Wall clock time and date at job start Mon Mar 30 2020 02:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47256 * 185.00661 * 3 2 1 5 5 H 1.48503 * 109.47439 * 305.00700 * 3 2 1 6 6 H 1.48501 * 109.46962 * 65.00268 * 3 2 1 7 7 C 1.37873 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00081 * 171.45605 * 7 2 1 9 9 C 1.50700 * 119.99785 * 351.45917 * 7 2 1 10 10 C 1.52998 * 115.55175 * 324.23264 * 9 7 2 11 11 N 1.46906 * 109.47164 * 306.25368 * 10 9 7 12 12 C 1.47557 * 110.97671 * 291.38486 * 11 10 9 13 13 C 1.50774 * 107.84656 * 159.18106 * 12 11 10 14 14 C 1.53535 * 111.89688 * 95.22024 * 13 12 11 15 15 C 1.54065 * 113.17593 * 297.43375 * 14 13 12 16 16 C 1.54431 * 108.29070 * 107.87766 * 15 14 13 17 17 C 1.54997 * 103.77504 * 87.96159 * 16 15 14 18 18 C 1.54889 * 102.35038 * 40.39650 * 17 16 15 19 19 C 1.54172 * 104.34792 * 322.19020 * 18 17 16 20 20 C 1.50458 * 113.92901 * 344.20046 * 15 14 13 21 21 C 1.39863 * 110.96212 * 162.66805 * 11 10 9 22 22 C 1.53003 * 117.50092 * 109.90708 * 9 7 2 23 23 C 1.53001 * 117.49969 * 178.57058 * 9 7 2 24 24 H 0.97002 * 120.00334 * 5.00320 * 1 2 3 25 25 H 1.09001 * 109.47749 * 186.24900 * 10 9 7 26 26 H 1.09008 * 109.46868 * 66.24892 * 10 9 7 27 27 H 1.08957 * 109.83793 * 278.92111 * 12 11 10 28 28 H 1.09017 * 109.75127 * 39.60221 * 12 11 10 29 29 H 1.08908 * 109.31730 * 333.65624 * 13 12 11 30 30 H 1.09310 * 108.68533 * 215.43470 * 13 12 11 31 31 H 1.09275 * 108.66643 * 176.33838 * 14 13 12 32 32 H 1.09216 * 108.89285 * 58.71375 * 14 13 12 33 33 H 1.08966 * 110.58562 * 206.13171 * 16 15 14 34 34 H 1.08840 * 110.72987 * 329.36990 * 16 15 14 35 35 H 1.08932 * 110.74442 * 282.19021 * 17 16 15 36 36 H 1.08905 * 110.79315 * 158.66548 * 17 16 15 37 37 H 1.08994 * 110.49210 * 203.31745 * 18 17 16 38 38 H 1.09040 * 110.43421 * 80.90882 * 18 17 16 39 39 H 1.08896 * 110.09907 * 261.56589 * 19 18 17 40 40 H 1.09005 * 110.03595 * 140.15020 * 19 18 17 41 41 H 1.09096 * 109.75233 * 318.99917 * 20 15 14 42 42 H 1.09471 * 109.14152 * 200.35627 * 20 15 14 43 43 H 1.09412 * 108.42471 * 313.19030 * 21 11 10 44 44 H 1.08742 * 109.07677 * 70.99032 * 21 11 10 45 45 H 1.08992 * 117.50074 * 214.99847 * 22 9 7 46 46 H 1.09000 * 117.49768 * 0.02562 * 22 9 7 47 47 H 1.09003 * 117.49566 * 359.97067 * 23 9 7 48 48 H 1.09000 * 117.50463 * 144.96904 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7045 1.3492 -0.1222 5 1 1.8010 2.4481 -1.1468 6 1 1.9842 2.3423 1.2689 7 6 2.0046 -1.1940 -0.0005 8 1 3.0756 -1.1991 -0.1395 9 6 1.2637 -2.4919 0.1927 10 6 0.0784 -2.4377 1.1586 11 7 0.5208 -1.8858 2.4462 12 6 1.4267 -2.8222 3.1390 13 6 2.2275 -2.0327 4.1433 14 6 1.5966 -2.0789 5.5423 15 6 0.1925 -1.4468 5.5954 16 6 -0.8437 -2.5808 5.7542 17 6 -0.9449 -2.7762 7.2884 18 6 -0.9096 -1.3185 7.8111 19 6 0.0969 -0.6054 6.8863 20 6 -0.1357 -0.5883 4.4042 21 6 -0.5708 -1.4579 3.2088 22 6 1.1502 -3.4270 -1.0130 23 6 2.0804 -3.7850 0.1488 24 1 -0.4851 0.8368 -0.0733 25 1 -0.3135 -3.4435 1.3099 26 1 -0.7025 -1.8026 0.7402 27 1 0.8454 -3.5896 3.6493 28 1 2.0970 -3.2886 2.4168 29 1 2.3026 -0.9983 3.8110 30 1 3.2350 -2.4534 4.1964 31 1 2.2503 -1.5478 6.2385 32 1 1.5287 -3.1199 5.8654 33 1 -1.8086 -2.2775 5.3488 34 1 -0.4927 -3.4932 5.2758 35 1 -0.0930 -3.3429 7.6622 36 1 -1.8824 -3.2618 7.5553 37 1 -0.5653 -1.2921 8.8448 38 1 -1.8954 -0.8601 7.7274 39 1 1.0721 -0.5486 7.3676 40 1 -0.2601 0.3965 6.6477 41 1 0.7353 0.0078 4.1281 42 1 -0.9513 0.0931 4.6667 43 1 -1.2309 -0.8672 2.5666 44 1 -1.1221 -2.3272 3.5592 45 1 0.2312 -4.0034 -1.1182 46 1 1.6118 -3.1035 -1.9460 47 1 3.1536 -3.6968 -0.0204 48 1 1.7736 -4.5968 0.8082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559992191.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:43 Heat of formation + Delta-G solvation = 10.928669 kcal Electronic energy + Delta-G solvation = -23818.877722 eV Core-core repulsion = 20873.399472 eV Total energy + Delta-G solvation = -2945.478250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19965 -39.03190 -37.00203 -34.06422 -33.76031 -32.47376 -29.72522 -28.54761 -27.36455 -26.44363 -25.38685 -23.10943 -22.80436 -21.56632 -20.93269 -20.72742 -18.94340 -18.05880 -16.80190 -16.65065 -16.44318 -16.05778 -15.74946 -15.43946 -15.11024 -14.93943 -14.45038 -14.06067 -13.86076 -13.65884 -13.21597 -13.05092 -12.83182 -12.78245 -12.66966 -12.36825 -12.26970 -12.08845 -11.97146 -11.89414 -11.84028 -11.65565 -11.60804 -11.31493 -11.12742 -10.99501 -10.91022 -10.82544 -10.80074 -10.37201 -9.84776 -8.47833 -7.85432 -5.93073 1.43145 1.48467 1.55320 2.53069 3.15325 3.44756 3.65063 3.75703 3.78270 3.81659 4.23517 4.28525 4.34593 4.37736 4.43278 4.45301 4.57091 4.59574 4.65262 4.70456 4.77391 4.82231 4.86293 4.88481 4.91522 4.94320 4.98696 5.04393 5.06367 5.10722 5.16556 5.19231 5.25027 5.28655 5.33499 5.44141 5.46543 5.51139 5.53396 5.57174 5.60897 5.62743 5.73242 5.75198 6.12092 6.52701 6.80299 7.04695 7.13869 7.67614 9.13707 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.006284 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.752097 B = 4454.528744 C = 5091.943839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.482 4.482 8 H 0.037 0.963 9 C 0.041 3.959 10 C 0.121 3.879 11 N -0.529 5.529 12 C 0.073 3.927 13 C -0.112 4.112 14 C -0.097 4.097 15 C -0.055 4.055 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.091 4.091 21 C 0.090 3.910 22 C -0.210 4.210 23 C -0.195 4.195 24 H 0.253 0.747 25 H -0.014 1.014 26 H 0.085 0.915 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.016 0.984 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 -4.160 14.888 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.762 3.238 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.041 3.959 10 C -0.006 4.006 11 N -0.252 5.252 12 C -0.053 4.053 13 C -0.150 4.150 14 C -0.134 4.134 15 C -0.055 4.055 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.129 4.129 21 C -0.040 4.040 22 C -0.249 4.249 23 C -0.232 4.232 24 H 0.063 0.937 25 H 0.004 0.996 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.033 0.967 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.604 -3.616 14.894 15.411 hybrid contribution 0.018 0.313 -0.591 0.669 sum -1.587 -3.303 14.304 14.766 Atomic orbital electron populations 1.69908 1.06527 1.26031 1.50353 1.25166 0.95124 1.00273 0.93865 0.85911 0.79123 0.81708 0.77054 1.20247 1.21398 1.21096 1.20406 0.92181 0.90456 1.48903 0.94502 1.19082 0.94831 0.88529 0.93500 1.21409 0.97264 0.93418 0.88483 1.58291 1.20564 1.42395 1.03956 1.21745 0.95275 0.92751 0.95570 1.21316 0.98343 1.00715 0.94645 1.22135 0.94765 1.00728 0.95791 1.20950 0.95223 0.94961 0.94374 1.22620 0.98264 0.97227 0.96826 1.22500 1.01879 0.96920 0.94403 1.22298 0.99034 0.95310 0.98968 1.22563 1.00065 0.98384 0.94503 1.21383 1.00508 0.97257 0.93776 1.20755 0.91925 0.96977 0.94300 1.22962 1.00192 1.07607 0.94101 1.22891 0.96500 1.01389 1.02451 0.93707 0.99638 0.89703 0.95730 0.91598 0.92897 0.92110 0.91560 0.91795 0.92488 0.92770 0.91121 0.91061 0.90663 0.91858 0.91182 0.92461 0.93147 0.92221 0.94325 0.96679 0.90925 0.91376 0.90959 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.89 10.70 21.45 0.23 -48.66 16 2 C 0.06 3.07 5.19 84.65 0.44 3.50 16 3 Si 0.93 44.22 29.55 68.60 2.03 46.24 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.48 -26.24 8.72 25.60 0.22 -26.02 16 8 H 0.04 2.07 7.83 -2.91 -0.02 2.04 16 9 C 0.04 2.03 1.55 -52.93 -0.08 1.95 16 10 C 0.12 5.71 4.03 86.30 0.35 6.05 16 11 N -0.53 -22.48 3.55 -913.83 -3.24 -25.72 16 12 C 0.07 2.72 5.27 85.45 0.45 3.17 16 13 C -0.11 -3.69 5.29 30.05 0.16 -3.53 16 14 C -0.10 -2.54 4.88 31.13 0.15 -2.39 16 15 C -0.06 -1.45 0.61 -51.69 -0.03 -1.48 16 16 C -0.11 -2.74 3.95 31.76 0.13 -2.62 16 17 C -0.12 -2.27 6.84 31.92 0.22 -2.05 16 18 C -0.12 -2.17 6.81 31.64 0.22 -1.95 16 19 C -0.12 -2.58 6.01 31.46 0.19 -2.39 16 20 C -0.09 -3.02 4.35 30.14 0.13 -2.89 16 21 C 0.09 3.47 4.72 87.94 0.42 3.89 16 22 C -0.21 -9.55 9.96 30.62 0.30 -9.24 16 23 C -0.20 -8.33 8.19 30.62 0.25 -8.08 16 24 H 0.25 13.51 8.32 -92.71 -0.77 12.74 16 25 H -0.01 -0.64 8.04 -2.39 -0.02 -0.66 16 26 H 0.08 4.48 5.48 -2.38 -0.01 4.47 16 27 H 0.02 0.85 6.66 -2.41 -0.02 0.84 16 28 H 0.07 2.62 5.15 -2.38 -0.01 2.61 16 29 H 0.05 2.04 6.42 -2.44 -0.02 2.03 16 30 H 0.06 1.84 8.17 -2.22 -0.02 1.82 16 31 H 0.07 1.57 6.96 -2.24 -0.02 1.55 16 32 H 0.06 1.55 7.37 -2.27 -0.02 1.53 16 33 H 0.06 1.48 7.13 -2.41 -0.02 1.47 16 34 H 0.05 1.42 6.44 -2.47 -0.02 1.41 16 35 H 0.07 1.26 8.14 -2.42 -0.02 1.24 16 36 H 0.07 1.21 8.13 -2.44 -0.02 1.19 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.14 8.15 -2.37 -0.02 1.12 16 39 H 0.07 1.43 6.94 -2.44 -0.02 1.41 16 40 H 0.06 1.30 7.37 -2.38 -0.02 1.29 16 41 H 0.05 1.91 6.60 -2.34 -0.02 1.90 16 42 H 0.06 1.86 7.65 -2.14 -0.02 1.84 16 43 H 0.04 1.69 7.62 -2.17 -0.02 1.67 16 44 H 0.02 0.56 5.56 -2.52 -0.01 0.55 16 45 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 48 H 0.08 3.15 7.78 -2.39 -0.02 3.13 16 Total: -1.00 -55.91 341.93 3.44 -52.47 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.92 Total: 19.74 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 3.51 Total: -44.08 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -3.01 Total: -74.37 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -55.91 3.44 -52.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559992191.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.397 kcal (2) G-P(sol) polarization free energy of solvation -55.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds