Wall clock time and date at job start Mon Mar 30 2020 02:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.46991 * 2 1 4 4 N 1.46900 * 109.47372 * 119.99770 * 2 1 3 5 5 C 1.46902 * 110.99808 * 56.04777 * 4 2 1 6 6 C 1.46900 * 110.99923 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47181 * 170.00019 * 6 4 2 8 8 H 1.09003 * 109.46981 * 65.00399 * 7 6 4 9 9 C 1.53002 * 109.47303 * 184.99885 * 7 6 4 10 10 N 1.46501 * 109.47453 * 305.00104 * 7 6 4 11 11 C 1.38822 * 119.99981 * 154.99479 * 10 7 6 12 12 C 1.39794 * 119.58827 * 0.02562 * 11 10 7 13 13 C 1.38595 * 119.49187 * 179.97438 * 12 11 10 14 14 C 1.38382 * 118.67909 * 359.97438 * 13 12 11 15 15 C 1.40555 * 119.15495 * 359.97438 * 14 13 12 16 16 C 1.41312 * 119.78654 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99836 * 359.97438 * 16 15 14 18 18 C 1.40030 * 119.99812 * 180.02562 * 16 15 14 19 19 N 1.30741 * 120.00024 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99798 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47123 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47089 * 119.99544 * 20 18 16 23 23 H 1.48499 * 109.46635 * 239.99541 * 20 18 16 24 24 N 1.31955 * 119.57837 * 180.02562 * 11 10 7 25 25 H 1.08998 * 109.47033 * 299.99887 * 1 2 3 26 26 H 1.08999 * 109.47265 * 60.00155 * 1 2 3 27 27 H 1.09000 * 109.46761 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47033 * 240.00112 * 2 1 3 29 29 H 1.08998 * 109.47140 * 60.00178 * 3 2 1 30 30 H 1.08998 * 109.46984 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46989 * 300.00013 * 3 2 1 32 32 H 1.08998 * 109.47056 * 183.95179 * 5 4 2 33 33 H 1.08990 * 109.46935 * 303.95592 * 5 4 2 34 34 H 1.09000 * 109.46791 * 63.95326 * 5 4 2 35 35 H 1.09005 * 109.47384 * 50.00075 * 6 4 2 36 36 H 1.09007 * 109.47549 * 290.00276 * 6 4 2 37 37 H 1.09001 * 109.47309 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.47129 * 299.99886 * 9 7 6 39 39 H 1.08997 * 109.46995 * 60.00079 * 9 7 6 40 40 H 0.96999 * 119.99173 * 334.99933 * 10 7 6 41 41 H 1.08001 * 120.25405 * 0.24578 * 12 11 10 42 42 H 1.08005 * 120.65686 * 180.02562 * 13 12 11 43 43 H 1.08006 * 120.42240 * 179.97438 * 14 13 12 44 44 H 0.96996 * 120.00058 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.4730 -2.0535 1.2816 6 6 3.4882 -0.7115 1.2336 7 6 3.9601 -1.2113 2.6005 8 1 3.6551 -2.2494 2.7328 9 6 5.4849 -1.1136 2.6807 10 7 3.3619 -0.3885 3.6546 11 6 3.1950 -0.9088 4.9308 12 6 3.6014 -2.2189 5.2005 13 6 3.4343 -2.7362 6.4754 14 6 2.8666 -1.9331 7.4489 15 6 2.4793 -0.6236 7.1161 16 6 1.8988 0.2082 8.0999 17 1 1.7536 -0.1630 9.1036 18 6 1.5108 1.5134 7.7730 19 7 1.6862 1.9625 6.5578 20 14 0.7441 2.6132 9.0737 21 1 0.6564 1.8736 10.3584 22 1 1.5840 3.8243 9.2557 23 1 -0.6182 3.0159 8.6409 24 7 2.6548 -0.1605 5.8738 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.7950 -2.5187 2.2133 33 1 0.3843 -2.0099 1.2544 34 1 1.8343 -2.6416 0.4380 35 1 3.8687 0.2958 1.0639 36 1 3.8612 -1.3767 0.4548 37 1 5.8211 -1.4702 3.6543 38 1 5.9299 -1.7259 1.8964 39 1 5.7898 -0.0756 2.5484 40 1 3.0824 0.5199 3.4608 41 1 4.0461 -2.8218 4.4226 42 1 3.7419 -3.7459 6.7047 43 1 2.7229 -2.3078 8.4517 44 1 1.4178 2.8667 6.3315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323999971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:21 Heat of formation + Delta-G solvation = 25.084494 kcal Electronic energy + Delta-G solvation = -22226.414567 eV Core-core repulsion = 19178.009816 eV Total energy + Delta-G solvation = -3048.404751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33198 -39.39511 -36.99355 -35.23257 -33.27885 -32.30348 -31.71928 -29.68484 -29.19635 -27.28227 -26.64615 -25.32430 -23.39920 -22.81134 -21.30133 -20.75800 -19.15106 -18.08865 -17.18947 -16.70429 -16.51298 -16.21832 -15.86023 -15.46536 -15.30367 -14.78435 -14.49804 -14.37915 -13.86685 -13.71459 -13.48762 -13.36083 -13.13328 -13.02339 -12.86008 -12.79469 -12.68482 -12.56845 -12.52396 -12.41232 -12.09505 -11.92511 -11.65705 -11.54567 -11.42283 -11.21766 -10.56889 -9.76432 -9.35099 -9.12615 -8.16411 -8.12198 -6.42462 1.11936 1.42151 1.42832 1.57242 1.60207 2.27418 2.73309 2.98102 3.02685 3.84767 4.01651 4.07408 4.12803 4.27142 4.40238 4.43408 4.47330 4.49865 4.52365 4.64516 4.74106 4.76768 4.83329 4.90752 4.94289 4.95589 4.98177 5.04093 5.05913 5.12209 5.13574 5.23319 5.32423 5.39288 5.42316 5.46042 5.79353 6.03109 6.14076 6.21770 6.27643 6.29559 6.68508 6.92743 7.08053 7.35964 8.43895 8.58414 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.005419 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.636392 B = 5165.714607 C = 6208.836339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 C -0.144 4.144 4 N -0.550 5.550 5 C 0.028 3.972 6 C 0.053 3.947 7 C 0.162 3.838 8 H 0.066 0.934 9 C -0.159 4.159 10 N -0.707 5.707 11 C 0.406 3.594 12 C -0.367 4.367 13 C -0.031 4.031 14 C -0.351 4.351 15 C 0.261 3.739 16 C -0.475 4.475 17 H 0.082 0.918 18 C 0.027 3.973 19 N -0.748 5.748 20 Si 0.983 3.017 21 H -0.257 1.257 22 H -0.267 1.267 23 H -0.268 1.268 24 N -0.566 5.566 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.391 0.609 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 -2.328 -14.771 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 C -0.201 4.201 4 N -0.275 5.275 5 C -0.120 4.120 6 C -0.075 4.075 7 C 0.056 3.944 8 H 0.084 0.916 9 C -0.218 4.218 10 N -0.340 5.340 11 C 0.164 3.836 12 C -0.393 4.393 13 C -0.055 4.055 14 C -0.374 4.374 15 C 0.134 3.866 16 C -0.507 4.507 17 H 0.101 0.899 18 C -0.195 4.195 19 N -0.370 5.370 20 Si 0.804 3.196 21 H -0.180 1.180 22 H -0.191 1.191 23 H -0.192 1.192 24 N -0.289 5.289 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.224 0.776 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.115 0.885 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.121 -1.227 -14.810 14.903 hybrid contribution 0.078 -0.623 0.333 0.711 sum 1.199 -1.849 -14.476 14.643 Atomic orbital electron populations 1.21889 0.94339 1.01996 1.01959 1.21649 0.95796 0.95190 0.90328 1.21889 1.01181 0.95039 1.02040 1.61878 1.07990 1.17634 1.39993 1.22345 1.00604 0.88777 1.00268 1.22437 0.87606 1.02328 0.95131 1.20894 0.92413 0.94786 0.86285 0.91643 1.22203 0.95311 1.02350 1.01977 1.44136 1.68118 1.16167 1.05605 1.18946 0.88747 0.88874 0.87011 1.20919 1.22416 0.97407 0.98542 1.20968 0.93945 0.97972 0.92660 1.21632 1.18070 0.97828 0.99888 1.18660 0.88321 0.90105 0.89517 1.19919 1.35990 0.97773 0.96990 0.89945 1.26918 0.94959 0.99584 0.98040 1.70273 1.31066 1.15700 1.20003 0.85156 0.78189 0.77699 0.78572 1.18005 1.19136 1.19242 1.68215 1.24213 1.35522 1.00946 0.93828 0.90602 0.92382 0.93349 0.93660 0.92135 0.90672 0.93254 0.91364 0.94372 0.89529 0.91937 0.94023 0.89591 0.92565 0.77565 0.86715 0.85773 0.88481 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.84 71.98 0.64 -2.41 16 2 C 0.08 1.68 2.68 44.92 0.12 1.80 16 3 C -0.14 -2.98 8.99 71.99 0.65 -2.33 16 4 N -0.55 -14.59 4.35 -897.04 -3.91 -18.50 16 5 C 0.03 0.72 8.95 127.69 1.14 1.87 16 6 C 0.05 1.28 4.33 86.30 0.37 1.65 16 7 C 0.16 4.87 2.03 44.99 0.09 4.97 16 8 H 0.07 2.07 5.10 -2.39 -0.01 2.06 16 9 C -0.16 -4.23 9.40 71.98 0.68 -3.55 16 10 N -0.71 -28.74 4.96 -324.45 -1.61 -30.35 16 11 C 0.41 20.31 7.63 133.42 1.02 21.32 16 12 C -0.37 -16.98 8.84 22.73 0.20 -16.78 16 13 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 14 C -0.35 -18.73 9.83 22.87 0.22 -18.50 16 15 C 0.26 15.48 6.55 40.18 0.26 15.74 16 16 C -0.47 -27.39 9.14 23.46 0.21 -27.17 16 17 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 18 C 0.03 1.43 5.50 85.29 0.47 1.90 16 19 N -0.75 -41.88 11.46 21.84 0.25 -41.63 16 20 Si 0.98 40.11 29.56 68.60 2.03 42.14 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 24 N -0.57 -32.94 7.89 -186.59 -1.47 -34.41 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.18 6.26 -2.39 -0.01 1.16 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.17 6.20 -2.39 -0.01 1.16 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.51 6.58 -2.39 -0.02 1.49 16 33 H 0.07 1.74 6.01 -2.39 -0.01 1.73 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 2.00 5.83 -2.38 -0.01 1.99 16 36 H 0.06 1.22 8.12 -2.38 -0.02 1.21 16 37 H 0.04 1.30 7.64 -2.39 -0.02 1.28 16 38 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.39 16.84 8.72 -92.71 -0.81 16.03 16 41 H 0.11 4.60 6.03 -2.91 -0.02 4.58 16 42 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 43 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.27 13.88 8.29 -92.71 -0.77 13.11 16 Total: -1.00 -66.67 346.26 1.77 -64.90 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: 0.18 Total: 40.58 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 6.30 Total: -22.74 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -6.74 Total: -124.88 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -66.67 1.77 -64.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323999971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.980 kcal (2) G-P(sol) polarization free energy of solvation -66.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds