Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 C 1.52998 * 109.47057 * 239.99430 * 2 1 3 5 5 N 1.46499 * 109.46812 * 119.99555 * 2 1 3 6 6 C 1.35043 * 126.39939 * 5.31651 * 5 2 1 7 7 N 1.30502 * 108.70017 * 179.97438 * 6 5 2 8 8 C 1.34125 * 109.25560 * 359.75852 * 7 6 5 9 9 C 1.34668 * 108.02082 * 0.39682 * 8 7 6 10 10 C 1.50699 * 126.59094 * 179.87802 * 9 8 7 11 11 H 1.09002 * 109.49934 * 156.96308 * 10 9 8 12 12 C 1.53042 * 109.52810 * 36.87989 * 10 9 8 13 13 C 1.53038 * 109.53806 * 178.67158 * 12 10 9 14 14 C 1.52762 * 109.38841 * 61.23889 * 13 12 10 15 15 N 1.46932 * 109.00490 * 305.58807 * 14 13 12 16 16 C 1.36931 * 120.62574 * 233.58484 * 15 14 13 17 17 H 1.08002 * 119.99651 * 153.40302 * 16 15 14 18 18 C 1.38809 * 120.00551 * 333.39959 * 16 15 14 19 19 N 1.31626 * 119.99640 * 334.37337 * 18 16 15 20 20 Si 1.86797 * 120.00336 * 154.36333 * 18 16 15 21 21 H 1.48497 * 109.47207 * 180.02562 * 20 18 16 22 22 H 1.48497 * 109.47520 * 300.00797 * 20 18 16 23 23 H 1.48499 * 109.46772 * 60.00466 * 20 18 16 24 24 C 1.46921 * 118.73872 * 53.30660 * 15 14 13 25 25 H 1.09001 * 109.46765 * 300.00468 * 1 2 3 26 26 H 1.09002 * 109.46905 * 59.99799 * 1 2 3 27 27 H 1.08993 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47241 * 187.07683 * 3 2 1 29 29 H 1.09005 * 109.46978 * 307.06652 * 3 2 1 30 30 H 1.08991 * 109.47576 * 67.07003 * 3 2 1 31 31 H 1.08998 * 109.47308 * 305.70828 * 4 2 1 32 32 H 1.09004 * 109.47224 * 65.70272 * 4 2 1 33 33 H 1.08997 * 109.47352 * 185.70206 * 4 2 1 34 34 H 1.08003 * 125.65014 * 359.97438 * 6 5 2 35 35 H 1.08004 * 125.99163 * 180.24457 * 8 7 6 36 36 H 1.08998 * 109.45725 * 298.68735 * 12 10 9 37 37 H 1.08999 * 109.46001 * 58.64400 * 12 10 9 38 38 H 1.09001 * 109.49354 * 181.31771 * 13 12 10 39 39 H 1.09001 * 109.49361 * 301.37200 * 13 12 10 40 40 H 1.08995 * 109.50923 * 185.70556 * 14 13 12 41 41 H 1.08995 * 109.42956 * 65.41979 * 14 13 12 42 42 H 0.96995 * 119.99994 * 354.66221 * 19 18 16 43 43 H 1.09005 * 109.58784 * 66.43075 * 24 15 14 44 44 H 1.09000 * 109.58981 * 186.71461 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6905 1.1962 6 6 1.2650 -1.3358 2.1126 7 7 2.0518 -1.8246 3.0319 8 6 3.3231 -1.5166 2.7354 9 6 3.3234 -0.8026 1.5936 10 6 4.5293 -0.2406 0.8858 11 1 4.2926 -0.0820 -0.1663 12 6 5.6962 -1.2237 1.0042 13 6 6.9111 -0.6684 0.2574 14 6 7.3305 0.6586 0.8873 15 7 6.1728 1.5629 0.9136 16 6 6.2550 2.8174 0.3709 17 1 5.3651 3.3052 0.0012 18 6 7.4819 3.4622 0.2958 19 7 8.4403 3.1539 1.1437 20 14 7.7731 4.7673 -1.0086 21 1 9.1534 5.2989 -0.8775 22 1 7.5998 4.1678 -2.3560 23 1 6.7975 5.8724 -0.8294 24 6 4.9234 1.0933 1.5277 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1227 1.4451 -0.1266 29 1 1.5772 1.9915 -0.8201 30 1 1.7838 1.9185 0.9464 31 1 1.5956 -1.7153 -1.3017 32 1 1.7625 -0.1521 -2.1363 33 1 3.1252 -0.8107 -1.1996 34 1 0.1894 -1.4315 2.0887 35 1 4.1938 -1.7908 3.3126 36 1 5.9486 -1.3627 2.0554 37 1 5.4096 -2.1815 0.5701 38 1 7.7344 -1.3797 0.3224 39 1 6.6521 -0.5065 -0.7889 40 1 8.1299 1.1055 0.2963 41 1 7.6799 0.4827 1.9046 42 1 8.2656 2.5335 1.8686 43 1 5.0725 0.9536 2.5985 44 1 4.1357 1.8281 1.3614 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473898312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = 52.859273 kcal Electronic energy + Delta-G solvation = -23204.648700 eV Core-core repulsion = 20157.448354 eV Total energy + Delta-G solvation = -3047.200346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29422 -39.45249 -37.96932 -35.58718 -32.88297 -32.27638 -31.89436 -29.11540 -28.46097 -28.18275 -27.04629 -24.37997 -23.91176 -23.02633 -22.06639 -20.60067 -19.85079 -19.33939 -17.82305 -16.58567 -16.30790 -16.00434 -15.71950 -15.46122 -15.27268 -15.23987 -14.90549 -14.64387 -14.43523 -14.25630 -13.92166 -13.54552 -13.32935 -13.22421 -13.04522 -12.88202 -12.76393 -12.54834 -12.30906 -12.13885 -12.01024 -11.91715 -11.78448 -11.64585 -11.51068 -11.19281 -10.81407 -10.52433 -10.41783 -9.31405 -8.91198 -8.25579 -5.38685 1.12550 1.57915 1.65310 1.82734 1.84099 2.21451 2.65545 3.20683 3.41157 3.52318 3.72023 3.74143 3.84428 3.84981 3.90526 4.07916 4.19197 4.32679 4.42484 4.49231 4.54219 4.56654 4.65810 4.67228 4.71354 4.76658 4.80898 4.82156 4.85305 4.94857 5.00672 5.04294 5.11401 5.16635 5.20970 5.26885 5.30988 5.50061 5.57795 5.78115 5.83483 6.37689 6.39722 7.03737 7.15266 7.77275 8.21743 9.00123 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.020950 B = 0.005836 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.214231 B = 4796.637429 C = 5504.183669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 C -0.167 4.167 4 C -0.158 4.158 5 N -0.443 5.443 6 C 0.179 3.821 7 N -0.529 5.529 8 C -0.050 4.050 9 C -0.003 4.003 10 C -0.015 4.015 11 H 0.078 0.922 12 C -0.092 4.092 13 C -0.125 4.125 14 C 0.152 3.848 15 N -0.613 5.613 16 C -0.353 4.353 17 H 0.052 0.948 18 C -0.075 4.075 19 N -0.942 5.942 20 Si 1.112 2.888 21 H -0.293 1.293 22 H -0.277 1.277 23 H -0.276 1.276 24 C 0.163 3.837 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.235 0.765 35 H 0.161 0.839 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.001 0.999 42 H 0.253 0.747 43 H 0.001 0.999 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.134 -8.712 -5.958 19.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.068 3.932 3 C -0.224 4.224 4 C -0.216 4.216 5 N -0.126 5.126 6 C -0.103 4.103 7 N -0.247 5.247 8 C -0.197 4.197 9 C -0.120 4.120 10 C -0.036 4.036 11 H 0.096 0.904 12 C -0.130 4.130 13 C -0.163 4.163 14 C 0.026 3.974 15 N -0.337 5.337 16 C -0.483 4.483 17 H 0.070 0.930 18 C -0.271 4.271 19 N -0.584 5.584 20 Si 0.937 3.063 21 H -0.219 1.219 22 H -0.203 1.203 23 H -0.202 1.202 24 C 0.037 3.963 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.251 0.749 35 H 0.178 0.822 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.019 0.981 42 H 0.063 0.937 43 H 0.019 0.981 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.339 -8.034 -6.053 18.343 hybrid contribution -0.400 -0.336 0.599 0.795 sum -15.740 -8.370 -5.453 18.642 Atomic orbital electron populations 1.22154 0.89410 1.04405 1.04845 1.21105 0.97266 0.91881 0.82966 1.22413 1.02280 0.94600 1.03132 1.22269 1.01381 1.01417 0.96520 1.45849 1.05659 1.40433 1.20643 1.25403 0.99995 0.97808 0.87113 1.70223 1.02090 1.25109 1.27321 1.22055 0.95348 1.04818 0.97506 1.21103 0.85904 1.05705 0.99264 1.20018 0.89888 0.95157 0.98566 0.90362 1.21364 0.93603 0.97446 1.00557 1.21862 0.98231 0.96826 0.99428 1.20793 0.90159 0.90073 0.96345 1.44326 1.09235 1.12275 1.67857 1.20188 0.96871 0.94390 1.36809 0.92976 1.27149 0.94066 1.03098 1.02816 1.70900 1.37202 1.35920 1.14395 0.82892 0.75665 0.73781 0.73966 1.21935 1.20347 1.20234 1.20981 0.88333 0.93662 0.93324 0.91200 0.88198 0.90019 0.92778 0.88513 0.93112 0.90959 0.88653 0.93323 0.74881 0.82199 0.92318 0.90774 0.90356 0.92626 0.93406 0.98061 0.93682 0.98141 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 7.38 71.98 0.53 -1.31 16 2 C 0.15 3.02 1.05 3.60 0.00 3.02 16 3 C -0.17 -4.02 7.58 71.98 0.55 -3.47 16 4 C -0.16 -2.96 8.56 71.98 0.62 -2.34 16 5 N -0.44 -11.46 2.61 -470.73 -1.23 -12.68 16 6 C 0.18 4.49 11.52 180.26 2.08 6.57 16 7 N -0.53 -16.99 11.25 -200.31 -2.25 -19.25 16 8 C -0.05 -1.67 11.09 83.52 0.93 -0.75 16 9 C 0.00 -0.11 5.35 40.95 0.22 0.11 16 10 C -0.02 -0.52 1.64 -11.46 -0.02 -0.54 16 11 H 0.08 2.71 4.43 -2.39 -0.01 2.70 16 12 C -0.09 -3.01 4.76 30.62 0.15 -2.87 16 13 C -0.12 -4.56 6.06 30.53 0.19 -4.37 16 14 C 0.15 7.22 4.66 86.22 0.40 7.62 16 15 N -0.61 -30.82 2.87 -699.93 -2.01 -32.83 16 16 C -0.35 -19.60 9.50 84.03 0.80 -18.80 16 17 H 0.05 2.87 7.94 -2.91 -0.02 2.84 16 18 C -0.08 -4.25 4.68 84.86 0.40 -3.86 16 19 N -0.94 -57.69 12.38 21.65 0.27 -57.42 16 20 Si 1.11 50.41 29.99 68.60 2.06 52.46 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 C 0.16 7.01 5.40 86.36 0.47 7.47 16 25 H 0.07 0.86 8.05 -2.39 -0.02 0.84 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 0.78 7.67 -2.39 -0.02 0.77 16 28 H 0.05 1.68 4.21 -2.39 -0.01 1.67 16 29 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.16 5.56 -2.39 -0.01 1.15 16 34 H 0.24 3.76 7.15 -2.91 -0.02 3.74 16 35 H 0.16 5.18 7.48 -2.91 -0.02 5.16 16 36 H 0.06 1.95 7.42 -2.39 -0.02 1.94 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 2.57 6.23 -2.39 -0.01 2.55 16 41 H 0.00 0.07 7.88 -2.39 -0.02 0.05 16 42 H 0.25 15.92 6.70 -92.71 -0.62 15.30 16 43 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 44 H 0.05 2.20 5.88 -2.39 -0.01 2.18 16 Total: -1.00 -69.34 329.51 5.25 -64.09 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.12 Total: 19.13 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 7.29 Total: -13.51 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.22 Total: -122.18 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.06 Total: 52.46 kcal Total: -69.34 5.25 -64.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473898312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.949 kcal (2) G-P(sol) polarization free energy of solvation -69.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds