Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 C 1.52998 * 109.47057 * 239.99430 * 2 1 3 5 5 N 1.46499 * 109.46812 * 119.99555 * 2 1 3 6 6 C 1.35043 * 126.39939 * 5.31651 * 5 2 1 7 7 N 1.30502 * 108.70017 * 179.97438 * 6 5 2 8 8 C 1.34125 * 109.25560 * 359.75852 * 7 6 5 9 9 C 1.34668 * 108.02082 * 0.39682 * 8 7 6 10 10 C 1.50699 * 126.59094 * 179.87802 * 9 8 7 11 11 H 1.09002 * 109.49934 * 156.96308 * 10 9 8 12 12 C 1.53042 * 109.52810 * 36.87989 * 10 9 8 13 13 C 1.53038 * 109.53806 * 178.67158 * 12 10 9 14 14 C 1.52762 * 109.38841 * 61.23889 * 13 12 10 15 15 N 1.46932 * 109.00490 * 305.58807 * 14 13 12 16 16 C 1.36931 * 120.62574 * 233.58484 * 15 14 13 17 17 H 1.08002 * 119.99651 * 153.40302 * 16 15 14 18 18 C 1.38809 * 120.00551 * 333.39959 * 16 15 14 19 19 N 1.31626 * 119.99640 * 334.37337 * 18 16 15 20 20 Si 1.86797 * 120.00336 * 154.36333 * 18 16 15 21 21 H 1.48497 * 109.47207 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47520 * 300.00797 * 20 18 16 23 23 H 1.48499 * 109.46772 * 60.00466 * 20 18 16 24 24 C 1.46921 * 118.73872 * 53.30660 * 15 14 13 25 25 H 1.09001 * 109.46765 * 300.00468 * 1 2 3 26 26 H 1.09002 * 109.46905 * 59.99799 * 1 2 3 27 27 H 1.08993 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47241 * 187.07683 * 3 2 1 29 29 H 1.09005 * 109.46978 * 307.06652 * 3 2 1 30 30 H 1.08991 * 109.47576 * 67.07003 * 3 2 1 31 31 H 1.08998 * 109.47308 * 305.70828 * 4 2 1 32 32 H 1.09004 * 109.47224 * 65.70272 * 4 2 1 33 33 H 1.08997 * 109.47352 * 185.70206 * 4 2 1 34 34 H 1.08003 * 125.65014 * 359.97438 * 6 5 2 35 35 H 1.08004 * 125.99163 * 180.24457 * 8 7 6 36 36 H 1.08998 * 109.45725 * 298.68735 * 12 10 9 37 37 H 1.08999 * 109.46001 * 58.64400 * 12 10 9 38 38 H 1.09001 * 109.49354 * 181.31771 * 13 12 10 39 39 H 1.09001 * 109.49361 * 301.37200 * 13 12 10 40 40 H 1.08995 * 109.50923 * 185.70556 * 14 13 12 41 41 H 1.08995 * 109.42956 * 65.41979 * 14 13 12 42 42 H 0.96995 * 119.99994 * 354.66221 * 19 18 16 43 43 H 1.09005 * 109.58784 * 66.43075 * 24 15 14 44 44 H 1.09000 * 109.58981 * 186.71461 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.2650 -1.3358 2.1126 7 7 2.0518 -1.8246 3.0319 8 6 3.3231 -1.5166 2.7354 9 6 3.3234 -0.8026 1.5936 10 6 4.5293 -0.2406 0.8858 11 1 4.2926 -0.0820 -0.1663 12 6 5.6962 -1.2237 1.0042 13 6 6.9111 -0.6684 0.2574 14 6 7.3305 0.6586 0.8873 15 7 6.1728 1.5629 0.9136 16 6 6.2550 2.8174 0.3709 17 1 5.3651 3.3052 0.0012 18 6 7.4819 3.4622 0.2958 19 7 8.4403 3.1539 1.1437 20 14 7.7731 4.7673 -1.0086 21 1 9.1534 5.2989 -0.8775 22 1 7.5998 4.1678 -2.3560 23 1 6.7975 5.8724 -0.8294 24 6 4.9234 1.0933 1.5277 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1227 1.4451 -0.1266 29 1 1.5772 1.9915 -0.8201 30 1 1.7838 1.9185 0.9464 31 1 1.5956 -1.7153 -1.3017 32 1 1.7625 -0.1521 -2.1363 33 1 3.1252 -0.8107 -1.1996 34 1 0.1894 -1.4315 2.0887 35 1 4.1938 -1.7908 3.3126 36 1 5.9486 -1.3627 2.0554 37 1 5.4096 -2.1815 0.5701 38 1 7.7344 -1.3797 0.3224 39 1 6.6521 -0.5065 -0.7889 40 1 8.1299 1.1055 0.2963 41 1 7.6799 0.4827 1.9046 42 1 8.2656 2.5335 1.8686 43 1 5.0725 0.9536 2.5985 44 1 4.1357 1.8281 1.3614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473898312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = 69.083067 kcal Electronic energy + Delta-G solvation = -23203.945184 eV Core-core repulsion = 20157.448354 eV Total energy + Delta-G solvation = -3046.496829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13491 -37.77782 -37.00907 -33.76228 -31.38674 -30.77105 -30.34210 -27.98499 -27.50515 -27.17490 -25.09610 -22.92153 -22.19254 -21.86465 -20.70444 -19.11144 -18.61033 -17.41608 -16.73267 -15.44786 -14.79240 -14.48946 -14.22095 -14.01948 -13.92778 -13.64609 -13.56767 -13.41848 -13.17177 -12.89734 -12.52898 -12.39668 -12.21350 -12.08778 -11.88755 -11.85529 -11.38579 -11.20598 -10.85329 -10.74507 -10.51484 -10.24388 -10.06982 -9.98288 -9.87741 -9.60150 -9.34132 -9.26721 -8.43916 -7.99242 -6.89501 -6.09060 -3.23153 2.31414 2.86674 3.43453 3.47218 3.50167 3.68428 4.35623 4.55322 4.58424 4.68570 4.81204 4.86288 5.22095 5.24670 5.29283 5.34109 5.41975 5.44886 5.52203 5.56605 5.63444 5.64156 5.70531 5.76041 5.83359 5.88036 6.01034 6.05802 6.18198 6.22273 6.27098 6.42361 6.49520 6.54075 6.71264 6.79200 6.87538 7.03734 7.11189 7.21223 7.45695 7.95587 8.33456 8.55766 9.09887 9.83173 10.27756 11.20261 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.005836 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.214231 B = 4796.637429 C = 5504.183669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.170 4.170 4 C -0.162 4.162 5 N -0.445 5.445 6 C 0.163 3.837 7 N -0.496 5.496 8 C -0.037 4.037 9 C 0.009 3.991 10 C -0.035 4.035 11 H 0.077 0.923 12 C -0.096 4.096 13 C -0.137 4.137 14 C 0.147 3.853 15 N -0.597 5.597 16 C -0.351 4.351 17 H 0.055 0.945 18 C -0.023 4.023 19 N -0.914 5.914 20 Si 1.062 2.938 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.293 1.293 24 C 0.158 3.842 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.196 0.804 35 H 0.163 0.837 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.017 0.983 42 H 0.270 0.730 43 H 0.019 0.981 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 -7.891 -4.263 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 C -0.227 4.227 4 C -0.219 4.219 5 N -0.129 5.129 6 C -0.119 4.119 7 N -0.214 5.214 8 C -0.184 4.184 9 C -0.106 4.106 10 C -0.056 4.056 11 H 0.095 0.905 12 C -0.135 4.135 13 C -0.176 4.176 14 C 0.021 3.979 15 N -0.320 5.320 16 C -0.480 4.480 17 H 0.073 0.927 18 C -0.225 4.225 19 N -0.554 5.554 20 Si 0.892 3.108 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.220 1.220 24 C 0.032 3.968 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.213 0.787 35 H 0.180 0.820 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.037 0.963 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.719 -7.192 -4.349 15.245 hybrid contribution -1.118 -0.597 0.018 1.268 sum -13.838 -7.789 -4.331 16.459 Atomic orbital electron populations 1.22136 0.92511 1.02996 1.03667 1.20823 0.94982 0.93267 0.83780 1.22466 1.04312 0.93029 1.02936 1.22286 1.03011 1.00498 0.96128 1.45645 1.06580 1.40757 1.19927 1.24654 0.98684 0.99991 0.88543 1.70225 1.01983 1.23430 1.25776 1.21943 0.94878 1.04388 0.97205 1.21405 0.85157 1.04954 0.99105 1.20381 0.88991 0.97346 0.98932 0.90454 1.21394 0.94659 0.96695 1.00703 1.22007 0.96638 0.99000 0.99936 1.20907 0.91283 0.88238 0.97430 1.44106 1.07925 1.12546 1.67449 1.19926 0.96958 0.93364 1.37705 0.92707 1.25784 0.93989 1.01143 1.01598 1.70774 1.36390 1.34689 1.13554 0.83565 0.75997 0.75532 0.75722 1.21051 1.22108 1.22049 1.20965 0.89888 0.91662 0.94327 0.91386 0.90249 0.91577 0.89421 0.90841 0.91782 0.92056 0.90622 0.90873 0.78725 0.81962 0.92158 0.93219 0.92732 0.92513 0.90150 0.96505 0.91910 0.96291 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 7.38 37.16 0.27 -1.00 16 2 C 0.16 1.76 1.05 -131.82 -0.14 1.63 16 3 C -0.17 -2.17 7.58 37.16 0.28 -1.89 16 4 C -0.16 -1.74 8.56 37.16 0.32 -1.42 16 5 N -0.45 -6.21 2.61 -100.14 -0.26 -6.47 16 6 C 0.16 2.27 11.52 -90.37 -1.04 1.23 16 7 N -0.50 -8.33 11.25 -14.66 -0.16 -8.50 16 8 C -0.04 -0.62 11.09 -17.81 -0.20 -0.82 16 9 C 0.01 0.15 5.35 -81.60 -0.44 -0.28 16 10 C -0.04 -0.61 1.64 -91.65 -0.15 -0.76 16 11 H 0.08 1.36 4.43 -51.93 -0.23 1.13 16 12 C -0.10 -1.62 4.76 -26.69 -0.13 -1.75 16 13 C -0.14 -2.52 6.06 -26.83 -0.16 -2.68 16 14 C 0.15 3.38 4.66 -3.93 -0.02 3.36 16 15 N -0.60 -14.53 2.87 -172.58 -0.50 -15.03 16 16 C -0.35 -9.51 9.50 -15.06 -0.14 -9.65 16 17 H 0.06 1.48 7.94 -52.49 -0.42 1.07 16 18 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16 19 N -0.91 -27.02 12.38 55.49 0.69 -26.33 16 20 Si 1.06 24.76 29.99 -169.99 -5.10 19.66 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.16 3.31 5.40 -3.71 -0.02 3.29 16 25 H 0.07 0.55 8.05 -51.93 -0.42 0.14 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.48 7.67 -51.93 -0.40 0.09 16 28 H 0.09 1.38 4.21 -51.93 -0.22 1.16 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.94 5.56 -51.93 -0.29 0.65 16 34 H 0.20 1.99 7.15 -52.48 -0.38 1.62 16 35 H 0.16 2.60 7.48 -52.48 -0.39 2.21 16 36 H 0.06 1.01 7.42 -51.93 -0.39 0.63 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 2.07 6.23 -51.93 -0.32 1.75 16 41 H 0.02 0.40 7.88 -51.93 -0.41 -0.01 16 42 H 0.27 8.07 6.70 -40.82 -0.27 7.79 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.20 5.88 -51.93 -0.31 0.89 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -30.95 329.51 -9.04 -39.99 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.04 Total: 3.18 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -1.64 Total: -11.47 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.23 Total: -56.33 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.10 Total: 19.66 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.95 -9.04 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473898312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.074 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds