Wall clock time and date at job start Mon Mar 30 2020 01:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46838 * 2 1 4 4 N 1.46504 * 109.46932 * 184.12561 * 3 2 1 5 5 C 1.35041 * 126.40061 * 263.27439 * 4 3 2 6 6 N 1.30497 * 108.70358 * 180.26520 * 5 4 3 7 7 C 1.34129 * 109.25248 * 359.77301 * 6 5 4 8 8 C 1.34670 * 108.02051 * 359.97438 * 7 6 5 9 9 C 1.50707 * 126.58884 * 179.97438 * 8 7 6 10 10 N 1.46492 * 109.47212 * 270.76193 * 9 8 7 11 11 C 1.36935 * 120.00409 * 274.92435 * 10 9 8 12 12 H 1.08005 * 119.99866 * 16.46484 * 11 10 9 13 13 C 1.38810 * 120.00393 * 196.46161 * 11 10 9 14 14 N 1.31619 * 119.99875 * 55.45665 * 13 11 10 15 15 Si 1.86798 * 120.00140 * 235.45077 * 13 11 10 16 16 H 1.48506 * 109.46735 * 90.00198 * 15 13 11 17 17 H 1.48498 * 109.47091 * 210.00163 * 15 13 11 18 18 H 1.48499 * 109.47262 * 330.00436 * 15 13 11 19 19 C 1.46502 * 119.99815 * 94.92693 * 10 9 8 20 20 C 1.55239 * 110.58168 * 62.63347 * 19 10 9 21 21 C 1.54890 * 102.58563 * 203.33751 * 20 19 10 22 22 C 1.54270 * 104.31402 * 37.92777 * 21 20 19 23 23 C 1.53868 * 106.60053 * 336.32667 * 22 21 20 24 24 H 1.08996 * 109.47023 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47016 * 299.99958 * 1 2 3 26 26 H 1.09002 * 109.46983 * 59.99604 * 1 2 3 27 27 H 1.09002 * 109.47255 * 240.00523 * 2 1 3 28 28 H 1.08996 * 109.47368 * 120.00182 * 2 1 3 29 29 H 1.09005 * 109.46980 * 64.13332 * 3 2 1 30 30 H 1.08997 * 109.47326 * 304.12892 * 3 2 1 31 31 H 1.08004 * 125.65045 * 0.02562 * 5 4 3 32 32 H 1.08005 * 125.98835 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46391 * 150.76183 * 9 8 7 34 34 H 1.09006 * 109.46915 * 30.76376 * 9 8 7 35 35 H 0.96994 * 120.00259 * 179.97438 * 14 13 11 36 36 H 1.09004 * 110.43223 * 185.21301 * 19 10 9 37 37 H 1.08998 * 110.89803 * 85.04447 * 20 19 10 38 38 H 1.09003 * 110.76251 * 321.56244 * 20 19 10 39 39 H 1.08998 * 110.48868 * 279.18482 * 21 20 19 40 40 H 1.08996 * 110.48700 * 156.67183 * 21 20 19 41 41 H 1.09002 * 110.02996 * 95.60653 * 22 21 20 42 42 H 1.09004 * 110.03474 * 216.98785 * 22 21 20 43 43 H 1.08995 * 110.03909 * 119.27974 * 23 22 21 44 44 H 1.09003 * 110.03132 * 240.66837 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5016 1.4438 -0.0994 5 6 4.3745 1.5458 0.9260 6 7 5.5880 1.5155 0.4471 7 6 5.5339 1.3893 -0.8872 8 6 4.2376 1.3389 -1.2487 9 6 3.7005 1.2008 -2.6500 10 7 3.5261 2.5306 -3.2393 11 6 2.3748 3.2356 -3.0099 12 1 1.7187 2.9498 -2.2010 13 6 2.0511 4.3178 -3.8167 14 7 1.9719 4.1652 -5.1216 15 14 1.7277 5.9904 -3.0506 16 1 3.0004 6.7510 -2.9670 17 1 0.7574 6.7395 -3.8888 18 1 1.1682 5.8104 -1.6868 19 6 4.5833 3.1061 -4.0744 20 6 4.8118 2.2379 -5.3409 21 6 6.2637 2.6002 -5.7409 22 6 7.0057 2.7424 -4.3959 23 6 5.9374 3.0640 -3.3363 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7383 1.9345 0.9248 30 1 1.6175 1.9773 -0.8506 31 1 4.1117 1.6410 1.9692 32 1 6.3814 1.3372 -1.5546 33 1 2.7396 0.6870 -2.6217 34 1 4.4027 0.6253 -3.2532 35 1 1.7453 4.9212 -5.6854 36 1 4.3328 4.1295 -4.3539 37 1 4.1134 2.5122 -6.1315 38 1 4.7301 1.1775 -5.1023 39 1 6.2846 3.5418 -6.2895 40 1 6.7053 1.8021 -6.3377 41 1 7.5093 1.8083 -4.1467 42 1 7.7314 3.5537 -4.4537 43 1 5.9224 2.2862 -2.5729 44 1 6.1444 4.0316 -2.8791 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461935109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:49 Heat of formation + Delta-G solvation = 69.767624 kcal Electronic energy + Delta-G solvation = -23138.510427 eV Core-core repulsion = 20092.043282 eV Total energy + Delta-G solvation = -3046.467145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.90004 -39.36033 -36.60419 -35.86099 -33.80657 -32.74483 -31.05809 -29.34031 -28.46701 -27.22827 -27.06370 -24.09843 -22.85275 -22.39556 -21.30108 -20.77821 -20.42954 -18.60440 -17.98405 -16.83366 -16.44481 -16.18452 -16.11081 -15.87717 -15.31984 -15.01936 -14.77302 -14.51974 -14.19293 -13.94390 -13.82405 -13.67303 -13.11958 -13.05341 -12.86465 -12.68076 -12.53515 -12.31852 -12.19473 -12.01042 -11.87771 -11.76918 -11.71791 -11.55255 -11.22265 -11.03231 -10.78649 -10.27318 -10.16440 -9.15825 -8.93965 -8.12549 -5.01554 1.28299 1.36232 1.47827 1.50885 2.09492 2.32570 2.51934 2.92268 3.65518 3.82609 3.91000 3.94209 4.01449 4.05246 4.12836 4.27536 4.35085 4.37074 4.51156 4.57410 4.64220 4.76802 4.79247 4.85195 4.88633 4.94280 4.96526 5.00310 5.07870 5.10449 5.21489 5.25050 5.26673 5.34177 5.38348 5.56788 5.66634 5.67412 5.73561 5.86041 5.97870 6.21619 6.52552 7.06499 7.28762 7.87277 8.38415 8.86830 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.008583 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.091587 B = 3261.322652 C = 4460.081540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.093 3.907 4 N -0.445 5.445 5 C 0.163 3.837 6 N -0.528 5.528 7 C -0.059 4.059 8 C -0.014 4.014 9 C 0.218 3.782 10 N -0.579 5.579 11 C -0.296 4.296 12 H 0.072 0.928 13 C 0.016 3.984 14 N -0.845 5.845 15 Si 0.859 3.141 16 H -0.303 1.303 17 H -0.298 1.298 18 H -0.274 1.274 19 C 0.188 3.812 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.166 4.166 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.230 0.770 32 H 0.172 0.828 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.253 0.747 36 H 0.035 0.965 37 H 0.041 0.959 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -8.513 6.798 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.029 4.029 4 N -0.127 5.127 5 C -0.119 4.119 6 N -0.247 5.247 7 C -0.206 4.206 8 C -0.133 4.133 9 C 0.090 3.910 10 N -0.297 5.297 11 C -0.423 4.423 12 H 0.089 0.911 13 C -0.187 4.187 14 N -0.484 5.484 15 Si 0.686 3.314 16 H -0.231 1.231 17 H -0.226 1.226 18 H -0.198 1.198 19 C 0.081 3.919 20 C -0.165 4.165 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.204 4.204 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.189 0.811 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.761 -8.391 7.103 11.335 hybrid contribution -1.062 1.656 -0.351 1.999 sum 1.699 -6.735 6.752 9.687 Atomic orbital electron populations 1.21668 0.93396 1.02881 1.02364 1.21774 0.97508 0.94329 1.02655 1.22251 0.75965 0.99630 1.05026 1.45510 1.08055 1.52543 1.06599 1.25392 0.84142 1.06370 0.95984 1.70156 1.23228 1.21233 1.10104 1.22112 0.95513 1.11017 0.91948 1.22680 0.92370 1.07486 0.90802 1.19128 0.98654 0.87111 0.86079 1.44109 1.14472 1.15005 1.56151 1.18958 1.02467 1.10220 1.10611 0.91087 1.24678 0.98327 1.01740 0.93987 1.70765 1.42240 1.30008 1.05348 0.86839 0.76438 0.87587 0.80486 1.23125 1.22574 1.19838 1.21116 0.86337 0.95143 0.89318 1.22795 0.95909 0.99433 0.98326 1.22258 0.94956 1.01075 0.97181 1.22031 0.96996 1.01765 0.94230 1.23178 0.95851 1.01519 0.99888 0.90997 0.91179 0.93430 0.92767 0.90383 0.87284 0.90143 0.75346 0.81073 0.93369 0.90430 0.93737 0.94634 0.94049 0.92036 0.92903 0.90200 0.90477 0.91887 0.88464 0.95180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.12 -2.77 6.26 30.60 0.19 -2.58 16 3 C 0.09 2.53 5.78 86.38 0.50 3.03 16 4 N -0.45 -14.28 2.75 -514.54 -1.42 -15.70 16 5 C 0.16 4.98 12.55 180.26 2.26 7.25 16 6 N -0.53 -19.06 11.25 -200.31 -2.25 -21.31 16 7 C -0.06 -2.14 10.00 83.52 0.84 -1.31 16 8 C -0.01 -0.52 6.23 40.96 0.26 -0.26 16 9 C 0.22 8.34 5.08 85.64 0.44 8.78 16 10 N -0.58 -26.33 2.53 -675.68 -1.71 -28.04 16 11 C -0.30 -15.13 9.46 84.03 0.79 -14.33 16 12 H 0.07 3.58 5.30 -2.91 -0.02 3.56 16 13 C 0.02 0.84 3.76 84.86 0.32 1.16 16 14 N -0.85 -46.87 13.18 21.65 0.29 -46.58 16 15 Si 0.86 42.47 29.69 68.60 2.04 44.51 16 16 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 17 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 18 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 19 C 0.19 8.30 2.77 46.19 0.13 8.42 16 20 C -0.13 -4.89 6.47 32.01 0.21 -4.69 16 21 C -0.12 -3.66 6.82 31.67 0.22 -3.45 16 22 C -0.11 -3.38 6.80 31.32 0.21 -3.17 16 23 C -0.17 -6.25 6.38 31.32 0.20 -6.05 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.39 7.66 -2.39 -0.02 1.37 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.11 2.38 8.13 -2.38 -0.02 2.36 16 30 H 0.08 2.73 5.30 -2.39 -0.01 2.72 16 31 H 0.23 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.17 5.81 6.24 -2.91 -0.02 5.79 16 33 H 0.05 1.86 7.39 -2.39 -0.02 1.84 16 34 H 0.08 2.75 6.61 -2.38 -0.02 2.73 16 35 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 36 H 0.04 1.86 6.37 -2.38 -0.02 1.84 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.27 6.60 -2.39 -0.02 2.25 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.10 3.54 1.94 -2.39 0.00 3.54 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -62.03 338.31 5.19 -56.84 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.98 Total: 19.52 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 7.27 Total: -9.24 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -5.09 Total: -111.63 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.04 Total: 44.51 kcal Total: -62.03 5.19 -56.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461935109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.606 kcal (2) G-P(sol) polarization free energy of solvation -62.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds