Wall clock time and date at job start Mon Mar 30 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47047 * 240.00052 * 3 2 1 5 5 H 1.48499 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47485 * 119.99640 * 3 2 1 7 7 C 1.37885 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 163.04361 * 7 2 1 9 9 C 1.50697 * 119.99845 * 343.04665 * 7 2 1 10 10 C 1.53001 * 115.55045 * 325.45722 * 9 7 2 11 11 N 1.46900 * 109.47436 * 281.29079 * 10 9 7 12 12 C 1.47997 * 110.99605 * 283.72109 * 11 10 9 13 13 C 1.50448 * 112.82362 * 191.34650 * 12 11 10 14 14 C 1.54303 * 108.50282 * 93.73027 * 13 12 11 15 15 C 1.45888 * 112.18206 * 281.46259 * 14 13 12 16 16 H 1.09002 * 108.93902 * 300.51385 * 15 14 13 17 17 C 1.52998 * 108.93759 * 181.81724 * 15 14 13 18 18 C 1.53784 * 113.61636 * 80.86190 * 17 15 14 19 19 C 1.54044 * 86.98492 * 140.01958 * 18 17 15 20 20 C 1.53778 * 87.07999 * 334.56808 * 19 18 17 21 21 C 1.54311 * 112.18584 * 61.12239 * 15 14 13 22 22 C 1.47997 * 111.00138 * 155.00031 * 11 10 9 23 23 C 1.53000 * 117.51850 * 111.16203 * 9 7 2 24 24 C 1.53000 * 60.00125 * 107.47994 * 23 9 7 25 25 H 0.97006 * 120.00407 * 5.01757 * 1 2 3 26 26 H 1.09003 * 109.47177 * 161.28467 * 10 9 7 27 27 H 1.09004 * 109.47177 * 41.29354 * 10 9 7 28 28 H 1.08998 * 108.82025 * 70.48016 * 12 11 10 29 29 H 1.09006 * 108.81822 * 312.20435 * 12 11 10 30 30 H 1.08996 * 109.63177 * 334.01750 * 13 12 11 31 31 H 1.09003 * 109.63305 * 213.43124 * 13 12 11 32 32 H 1.08995 * 108.94120 * 160.76992 * 14 13 12 33 33 H 1.08999 * 108.94128 * 42.15484 * 14 13 12 34 34 H 1.08996 * 112.85006 * 309.66659 * 17 15 14 35 35 H 1.09001 * 113.61343 * 254.61843 * 18 17 15 36 36 H 1.09008 * 113.61098 * 25.51517 * 18 17 15 37 37 H 1.09005 * 113.62118 * 220.02215 * 19 18 17 38 38 H 1.09002 * 113.61539 * 89.12216 * 19 18 17 39 39 H 1.08998 * 113.61701 * 270.87853 * 20 19 18 40 40 H 1.08998 * 113.61133 * 139.97680 * 20 19 18 41 41 H 1.09002 * 109.63433 * 41.16243 * 21 15 14 42 42 H 1.08995 * 109.63431 * 161.76360 * 21 15 14 43 43 H 1.09000 * 108.81269 * 205.69996 * 22 11 10 44 44 H 1.08999 * 108.81259 * 323.97400 * 22 11 10 45 45 H 1.08999 * 117.49555 * 214.96635 * 23 9 7 46 46 H 1.08992 * 117.50126 * 359.97438 * 23 9 7 47 47 H 1.09000 * 117.50173 * 252.51475 * 24 23 9 48 48 H 1.09007 * 117.50075 * 107.48542 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0493 -1.2146 -0.2722 9 6 1.3001 -2.4706 0.3817 10 6 0.2260 -2.3342 1.4627 11 7 0.8666 -2.2543 2.7822 12 6 1.3332 -3.5866 3.2268 13 6 1.7466 -3.6075 4.6732 14 6 0.5383 -4.0560 5.5215 15 6 -0.4208 -2.9763 5.7282 16 1 0.0789 -2.1519 6.2370 17 6 -1.5605 -3.4869 6.6120 18 6 -1.2228 -3.4901 8.1123 19 6 -2.6622 -2.9974 8.3542 20 6 -2.6194 -2.4182 6.9303 21 6 -1.0106 -2.4585 4.3996 22 6 -0.0018 -1.5497 3.7516 23 6 1.0652 -3.5048 -0.7212 24 6 2.1185 -3.7632 0.3580 25 1 -0.4851 0.8368 -0.0735 26 1 -0.4337 -3.2014 1.4309 27 1 -0.3550 -1.4292 1.2855 28 1 2.1840 -3.8838 2.6137 29 1 0.5287 -4.3076 3.0808 30 1 2.0587 -2.6090 4.9793 31 1 2.5698 -4.3091 4.8087 32 1 0.8957 -4.4021 6.4912 33 1 0.0378 -4.8816 5.0155 34 1 -1.9822 -4.4274 6.2574 35 1 -1.0268 -4.4844 8.5136 36 1 -0.4599 -2.7626 8.3896 37 1 -2.7389 -2.2380 9.1324 38 1 -3.3851 -3.8041 8.4760 39 1 -2.2377 -1.3982 6.8851 40 1 -3.5503 -2.5477 6.3782 41 1 -1.2221 -3.3002 3.7401 42 1 -1.9284 -1.9049 4.5975 43 1 0.6235 -1.1086 4.5278 44 1 -0.5310 -0.7503 3.2331 45 1 0.1454 -4.0879 -0.6765 46 1 1.4197 -3.2618 -1.7228 47 1 3.1662 -3.6903 0.0665 48 1 1.8916 -4.5164 1.1127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460669812.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:07 Heat of formation + Delta-G solvation = 30.717191 kcal Electronic energy + Delta-G solvation = -23098.546603 eV Core-core repulsion = 20153.926448 eV Total energy + Delta-G solvation = -2944.620155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06912 -39.35047 -37.72055 -34.51145 -34.18350 -32.93738 -29.14907 -27.58035 -26.87639 -26.32447 -25.09315 -24.03841 -22.87651 -21.35844 -20.75484 -20.42569 -20.21984 -18.12763 -16.92407 -16.73027 -16.46964 -16.26988 -15.64690 -15.34421 -15.15679 -14.83393 -14.39282 -14.14467 -13.93752 -13.49819 -13.29129 -13.20320 -13.15323 -12.84435 -12.79674 -12.68648 -12.36464 -12.31872 -12.16372 -11.99089 -11.84341 -11.65197 -11.53334 -11.45687 -11.25324 -11.04944 -10.86894 -10.80967 -10.55483 -10.43833 -9.86361 -8.66958 -8.00666 -6.04991 1.43384 1.47568 1.54393 2.47247 3.00614 3.24613 3.61613 3.68936 3.79893 3.82002 3.97577 4.02789 4.14826 4.22587 4.32958 4.38971 4.46903 4.56342 4.59273 4.63707 4.74293 4.79731 4.82440 4.88556 4.91455 4.93728 4.93835 4.96445 5.04830 5.08115 5.13830 5.14586 5.15890 5.18278 5.26591 5.27791 5.39002 5.41638 5.51361 5.52465 5.55493 5.57748 5.66389 5.72674 6.17235 6.46154 6.61660 6.77012 6.91992 7.53257 8.99091 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.021166 B = 0.004896 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.560326 B = 5717.641479 C = 6340.303023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.494 4.494 8 H 0.043 0.957 9 C 0.043 3.957 10 C 0.099 3.901 11 N -0.544 5.544 12 C 0.062 3.938 13 C -0.115 4.115 14 C -0.105 4.105 15 C -0.065 4.065 16 H 0.067 0.933 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.141 4.141 21 C -0.129 4.129 22 C 0.068 3.932 23 C -0.213 4.213 24 C -0.191 4.191 25 H 0.261 0.739 26 H -0.014 1.014 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.015 0.985 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.607 -6.818 16.275 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.160 4.160 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.042 3.958 10 C -0.029 4.029 11 N -0.268 5.268 12 C -0.065 4.065 13 C -0.153 4.153 14 C -0.142 4.142 15 C -0.083 4.083 16 H 0.086 0.914 17 C -0.124 4.124 18 C -0.169 4.169 19 C -0.175 4.175 20 C -0.178 4.178 21 C -0.168 4.168 22 C -0.059 4.059 23 C -0.252 4.252 24 C -0.229 4.229 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.365 -6.406 16.306 17.840 hybrid contribution -0.330 0.347 -0.706 0.853 sum -3.695 -6.059 15.601 17.139 Atomic orbital electron populations 1.69811 1.06998 1.27123 1.49961 1.25412 0.95282 1.01301 0.94029 0.85849 0.78777 0.79859 0.78480 1.20168 1.20818 1.20124 1.20623 0.95550 0.91760 1.45214 0.93855 1.19013 0.95637 0.87844 0.93347 1.21785 0.94036 1.00243 0.86836 1.61529 1.41928 1.21234 1.02145 1.22013 0.98735 0.88814 0.96909 1.21422 0.98339 1.02114 0.93421 1.20543 0.95433 0.97957 1.00287 1.20085 0.95524 0.98199 0.94493 0.91425 1.22642 0.95819 0.98871 0.95110 1.22980 0.97144 1.01746 0.94999 1.22843 0.97248 1.00775 0.96672 1.22939 0.98844 0.98747 0.97283 1.21856 0.98895 0.99145 0.96928 1.21793 0.93387 0.96082 0.94664 1.22997 0.99244 1.07837 0.95113 1.22991 0.95521 1.02669 1.01677 0.92910 0.99644 0.87768 0.91607 0.96735 0.91738 0.90147 0.90511 0.93004 0.89893 0.91024 0.90072 0.91071 0.89828 0.90486 0.92109 0.93852 0.91198 0.91592 0.94113 0.91239 0.91522 0.91062 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.54 10.76 21.45 0.23 -50.30 16 2 C 0.04 2.17 5.15 84.66 0.44 2.61 16 3 Si 0.94 44.00 29.57 68.60 2.03 46.03 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.49 -27.74 9.02 25.60 0.23 -27.51 16 8 H 0.04 2.46 7.87 -2.91 -0.02 2.44 16 9 C 0.04 2.16 1.95 -52.93 -0.10 2.06 16 10 C 0.10 4.76 4.71 86.30 0.41 5.16 16 11 N -0.54 -22.78 4.60 -900.25 -4.14 -26.92 16 12 C 0.06 2.19 3.97 85.27 0.34 2.53 16 13 C -0.12 -3.16 5.63 30.21 0.17 -2.99 16 14 C -0.10 -2.42 4.47 28.86 0.13 -2.29 16 15 C -0.06 -1.51 1.49 -12.53 -0.02 -1.53 16 16 H 0.07 1.60 7.29 -2.39 -0.02 1.59 16 17 C -0.11 -2.07 3.05 -10.27 -0.03 -2.10 16 18 C -0.13 -2.12 7.42 31.21 0.23 -1.89 16 19 C -0.14 -2.14 8.09 31.21 0.25 -1.89 16 20 C -0.14 -2.65 6.33 31.12 0.20 -2.46 16 21 C -0.13 -3.83 4.91 30.21 0.15 -3.68 16 22 C 0.07 2.51 5.15 85.27 0.44 2.95 16 23 C -0.21 -10.09 9.88 30.59 0.30 -9.78 16 24 C -0.19 -8.46 8.52 30.60 0.26 -8.20 16 25 H 0.26 14.01 8.32 -92.70 -0.77 13.24 16 26 H -0.01 -0.69 7.59 -2.39 -0.02 -0.71 16 27 H 0.10 5.65 4.44 -2.38 -0.01 5.64 16 28 H 0.07 2.47 5.16 -2.39 -0.01 2.46 16 29 H 0.01 0.52 6.24 -2.38 -0.01 0.50 16 30 H 0.06 1.90 7.08 -2.39 -0.02 1.88 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.47 7.91 -2.39 -0.02 1.45 16 33 H 0.05 1.25 7.52 -2.39 -0.02 1.23 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.31 7.95 -2.38 -0.02 1.29 16 37 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 1.43 7.00 -2.39 -0.02 1.41 16 42 H 0.07 1.96 6.86 -2.39 -0.02 1.94 16 43 H 0.07 2.28 6.58 -2.39 -0.02 2.26 16 44 H 0.04 1.68 7.43 -2.39 -0.02 1.67 16 45 H 0.07 3.10 8.09 -2.39 -0.02 3.08 16 46 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 47 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 48 H 0.09 3.61 5.82 -2.38 -0.01 3.60 16 Total: -1.00 -58.13 348.40 2.41 -55.72 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.91 Total: 24.50 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 3.39 Total: -49.03 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.91 Total: -77.23 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -58.13 2.41 -55.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460669812.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.441 kcal (2) G-P(sol) polarization free energy of solvation -58.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds