Wall clock time and date at job start Mon Mar 30 2020 01:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46785 * 304.99185 * 3 2 1 5 5 C 1.53002 * 109.47068 * 184.99596 * 3 2 1 6 6 N 1.46900 * 109.47358 * 64.99980 * 3 2 1 7 7 C 1.46891 * 111.00120 * 66.04028 * 6 3 2 8 8 C 1.46898 * 110.99814 * 190.00032 * 6 3 2 9 9 C 1.53006 * 109.47006 * 169.99400 * 8 6 3 10 10 N 1.46496 * 109.46995 * 179.97438 * 9 8 6 11 11 C 1.38823 * 119.99845 * 180.02562 * 10 9 8 12 12 C 1.39798 * 119.58344 * 359.72555 * 11 10 9 13 13 C 1.38599 * 119.48845 * 179.79531 * 12 11 10 14 14 C 1.38392 * 118.68224 * 0.47185 * 13 12 11 15 15 C 1.40551 * 119.14435 * 359.75192 * 14 13 12 16 16 C 1.41326 * 119.77948 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00201 * 0.02562 * 16 15 14 18 18 C 1.40025 * 119.99814 * 180.02562 * 16 15 14 19 19 N 1.30748 * 119.99974 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99720 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47352 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47135 * 120.00033 * 20 18 16 23 23 H 1.48508 * 109.46956 * 239.99669 * 20 18 16 24 24 N 1.31953 * 119.58591 * 180.02562 * 11 10 9 25 25 H 1.08999 * 109.46759 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47795 * 300.00279 * 1 2 3 27 27 H 1.09007 * 109.46980 * 60.00878 * 1 2 3 28 28 H 1.08999 * 109.47795 * 239.99721 * 2 1 3 29 29 H 1.09004 * 109.47268 * 119.99555 * 2 1 3 30 30 H 1.09005 * 109.46995 * 300.00321 * 5 3 2 31 31 H 1.09005 * 109.47325 * 59.99697 * 5 3 2 32 32 H 1.08997 * 109.47238 * 179.97438 * 5 3 2 33 33 H 1.09008 * 109.47294 * 183.95307 * 7 6 3 34 34 H 1.08994 * 109.47718 * 303.95889 * 7 6 3 35 35 H 1.09007 * 109.47181 * 63.96365 * 7 6 3 36 36 H 1.09001 * 109.47062 * 49.99654 * 8 6 3 37 37 H 1.08993 * 109.47084 * 289.99101 * 8 6 3 38 38 H 1.09001 * 109.46801 * 300.00064 * 9 8 6 39 39 H 1.09001 * 109.46998 * 59.99660 * 9 8 6 40 40 H 0.96998 * 120.00192 * 359.97438 * 10 9 8 41 41 H 1.07998 * 120.25563 * 359.97438 * 12 11 10 42 42 H 1.08005 * 120.65897 * 180.22637 * 13 12 11 43 43 H 1.07992 * 120.42505 * 179.77410 * 14 13 12 44 44 H 0.97002 * 119.99879 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1256 6 7 1.6513 2.0994 1.2552 7 6 2.3339 1.4873 2.4029 8 6 1.9123 3.5438 1.1963 9 6 1.2731 4.2273 2.4067 10 7 1.5340 5.6677 2.3483 11 6 1.0496 6.5019 3.3466 12 6 0.3091 5.9589 4.4007 13 6 -0.1700 6.7929 5.3987 14 6 0.0936 8.1489 5.3144 15 6 0.8400 8.6349 4.2271 16 6 1.1166 10.0172 4.1274 17 1 0.7551 10.6962 4.8854 18 6 1.8593 10.5064 3.0459 19 7 2.2973 9.6842 2.1284 20 14 2.2254 12.3334 2.9145 21 1 1.6229 13.0434 4.0712 22 1 3.6953 12.5449 2.9142 23 1 1.6486 12.8644 1.6532 24 7 1.2889 7.7981 3.2856 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9994 0.9054 0.7162 31 1 3.8533 0.9570 -1.0570 32 1 3.9281 2.4721 -0.1261 33 1 1.9758 1.9451 3.3251 34 1 2.1239 0.4180 2.4227 35 1 3.4087 1.6449 2.3127 36 1 1.4856 3.9530 0.2806 37 1 2.9880 3.7192 1.2060 38 1 0.1974 4.0518 2.3970 39 1 1.6998 3.8180 3.3224 40 1 2.0458 6.0385 1.6124 41 1 0.1142 4.8973 4.4386 42 1 -0.7410 6.3931 6.2236 43 1 -0.2692 8.8248 6.0745 44 1 2.8121 10.0230 1.3794 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325951155.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:41 Heat of formation + Delta-G solvation = 36.086708 kcal Electronic energy + Delta-G solvation = -21318.702005 eV Core-core repulsion = 18270.774346 eV Total energy + Delta-G solvation = -3047.927659 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.05231 -38.11960 -35.33036 -33.52228 -32.79343 -30.46807 -29.95448 -29.27880 -27.56707 -25.79126 -25.27689 -23.77512 -21.92200 -21.15963 -20.22224 -19.62495 -17.36878 -16.56411 -16.16935 -15.38583 -14.95330 -14.67502 -14.48464 -14.16201 -14.13626 -13.85696 -13.54523 -13.10671 -12.90370 -12.84286 -12.19599 -12.18772 -12.06633 -11.94121 -11.65358 -11.37031 -11.29004 -11.16050 -11.00834 -10.94007 -10.80253 -10.63323 -10.52554 -10.38884 -9.86299 -9.44516 -8.82883 -8.34780 -7.86418 -7.46997 -6.46317 -6.29178 -4.43389 2.89664 3.13445 3.18060 3.28229 3.33318 3.64234 4.01157 4.48562 4.62283 4.83625 4.87991 4.98635 5.07686 5.17981 5.25460 5.36911 5.39564 5.48371 5.52054 5.64571 5.67396 5.74575 5.87370 5.92473 5.96282 6.05385 6.10477 6.18937 6.22183 6.27749 6.30844 6.63312 6.90625 6.92062 6.95601 7.01917 7.04690 7.28967 7.64656 7.86250 7.96765 8.21239 8.41264 8.72939 8.84614 9.16569 10.28643 10.44396 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.003427 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.843299 B = 8167.963286 C = 8931.755018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.079 3.921 4 H 0.082 0.918 5 C -0.188 4.188 6 N -0.528 5.528 7 C 0.014 3.986 8 C 0.046 3.954 9 C 0.147 3.853 10 N -0.740 5.740 11 C 0.412 3.588 12 C -0.365 4.365 13 C -0.032 4.032 14 C -0.317 4.317 15 C 0.292 3.708 16 C -0.435 4.435 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.717 5.717 20 Si 0.904 3.096 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.274 1.274 24 N -0.532 5.532 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.394 0.606 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -15.287 -5.386 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.030 4.030 4 H 0.100 0.900 5 C -0.247 4.247 6 N -0.252 5.252 7 C -0.134 4.134 8 C -0.083 4.083 9 C 0.021 3.979 10 N -0.377 5.377 11 C 0.173 3.827 12 C -0.391 4.391 13 C -0.057 4.057 14 C -0.340 4.340 15 C 0.165 3.835 16 C -0.467 4.467 17 H 0.101 0.899 18 C -0.154 4.154 19 N -0.339 5.339 20 Si 0.729 3.271 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.200 1.200 24 N -0.254 5.254 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.228 0.772 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.570 -15.194 -6.116 16.454 hybrid contribution 0.815 0.657 0.237 1.074 sum 2.385 -14.537 -5.879 15.861 Atomic orbital electron populations 1.21671 0.95127 1.00704 1.02761 1.21584 0.96907 0.95130 1.01571 1.21785 0.93176 0.95574 0.92435 0.90014 1.22491 0.97750 1.02257 1.02216 1.62073 1.57708 1.02551 1.02824 1.22542 0.96588 1.00095 0.94210 1.22250 0.98908 0.87528 0.99572 1.20942 0.99741 0.80906 0.96311 1.44037 1.62048 1.04252 1.27353 1.18488 0.88813 0.89416 0.86028 1.20620 1.17976 0.98332 1.02175 1.20600 0.95711 0.93633 0.95719 1.21531 1.13666 0.94802 1.04027 1.18205 0.86663 0.92663 0.85945 1.19608 1.28673 0.91712 1.06739 0.89885 1.26050 0.94695 0.99429 0.95187 1.70171 1.21913 1.35102 1.06681 0.86332 0.78700 0.82922 0.79166 1.18459 1.19998 1.19975 1.68204 1.28518 0.99253 1.29407 0.93632 0.91278 0.93179 0.92050 0.91902 0.92182 0.92202 0.92399 0.90900 0.91309 0.95218 0.90405 0.94215 0.92335 0.93252 0.77212 0.89158 0.88963 0.88736 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.80 37.16 0.36 -0.92 16 2 C -0.11 -0.96 5.33 -26.73 -0.14 -1.10 16 3 C 0.08 0.76 2.31 -67.71 -0.16 0.60 16 4 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 5 C -0.19 -1.69 8.44 37.16 0.31 -1.38 16 6 N -0.53 -5.94 4.17 -234.89 -0.98 -6.92 16 7 C 0.01 0.14 8.44 60.06 0.51 0.65 16 8 C 0.05 0.59 4.64 -3.82 -0.02 0.57 16 9 C 0.15 2.38 4.81 -4.04 -0.02 2.36 16 10 N -0.74 -15.15 5.72 -60.39 -0.35 -15.50 16 11 C 0.41 10.33 7.65 -155.33 -1.19 9.14 16 12 C -0.37 -8.67 9.34 -38.87 -0.36 -9.03 16 13 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 14 C -0.32 -8.21 9.83 -38.65 -0.38 -8.59 16 15 C 0.29 8.31 6.55 -85.00 -0.56 7.75 16 16 C -0.44 -11.99 9.14 -37.74 -0.34 -12.34 16 17 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 18 C 0.07 1.85 5.50 -17.34 -0.10 1.75 16 19 N -0.72 -19.30 11.46 55.55 0.64 -18.66 16 20 Si 0.90 18.97 29.56 -169.99 -5.02 13.94 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 N -0.53 -15.01 7.89 -10.33 -0.08 -15.10 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.52 6.26 -51.93 -0.33 0.20 16 30 H 0.06 0.53 6.42 -51.93 -0.33 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.57 6.91 -51.93 -0.36 0.21 16 33 H 0.07 0.82 6.47 -51.92 -0.34 0.48 16 34 H 0.07 0.63 6.21 -51.93 -0.32 0.30 16 35 H 0.03 0.31 6.46 -51.93 -0.34 -0.03 16 36 H 0.08 1.01 7.93 -51.93 -0.41 0.60 16 37 H 0.04 0.52 7.06 -51.93 -0.37 0.16 16 38 H 0.06 1.00 7.91 -51.93 -0.41 0.58 16 39 H 0.05 0.81 6.34 -51.93 -0.33 0.48 16 40 H 0.39 7.99 8.59 -40.82 -0.35 7.64 16 41 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 42 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 44 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -29.65 345.78 -10.19 -39.84 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.13 Total: 8.88 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.48 Total: -11.69 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.77 Total: -56.18 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.65 -10.19 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325951155.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.928 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds