Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00045 * 2 1 4 4 H 1.48501 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46422 * 300.00083 * 3 2 1 6 6 H 1.48498 * 109.46980 * 59.99315 * 3 2 1 7 7 C 1.37877 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.53005 * 115.55109 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47381 * 34.41566 * 10 9 7 12 12 C 1.47439 * 111.00057 * 75.90224 * 11 10 9 13 13 C 1.54316 * 107.23316 * 123.25667 * 12 11 10 14 14 C 1.55149 * 103.01915 * 22.28702 * 13 12 11 15 15 C 1.47847 * 111.00152 * 196.75155 * 11 10 9 16 16 H 1.09001 * 110.36955 * 332.45967 * 15 11 10 17 17 C 1.52996 * 110.37547 * 94.80391 * 15 11 10 18 18 C 1.53000 * 109.47139 * 294.15450 * 17 15 11 19 19 C 1.54268 * 110.03332 * 293.28431 * 18 17 15 20 20 C 1.54881 * 104.19820 * 217.10592 * 19 18 17 21 21 C 1.54899 * 102.74928 * 37.94292 * 20 19 18 22 22 C 1.53878 * 110.03074 * 176.11759 * 18 17 15 23 23 C 1.53003 * 117.49964 * 325.66728 * 9 7 2 24 24 C 1.53000 * 117.50089 * 34.32714 * 9 7 2 25 25 H 0.97002 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46795 * 274.41289 * 10 9 7 27 27 H 1.08996 * 109.47122 * 154.41866 * 10 9 7 28 28 H 1.09001 * 109.89416 * 242.66331 * 12 11 10 29 29 H 1.09003 * 109.88596 * 3.85592 * 12 11 10 30 30 H 1.09005 * 110.70654 * 140.66456 * 13 12 11 31 31 H 1.08997 * 110.71441 * 263.90707 * 13 12 11 32 32 H 1.09001 * 110.98920 * 82.43150 * 14 13 12 33 33 H 1.08994 * 110.99477 * 206.21547 * 14 13 12 34 34 H 1.08998 * 109.47162 * 54.15690 * 17 15 11 35 35 H 1.09001 * 109.47025 * 174.15447 * 17 15 11 36 36 H 1.08994 * 110.01648 * 54.72993 * 18 17 15 37 37 H 1.09004 * 110.48216 * 335.78775 * 19 18 17 38 38 H 1.08999 * 110.48333 * 98.42889 * 19 18 17 39 39 H 1.09004 * 110.75882 * 279.63139 * 20 19 18 40 40 H 1.08997 * 110.76211 * 156.25605 * 20 19 18 41 41 H 1.08993 * 110.48923 * 203.37911 * 21 20 19 42 42 H 1.09003 * 110.48336 * 80.73274 * 21 20 19 43 43 H 1.08996 * 110.03286 * 238.56698 * 22 18 17 44 44 H 1.09001 * 110.03300 * 0.02562 * 22 18 17 45 45 H 1.08998 * 117.49916 * 215.00126 * 23 9 7 46 46 H 1.09000 * 117.49617 * 0.02800 * 23 9 7 47 47 H 1.08998 * 117.49245 * 359.97438 * 24 9 7 48 48 H 1.08999 * 117.49756 * 144.99396 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.1167 -3.7608 0.0018 11 7 3.3352 -3.5179 0.7854 12 6 3.0477 -3.5441 2.2312 13 6 3.9637 -4.6148 2.8602 14 6 5.1184 -4.7353 1.8310 15 6 4.3658 -4.5365 0.4917 16 1 3.8983 -5.4696 0.1772 17 6 5.3241 -4.0291 -0.5876 18 6 4.5670 -3.8692 -1.9075 19 6 4.1246 -5.2502 -2.4337 20 6 4.2892 -5.1420 -3.9699 21 6 5.5836 -4.3041 -4.1168 22 6 5.4947 -3.2676 -2.9777 23 6 -0.0730 -2.5505 0.7655 24 6 -0.0724 -2.5508 -0.7653 25 1 -0.4850 0.8400 -0.0004 26 1 2.3882 -4.0161 -1.0226 27 1 1.5576 -4.5845 0.4454 28 1 3.2614 -2.5693 2.6696 29 1 2.0027 -3.8065 2.3967 30 1 4.3418 -4.2794 3.8260 31 1 3.4360 -5.5633 2.9600 32 1 5.8598 -3.9507 1.9824 33 1 5.5812 -5.7210 1.8769 34 1 5.7346 -3.0657 -0.2852 35 1 6.1356 -4.7448 -0.7186 36 1 3.6977 -3.2276 -1.7636 37 1 4.7685 -6.0343 -2.0352 38 1 3.0834 -5.4417 -2.1741 39 1 3.4401 -4.6222 -4.4137 40 1 4.4151 -6.1288 -4.4154 41 1 5.6072 -3.8052 -5.0856 42 1 6.4631 -4.9355 -3.9903 43 1 5.0750 -2.3346 -3.3539 44 1 6.4843 -3.0900 -2.5569 45 1 -0.3274 -3.4830 1.2691 46 1 -0.3993 -1.6401 1.2683 47 1 -0.3984 -1.6406 -1.2687 48 1 -0.3265 -3.4836 -1.2687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473595788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = 5.583721 kcal Electronic energy + Delta-G solvation = -23507.695318 eV Core-core repulsion = 20561.985294 eV Total energy + Delta-G solvation = -2945.710024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.63246 -38.73081 -37.89353 -33.70765 -32.95586 -32.28391 -29.55897 -28.79620 -27.73838 -26.49977 -24.77672 -22.69496 -22.03233 -21.69943 -20.73480 -20.61719 -20.01884 -17.90169 -17.42606 -16.85003 -16.33748 -15.89254 -15.83022 -15.30223 -14.87599 -14.70739 -14.18614 -13.93734 -13.83298 -13.42551 -13.33488 -13.06353 -12.96026 -12.73132 -12.59600 -12.33246 -12.18873 -12.04450 -11.93848 -11.88154 -11.84611 -11.73817 -11.56457 -11.42091 -11.34626 -11.15771 -11.01255 -10.91528 -10.64197 -10.18247 -9.92706 -8.83183 -7.90073 -5.95696 1.40280 1.43950 1.55289 2.49524 3.08856 3.30252 3.73205 3.83091 3.89667 3.91597 4.03165 4.06695 4.19014 4.41026 4.48187 4.54500 4.61625 4.63708 4.65603 4.76020 4.76719 4.81088 4.86003 4.89147 4.91911 4.97536 5.00324 5.04825 5.08197 5.15291 5.16387 5.20539 5.21527 5.28387 5.32954 5.38761 5.42957 5.47960 5.53058 5.57337 5.63974 5.73331 5.80914 6.04334 6.22386 6.41288 6.56036 6.72650 7.10152 7.60234 9.04948 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.007144 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.986438 B = 3918.260029 C = 4664.162959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.001 3.999 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.443 4.443 8 H 0.068 0.932 9 C 0.025 3.975 10 C 0.104 3.896 11 N -0.514 5.514 12 C 0.052 3.948 13 C -0.134 4.134 14 C -0.115 4.115 15 C 0.066 3.934 16 H 0.049 0.951 17 C -0.082 4.082 18 C -0.101 4.101 19 C -0.115 4.115 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.194 4.194 24 C -0.194 4.194 25 H 0.250 0.750 26 H 0.076 0.924 27 H 0.009 0.991 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.156 -12.457 -1.737 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.481 4.481 8 H 0.086 0.914 9 C 0.024 3.976 10 C -0.024 4.024 11 N -0.237 5.237 12 C -0.076 4.076 13 C -0.173 4.173 14 C -0.153 4.153 15 C -0.042 4.042 16 H 0.068 0.932 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.153 4.153 20 C -0.163 4.163 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.232 4.232 24 C -0.232 4.232 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.215 -11.820 -1.876 17.101 hybrid contribution -0.957 0.750 0.311 1.255 sum 11.258 -11.071 -1.564 15.867 Atomic orbital electron populations 1.70194 1.06748 1.25614 1.52621 1.25719 0.95599 1.01933 0.96322 0.85653 0.79336 0.80664 0.76833 1.19243 1.21485 1.21522 1.20871 0.93211 0.88904 1.45130 0.91400 1.19154 0.85337 0.94141 0.98924 1.21780 0.89704 0.93430 0.97511 1.63231 1.08844 1.47276 1.04387 1.22628 0.97719 0.98644 0.88590 1.22771 0.96627 0.98391 0.99468 1.22705 0.97097 1.02690 0.92826 1.22704 0.92679 0.92674 0.96111 0.93250 1.21526 0.96745 1.00739 0.92973 1.21862 0.98510 0.96766 0.94796 1.22438 1.00258 0.96779 0.95788 1.22496 0.97684 1.00274 0.95799 1.22324 0.98043 0.97160 0.97862 1.22192 0.99435 0.98186 0.96046 1.22706 1.07726 0.98597 0.94128 1.22685 1.07252 0.99082 0.94231 0.94010 0.90548 0.97274 0.92986 0.94861 0.89909 0.91207 0.90911 0.88944 0.93073 0.90134 0.92406 0.90434 0.93431 0.92916 0.90302 0.91706 0.90413 0.93876 0.91334 0.92969 0.90425 0.90146 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 8.59 21.45 0.18 -52.84 16 2 C 0.00 0.05 5.27 84.66 0.45 0.50 16 3 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 7 C -0.44 -24.27 8.70 25.60 0.22 -24.05 16 8 H 0.07 3.76 7.22 -2.91 -0.02 3.74 16 9 C 0.03 1.26 2.14 -52.93 -0.11 1.15 16 10 C 0.10 4.26 4.08 86.31 0.35 4.61 16 11 N -0.51 -19.03 3.44 -860.65 -2.96 -21.99 16 12 C 0.05 1.86 6.54 86.65 0.57 2.43 16 13 C -0.13 -3.43 6.94 31.78 0.22 -3.21 16 14 C -0.12 -2.69 6.50 31.98 0.21 -2.49 16 15 C 0.07 1.88 2.42 45.38 0.11 1.99 16 16 H 0.05 1.38 7.10 -2.39 -0.02 1.36 16 17 C -0.08 -2.20 4.06 30.59 0.12 -2.08 16 18 C -0.10 -2.94 2.33 -10.07 -0.02 -2.96 16 19 C -0.12 -2.86 5.24 31.67 0.17 -2.69 16 20 C -0.13 -2.79 6.91 31.89 0.22 -2.57 16 21 C -0.12 -2.46 6.83 31.67 0.22 -2.24 16 22 C -0.12 -3.17 6.46 31.32 0.20 -2.97 16 23 C -0.19 -9.97 9.31 30.62 0.29 -9.69 16 24 C -0.19 -9.97 9.39 30.62 0.29 -9.68 16 25 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.08 3.04 3.90 -2.38 -0.01 3.03 16 27 H 0.01 0.37 7.52 -2.39 -0.02 0.35 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.03 1.28 7.37 -2.39 -0.02 1.26 16 30 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.72 8.06 -2.39 -0.02 1.71 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.73 8.03 -2.39 -0.02 1.71 16 36 H 0.06 2.21 5.68 -2.39 -0.01 2.20 16 37 H 0.08 1.64 7.78 -2.38 -0.02 1.62 16 38 H 0.05 1.31 6.90 -2.39 -0.02 1.29 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.64 7.67 -2.39 -0.02 1.62 16 45 H 0.05 2.45 8.05 -2.39 -0.02 2.43 16 46 H 0.08 4.50 6.28 -2.39 -0.01 4.48 16 47 H 0.08 4.63 6.28 -2.39 -0.02 4.62 16 48 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -60.21 351.70 3.64 -56.56 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.90 Total: 24.90 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.49 Total: -53.96 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -2.77 Total: -74.83 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -60.21 3.64 -56.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473595788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.147 kcal (2) G-P(sol) polarization free energy of solvation -60.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds