Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 112.74574 * 2 1 4 4 C 1.53001 * 109.47043 * 54.72694 * 3 2 1 5 5 C 1.53001 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47217 * 60.00260 * 5 4 3 7 7 C 1.53001 * 109.46902 * 299.99827 * 6 5 4 8 8 C 1.52997 * 109.47275 * 294.72576 * 3 2 1 9 9 C 1.53513 * 113.47541 * 130.84980 * 2 1 3 10 10 C 1.53507 * 83.57560 * 88.74459 * 9 2 1 11 11 N 1.47481 * 87.93634 * 26.02410 * 10 9 2 12 12 C 1.46897 * 111.00131 * 221.30200 * 11 10 9 13 13 C 1.53005 * 109.46776 * 265.96710 * 12 11 10 14 14 C 1.50699 * 115.54933 * 325.58092 * 13 12 11 15 15 H 1.07997 * 120.00020 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99919 * 180.27131 * 14 13 12 17 17 N 1.31512 * 119.99953 * 359.73382 * 16 14 13 18 18 Si 1.86796 * 120.00170 * 179.72412 * 16 14 13 19 19 H 1.48506 * 109.46978 * 90.00494 * 18 16 14 20 20 H 1.48504 * 109.47450 * 210.00474 * 18 16 14 21 21 H 1.48503 * 109.47171 * 330.00747 * 18 16 14 22 22 C 1.52995 * 117.49839 * 111.25458 * 13 12 11 23 23 C 1.52996 * 117.49875 * 179.91494 * 13 12 11 24 24 H 1.09002 * 109.46735 * 181.09976 * 1 2 3 25 25 H 1.08997 * 109.46721 * 301.10281 * 1 2 3 26 26 H 1.09002 * 109.47177 * 61.10481 * 1 2 3 27 27 H 1.09002 * 109.47477 * 174.72581 * 3 2 1 28 28 H 1.09002 * 109.46892 * 300.00246 * 4 3 2 29 29 H 1.09000 * 109.47340 * 60.00095 * 4 3 2 30 30 H 1.08995 * 109.47486 * 299.99522 * 5 4 3 31 31 H 1.09008 * 109.46979 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47654 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47922 * 59.99494 * 6 5 4 34 34 H 1.08997 * 109.47321 * 299.99978 * 7 6 5 35 35 H 1.09000 * 109.47340 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47460 * 300.00096 * 8 3 2 37 37 H 1.09006 * 109.47291 * 59.99854 * 8 3 2 38 38 H 1.09002 * 114.16810 * 202.39252 * 9 2 1 39 39 H 1.08995 * 114.17110 * 334.90500 * 9 2 1 40 40 H 1.08996 * 113.47473 * 271.25648 * 10 9 2 41 41 H 1.08999 * 113.47737 * 140.79057 * 10 9 2 42 42 H 1.09001 * 109.47221 * 145.97006 * 12 11 10 43 43 H 1.08993 * 109.47398 * 25.96688 * 12 11 10 44 44 H 0.97001 * 120.00086 * 179.97438 * 17 16 14 45 45 H 1.09003 * 117.49744 * 215.00451 * 22 13 12 46 46 H 1.09004 * 117.49942 * 0.02562 * 22 13 12 47 47 H 1.09007 * 117.49874 * 359.97438 * 23 13 12 48 48 H 1.09002 * 117.50294 * 144.97728 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1216 1.4110 0.0000 4 6 1.5505 2.2034 1.1777 5 6 2.1426 3.6142 1.1781 6 6 1.7838 4.3182 -0.1321 7 6 2.3549 3.5258 -1.3097 8 6 1.7623 2.1147 -1.3102 9 6 2.1415 -0.9210 1.0651 10 6 2.0425 -1.9802 -0.0415 11 7 2.1176 -0.8834 -1.0245 12 6 1.1775 -1.1034 -2.1317 13 6 1.8996 -1.8097 -3.2809 14 6 3.3466 -1.4329 -3.4687 15 1 3.8053 -0.7078 -2.8128 16 6 4.0835 -2.0100 -4.4811 17 7 3.5250 -2.8933 -5.2796 18 14 5.8749 -1.5373 -4.7188 19 1 6.7362 -2.4407 -3.9141 20 1 6.2333 -1.6609 -6.1546 21 1 6.0796 -0.1345 -4.2764 22 6 1.5011 -3.2556 -3.5831 23 6 1.0850 -2.1317 -4.5353 24 1 -0.3633 -1.0275 0.0197 25 1 -0.3633 0.5309 0.8799 26 1 -0.3634 0.4966 -0.8997 27 1 3.2058 1.3505 0.0945 28 1 0.4663 2.2639 1.0832 29 1 1.8065 1.7022 2.1111 30 1 3.2267 3.5533 1.2728 31 1 1.7354 4.1789 2.0169 32 1 2.2059 5.3232 -0.1321 33 1 0.6997 4.3792 -0.2269 34 1 3.4390 3.4649 -1.2151 35 1 2.0989 4.0271 -2.2432 36 1 2.1691 1.5502 -2.1492 37 1 0.6781 2.1752 -1.4047 38 1 3.1627 -0.6626 1.3455 39 1 1.4933 -1.1044 1.9219 40 1 1.0892 -2.5087 -0.0526 41 1 2.8989 -2.6536 -0.0760 42 1 0.7939 -0.1439 -2.4787 43 1 0.3494 -1.7228 -1.7876 44 1 4.0433 -3.2990 -5.9921 45 1 2.2856 -3.9344 -3.9177 46 1 0.7243 -3.7036 -2.9635 47 1 0.0345 -1.8407 -4.5417 48 1 1.5955 -2.0707 -5.4965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560096346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = 46.304647 kcal Electronic energy + Delta-G solvation = -23546.063499 eV Core-core repulsion = 20602.119267 eV Total energy + Delta-G solvation = -2943.944232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68450 -37.67420 -36.16494 -31.74419 -31.32828 -30.63045 -29.32121 -28.18640 -25.47656 -24.35877 -23.43136 -22.28702 -21.44614 -20.56993 -19.43518 -18.79869 -17.69943 -15.95046 -15.73434 -15.07347 -14.88725 -14.71176 -14.18524 -14.05195 -13.93488 -13.16398 -13.13369 -12.71632 -12.28244 -12.16881 -12.03324 -11.92805 -11.84549 -11.31880 -11.14253 -10.96031 -10.87966 -10.80463 -10.68427 -10.57546 -10.53469 -10.38388 -10.14898 -9.97862 -9.87988 -9.69888 -9.45331 -9.24773 -8.63370 -8.19163 -7.91187 -7.88833 -5.79421 -3.80248 3.38037 3.44667 3.49255 4.44677 4.54004 4.77208 4.86962 4.95308 5.01870 5.15000 5.23024 5.38366 5.46604 5.53802 5.62759 5.63622 5.72896 5.73729 5.77204 5.79957 5.82599 5.91055 6.02693 6.06844 6.12308 6.15648 6.20451 6.22048 6.29280 6.30206 6.34541 6.37757 6.48337 6.50690 6.59394 6.66053 6.77557 6.81432 6.84781 7.10475 7.23947 7.30767 7.42673 7.76866 8.01154 8.21740 8.33061 8.74211 9.20681 9.73446 11.17607 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.006128 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.073498 B = 4568.311382 C = 5256.138635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 C -0.055 4.055 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.115 4.115 9 C -0.140 4.140 10 C 0.005 3.995 11 N -0.424 5.424 12 C 0.069 3.931 13 C 0.027 3.973 14 C -0.441 4.441 15 H 0.073 0.927 16 C 0.048 3.952 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.275 1.275 22 C -0.192 4.192 23 C -0.192 4.192 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.022 0.978 44 H 0.254 0.746 45 H 0.107 0.893 46 H 0.034 0.966 47 H 0.036 0.964 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 9.321 12.560 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.041 4.041 3 C -0.074 4.074 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.177 4.177 10 C -0.124 4.124 11 N -0.145 5.145 12 C -0.059 4.059 13 C 0.027 3.973 14 C -0.479 4.479 15 H 0.092 0.908 16 C -0.151 4.151 17 N -0.529 5.529 18 Si 0.722 3.278 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.200 1.200 22 C -0.230 4.230 23 C -0.231 4.231 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.064 0.936 45 H 0.126 0.874 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.528 9.380 12.024 15.908 hybrid contribution -0.016 -0.248 -0.089 0.264 sum -4.545 9.133 11.935 15.700 Atomic orbital electron populations 1.22085 0.95414 1.01724 1.02118 1.22705 0.92947 0.94498 0.93925 1.20903 1.00121 0.92038 0.94302 1.21600 1.00175 0.94998 0.98303 1.21512 1.00802 0.96114 0.97064 1.21533 1.00565 0.98267 0.95178 1.21536 1.00462 0.96148 0.97472 1.21590 0.99997 0.95053 0.98596 1.23259 1.01267 0.97224 0.95985 1.23636 1.01182 0.95355 0.92221 1.69084 1.39162 1.04499 1.01753 1.22150 0.92372 0.98672 0.92750 1.18940 0.94419 0.93178 0.90789 1.20660 0.92840 1.22191 1.12225 0.90838 1.25057 0.98164 0.95581 0.96273 1.70032 1.35338 1.28709 1.18818 0.86576 0.85619 0.78854 0.76789 1.21050 1.21704 1.19963 1.22854 1.01623 0.94803 1.03745 1.22822 0.95314 1.05712 0.99239 0.92686 0.92212 0.91825 0.90743 0.92144 0.92380 0.92171 0.92687 0.92734 0.92420 0.92107 0.92447 0.90116 0.92852 0.89452 0.91797 0.92447 0.90050 0.92240 0.95983 0.93566 0.87443 0.94723 0.94528 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 7.00 37.16 0.26 -1.82 16 2 C 0.05 0.74 0.43 -135.32 -0.06 0.68 16 3 C -0.05 -0.76 1.88 -90.62 -0.17 -0.93 16 4 C -0.11 -1.27 4.71 -26.73 -0.13 -1.40 16 5 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 6 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 7 C -0.12 -1.52 5.92 -26.70 -0.16 -1.68 16 8 C -0.11 -1.68 4.29 -26.71 -0.11 -1.80 16 9 C -0.14 -1.93 7.37 -26.20 -0.19 -2.13 16 10 C 0.01 0.09 7.38 -7.55 -0.06 0.03 16 11 N -0.42 -7.98 4.69 -228.64 -1.07 -9.05 16 12 C 0.07 1.41 3.77 -3.82 -0.01 1.40 16 13 C 0.03 0.69 2.52 -155.66 -0.39 0.29 16 14 C -0.44 -12.07 8.70 -34.44 -0.30 -12.37 16 15 H 0.07 2.03 7.22 -52.49 -0.38 1.65 16 16 C 0.05 1.34 5.27 -17.82 -0.09 1.25 16 17 N -0.89 -25.34 8.59 55.43 0.48 -24.86 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.19 -4.90 9.31 -26.70 -0.25 -5.15 16 23 C -0.19 -4.90 9.38 -26.70 -0.25 -5.15 16 24 H 0.05 0.75 6.28 -51.93 -0.33 0.43 16 25 H 0.06 0.68 6.62 -51.93 -0.34 0.34 16 26 H 0.06 0.89 5.96 -51.93 -0.31 0.58 16 27 H 0.07 1.15 8.09 -51.93 -0.42 0.72 16 28 H 0.06 0.67 6.60 -51.93 -0.34 0.33 16 29 H 0.06 0.62 7.99 -51.93 -0.42 0.21 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.46 7.27 -51.93 -0.38 1.08 16 37 H 0.05 0.76 6.88 -51.93 -0.36 0.40 16 38 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 39 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 40 H 0.06 0.94 6.58 -51.93 -0.34 0.60 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.06 1.21 6.11 -51.93 -0.32 0.89 16 43 H 0.02 0.44 6.01 -51.93 -0.31 0.13 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.11 3.04 6.30 -51.93 -0.33 2.71 16 46 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 47 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 48 H 0.11 3.08 6.27 -51.93 -0.33 2.76 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -27.92 345.79 -11.31 -39.23 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -8.67 Total: 4.26 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: -2.23 Total: -31.58 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: -0.60 Total: -33.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.92 -11.31 -39.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560096346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.535 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds