 1.32215 0.92642 0.90680 0.93989 0.90330 0.90986 0.92420 0.92223 0.93868 0.91678 0.93461 0.91560 0.90208 0.92594 0.94045 0.89575 0.77563 0.86703 0.85762 0.88474 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.00 71.98 0.65 -2.37 16 2 C 0.07 1.59 2.96 44.92 0.13 1.72 16 3 C -0.18 -2.88 8.50 71.98 0.61 -2.27 16 4 N -0.55 -14.38 4.47 -897.05 -4.01 -18.40 16 5 C 0.03 0.69 8.51 127.69 1.09 1.78 16 6 C 0.06 1.38 3.95 86.30 0.34 1.72 16 7 C 0.16 4.84 2.03 44.99 0.09 4.93 16 8 H 0.07 2.07 5.10 -2.39 -0.01 2.06 16 9 C -0.16 -4.22 9.39 71.98 0.68 -3.54 16 10 N -0.71 -28.77 4.96 -324.46 -1.61 -30.38 16 11 C 0.41 20.29 7.63 133.42 1.02 21.31 16 12 C -0.37 -16.96 8.83 22.73 0.20 -16.76 16 13 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 14 C -0.35 -18.71 9.83 22.87 0.22 -18.48 16 15 C 0.26 15.48 6.55 40.18 0.26 15.75 16 16 C -0.47 -27.43 9.14 23.46 0.21 -27.21 16 17 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 18 C 0.03 1.46 5.50 85.29 0.47 1.93 16 19 N -0.75 -42.02 11.46 21.84 0.25 -41.77 16 20 Si 0.98 40.13 29.56 68.60 2.03 42.15 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 24 N -0.57 -32.93 7.89 -186.59 -1.47 -34.41 16 25 H 0.05 1.16 6.34 -2.39 -0.02 1.15 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.68 8.03 -2.39 -0.02 1.67 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.95 6.47 -2.39 -0.02 0.93 16 31 H 0.06 0.92 6.75 -2.39 -0.02 0.90 16 32 H 0.04 0.90 6.51 -2.39 -0.02 0.89 16 33 H 0.06 1.67 6.13 -2.38 -0.01 1.66 16 34 H 0.05 1.44 6.58 -2.39 -0.02 1.43 16 35 H 0.07 1.27 6.94 -2.39 -0.02 1.25 16 36 H 0.08 1.84 8.00 -2.38 -0.02 1.82 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 1.29 7.62 -2.39 -0.02 1.28 16 39 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.39 16.84 8.72 -92.71 -0.81 16.03 16 41 H 0.12 4.60 6.02 -2.91 -0.02 4.58 16 42 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.27 13.91 8.29 -92.71 -0.77 13.14 16 Total: -1.00 -66.68 343.80 1.57 -65.11 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: 0.18 Total: 40.45 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 6.20 Total: -22.76 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -6.84 Total: -124.95 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.15 kcal Total: -66.68 1.57 -65.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323960086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.030 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds