Wall clock time and date at job start Mon Mar 30 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47256 * 185.00661 * 3 2 1 5 5 H 1.48503 * 109.47439 * 305.00700 * 3 2 1 6 6 H 1.48501 * 109.46962 * 65.00268 * 3 2 1 7 7 C 1.37873 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00081 * 171.45605 * 7 2 1 9 9 C 1.50700 * 119.99785 * 351.45917 * 7 2 1 10 10 C 1.52998 * 115.55175 * 324.23264 * 9 7 2 11 11 N 1.46906 * 109.47164 * 306.25368 * 10 9 7 12 12 C 1.47557 * 110.97671 * 291.38486 * 11 10 9 13 13 C 1.50774 * 107.84656 * 159.18106 * 12 11 10 14 14 C 1.53535 * 111.89688 * 95.22024 * 13 12 11 15 15 C 1.54065 * 113.17593 * 297.43375 * 14 13 12 16 16 C 1.54431 * 108.29070 * 107.87766 * 15 14 13 17 17 C 1.54997 * 103.77504 * 87.96159 * 16 15 14 18 18 C 1.54889 * 102.35038 * 40.39650 * 17 16 15 19 19 C 1.54172 * 104.34792 * 322.19020 * 18 17 16 20 20 C 1.50458 * 113.92901 * 344.20046 * 15 14 13 21 21 C 1.39863 * 110.96212 * 162.66805 * 11 10 9 22 22 C 1.53003 * 117.50092 * 109.90708 * 9 7 2 23 23 C 1.53001 * 117.49969 * 178.57058 * 9 7 2 24 24 H 0.97002 * 120.00334 * 5.00320 * 1 2 3 25 25 H 1.09001 * 109.47749 * 186.24900 * 10 9 7 26 26 H 1.09008 * 109.46868 * 66.24892 * 10 9 7 27 27 H 1.08957 * 109.83793 * 278.92111 * 12 11 10 28 28 H 1.09017 * 109.75127 * 39.60221 * 12 11 10 29 29 H 1.08908 * 109.31730 * 333.65624 * 13 12 11 30 30 H 1.09310 * 108.68533 * 215.43470 * 13 12 11 31 31 H 1.09275 * 108.66643 * 176.33838 * 14 13 12 32 32 H 1.09216 * 108.89285 * 58.71375 * 14 13 12 33 33 H 1.08966 * 110.58562 * 206.13171 * 16 15 14 34 34 H 1.08840 * 110.72987 * 329.36990 * 16 15 14 35 35 H 1.08932 * 110.74442 * 282.19021 * 17 16 15 36 36 H 1.08905 * 110.79315 * 158.66548 * 17 16 15 37 37 H 1.08994 * 110.49210 * 203.31745 * 18 17 16 38 38 H 1.09040 * 110.43421 * 80.90882 * 18 17 16 39 39 H 1.08896 * 110.09907 * 261.56589 * 19 18 17 40 40 H 1.09005 * 110.03595 * 140.15020 * 19 18 17 41 41 H 1.09096 * 109.75233 * 318.99917 * 20 15 14 42 42 H 1.09471 * 109.14152 * 200.35627 * 20 15 14 43 43 H 1.09412 * 108.42471 * 313.19030 * 21 11 10 44 44 H 1.08742 * 109.07677 * 70.99032 * 21 11 10 45 45 H 1.08992 * 117.50074 * 214.99847 * 22 9 7 46 46 H 1.09000 * 117.49768 * 0.02562 * 22 9 7 47 47 H 1.09003 * 117.49566 * 359.97067 * 23 9 7 48 48 H 1.09000 * 117.50463 * 144.96904 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7045 1.3492 -0.1222 5 1 1.8010 2.4481 -1.1468 6 1 1.9842 2.3423 1.2689 7 6 2.0046 -1.1940 -0.0005 8 1 3.0756 -1.1991 -0.1395 9 6 1.2637 -2.4919 0.1927 10 6 0.0784 -2.4377 1.1586 11 7 0.5208 -1.8858 2.4462 12 6 1.4267 -2.8222 3.1390 13 6 2.2275 -2.0327 4.1433 14 6 1.5966 -2.0789 5.5423 15 6 0.1925 -1.4468 5.5954 16 6 -0.8437 -2.5808 5.7542 17 6 -0.9449 -2.7762 7.2884 18 6 -0.9096 -1.3185 7.8111 19 6 0.0969 -0.6054 6.8863 20 6 -0.1357 -0.5883 4.4042 21 6 -0.5708 -1.4579 3.2088 22 6 1.1502 -3.4270 -1.0130 23 6 2.0804 -3.7850 0.1488 24 1 -0.4851 0.8368 -0.0733 25 1 -0.3135 -3.4435 1.3099 26 1 -0.7025 -1.8026 0.7402 27 1 0.8454 -3.5896 3.6493 28 1 2.0970 -3.2886 2.4168 29 1 2.3026 -0.9983 3.8110 30 1 3.2350 -2.4534 4.1964 31 1 2.2503 -1.5478 6.2385 32 1 1.5287 -3.1199 5.8654 33 1 -1.8086 -2.2775 5.3488 34 1 -0.4927 -3.4932 5.2758 35 1 -0.0930 -3.3429 7.6622 36 1 -1.8824 -3.2618 7.5553 37 1 -0.5653 -1.2921 8.8448 38 1 -1.8954 -0.8601 7.7274 39 1 1.0721 -0.5486 7.3676 40 1 -0.2601 0.3965 6.6477 41 1 0.7353 0.0078 4.1281 42 1 -0.9513 0.0931 4.6667 43 1 -1.2309 -0.8672 2.5666 44 1 -1.1221 -2.3272 3.5592 45 1 0.2312 -4.0034 -1.1182 46 1 1.6118 -3.1035 -1.9460 47 1 3.1536 -3.6968 -0.0204 48 1 1.7736 -4.5968 0.8082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559992191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:44 Heat of formation + Delta-G solvation = 21.689360 kcal Electronic energy + Delta-G solvation = -23818.411104 eV Core-core repulsion = 20873.399472 eV Total energy + Delta-G solvation = -2945.011631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92878 -37.45474 -35.43435 -32.54315 -31.89778 -31.15921 -28.73169 -27.07323 -25.36970 -25.15202 -23.78738 -21.77839 -21.08645 -20.50968 -19.56017 -18.81997 -17.75702 -16.15828 -15.43091 -15.39630 -14.70335 -14.51244 -14.35612 -14.06330 -13.61378 -13.34390 -13.05177 -12.61669 -12.50054 -12.17028 -11.76501 -11.40389 -11.38587 -11.16116 -11.01907 -10.91942 -10.86756 -10.71256 -10.59768 -10.50245 -10.39206 -10.32213 -10.06551 -9.93717 -9.78156 -9.65513 -9.54718 -9.14658 -8.85169 -8.51102 -7.89975 -6.84799 -5.81791 -3.83711 3.37700 3.46389 3.49782 4.53472 4.63083 4.74987 4.84266 4.96272 5.27380 5.34630 5.42131 5.49874 5.56710 5.63722 5.70364 5.74144 5.81915 5.85954 5.93101 5.98514 6.02461 6.08276 6.14130 6.16387 6.21248 6.26317 6.33568 6.40349 6.43960 6.48369 6.49892 6.62936 6.67004 6.70102 6.72510 6.78834 6.85198 6.89764 7.03280 7.04751 7.12724 7.33144 7.44077 7.71550 8.12892 8.40122 8.66025 8.72604 9.10304 9.75892 11.20286 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.006284 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.752097 B = 4454.528744 C = 5091.943839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.090 3.910 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.467 4.467 8 H 0.052 0.948 9 C 0.069 3.931 10 C 0.110 3.890 11 N -0.515 5.515 12 C 0.069 3.931 13 C -0.117 4.117 14 C -0.103 4.103 15 C -0.054 4.054 16 C -0.112 4.112 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.120 4.120 20 C -0.101 4.101 21 C 0.085 3.915 22 C -0.209 4.209 23 C -0.220 4.220 24 H 0.255 0.745 25 H -0.018 1.018 26 H 0.113 0.887 27 H 0.013 0.987 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.005 0.995 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 -3.449 12.700 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.505 4.505 8 H 0.070 0.930 9 C 0.069 3.931 10 C -0.017 4.017 11 N -0.238 5.238 12 C -0.058 4.058 13 C -0.155 4.155 14 C -0.140 4.140 15 C -0.054 4.054 16 C -0.149 4.149 17 C -0.164 4.164 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.139 4.139 21 C -0.045 4.045 22 C -0.247 4.247 23 C -0.257 4.257 24 H 0.065 0.935 25 H 0.000 1.000 26 H 0.131 0.869 27 H 0.031 0.969 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.023 0.977 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.841 -2.901 12.705 13.161 hybrid contribution 0.085 0.106 0.152 0.204 sum -1.755 -2.795 12.857 13.274 Atomic orbital electron populations 1.69784 1.05907 1.25804 1.49999 1.24692 0.94497 0.98211 0.93843 0.86652 0.80161 0.84356 0.77289 1.20173 1.21707 1.20953 1.20289 0.92773 0.88912 1.48492 0.92970 1.18996 0.93611 0.88391 0.92141 1.21690 0.98496 0.93918 0.87577 1.58322 1.19726 1.41632 1.04099 1.21766 0.95765 0.92652 0.95639 1.21389 0.97693 1.02818 0.93555 1.22178 0.94693 0.99683 0.97471 1.20982 0.94970 0.94723 0.94718 1.22673 0.99151 0.98197 0.94925 1.22527 1.00881 0.96452 0.96526 1.22309 0.99344 0.95923 0.98465 1.22601 0.99014 0.98836 0.95277 1.21484 1.01435 0.97387 0.93576 1.20796 0.92680 0.96806 0.94208 1.22966 0.99324 1.07945 0.94512 1.22946 0.96819 1.02556 1.03390 0.93497 1.00004 0.86887 0.96877 0.90094 0.90141 0.93249 0.93033 0.93062 0.91642 0.91836 0.91885 0.92220 0.92400 0.92065 0.92041 0.92033 0.90719 0.92895 0.91379 0.97691 0.92125 0.90593 0.90989 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.54 10.70 55.43 0.59 -22.95 16 2 C 0.09 2.40 5.19 -17.82 -0.09 2.31 16 3 Si 0.89 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.47 -12.52 8.72 -34.44 -0.30 -12.82 16 8 H 0.05 1.44 7.83 -52.49 -0.41 1.03 16 9 C 0.07 1.69 1.55 -155.66 -0.24 1.45 16 10 C 0.11 2.54 4.03 -3.82 -0.02 2.53 16 11 N -0.52 -10.82 3.55 -240.19 -0.85 -11.67 16 12 C 0.07 1.30 5.27 -4.58 -0.02 1.28 16 13 C -0.12 -1.98 5.29 -27.57 -0.15 -2.12 16 14 C -0.10 -1.47 4.88 -25.90 -0.13 -1.59 16 15 C -0.05 -0.76 0.61 -153.74 -0.09 -0.85 16 16 C -0.11 -1.49 3.95 -24.93 -0.10 -1.59 16 17 C -0.13 -1.41 6.84 -24.68 -0.17 -1.58 16 18 C -0.12 -1.33 6.81 -25.12 -0.17 -1.50 16 19 C -0.12 -1.47 6.01 -25.39 -0.15 -1.62 16 20 C -0.10 -1.68 4.35 -27.43 -0.12 -1.79 16 21 C 0.09 1.61 4.72 -6.88 -0.03 1.58 16 22 C -0.21 -4.78 9.96 -26.69 -0.27 -5.05 16 23 C -0.22 -4.80 8.19 -26.69 -0.22 -5.01 16 24 H 0.25 6.65 8.32 -40.82 -0.34 6.31 16 25 H -0.02 -0.41 8.04 -51.93 -0.42 -0.82 16 26 H 0.11 2.89 5.48 -51.92 -0.28 2.61 16 27 H 0.01 0.24 6.66 -51.95 -0.35 -0.11 16 28 H 0.08 1.64 5.15 -51.92 -0.27 1.37 16 29 H 0.08 1.55 6.42 -51.98 -0.33 1.22 16 30 H 0.05 0.78 8.17 -51.75 -0.42 0.36 16 31 H 0.05 0.69 6.96 -51.77 -0.36 0.32 16 32 H 0.05 0.70 7.37 -51.81 -0.38 0.32 16 33 H 0.06 0.90 7.13 -51.95 -0.37 0.53 16 34 H 0.06 0.90 6.44 -52.02 -0.33 0.57 16 35 H 0.06 0.69 8.14 -51.97 -0.42 0.26 16 36 H 0.06 0.61 8.13 -51.98 -0.42 0.19 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.65 8.15 -51.91 -0.42 0.22 16 39 H 0.06 0.73 6.94 -51.99 -0.36 0.36 16 40 H 0.06 0.76 7.37 -51.93 -0.38 0.38 16 41 H 0.07 1.40 6.60 -51.87 -0.34 1.05 16 42 H 0.05 0.83 7.65 -51.66 -0.40 0.43 16 43 H 0.07 1.43 7.62 -51.70 -0.39 1.03 16 44 H 0.01 0.10 5.56 -52.07 -0.29 -0.19 16 45 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 47 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 48 H 0.06 1.27 7.78 -51.93 -0.40 0.86 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -26.09 341.93 -10.99 -37.07 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.59 Total: 2.57 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -2.27 Total: -26.39 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.26 Total: -34.62 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.09 -10.99 -37.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559992191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.763 kcal (2) G-P(sol) polarization free energy of solvation -26.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds