Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 112.74574 * 2 1 4 4 C 1.53001 * 109.47043 * 54.72694 * 3 2 1 5 5 C 1.53001 * 109.47043 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47217 * 60.00260 * 5 4 3 7 7 C 1.53001 * 109.46902 * 299.99827 * 6 5 4 8 8 C 1.52997 * 109.47275 * 294.72576 * 3 2 1 9 9 C 1.53513 * 113.47541 * 130.84980 * 2 1 3 10 10 C 1.53507 * 83.57560 * 88.74459 * 9 2 1 11 11 N 1.47481 * 87.93634 * 26.02410 * 10 9 2 12 12 C 1.46897 * 111.00131 * 221.30200 * 11 10 9 13 13 C 1.53005 * 109.46776 * 265.96710 * 12 11 10 14 14 C 1.50699 * 115.54933 * 325.58092 * 13 12 11 15 15 H 1.07997 * 120.00020 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99919 * 180.27131 * 14 13 12 17 17 N 1.31512 * 119.99953 * 359.73382 * 16 14 13 18 18 Si 1.86796 * 120.00170 * 179.72412 * 16 14 13 19 19 H 1.48506 * 109.46978 * 90.00494 * 18 16 14 20 20 H 1.48504 * 109.47450 * 210.00474 * 18 16 14 21 21 H 1.48503 * 109.47171 * 330.00747 * 18 16 14 22 22 C 1.52995 * 117.49839 * 111.25458 * 13 12 11 23 23 C 1.52996 * 117.49875 * 179.91494 * 13 12 11 24 24 H 1.09002 * 109.46735 * 181.09976 * 1 2 3 25 25 H 1.08997 * 109.46721 * 301.10281 * 1 2 3 26 26 H 1.09002 * 109.47177 * 61.10481 * 1 2 3 27 27 H 1.09002 * 109.47477 * 174.72581 * 3 2 1 28 28 H 1.09002 * 109.46892 * 300.00246 * 4 3 2 29 29 H 1.09000 * 109.47340 * 60.00095 * 4 3 2 30 30 H 1.08995 * 109.47486 * 299.99522 * 5 4 3 31 31 H 1.09008 * 109.46979 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47654 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47922 * 59.99494 * 6 5 4 34 34 H 1.08997 * 109.47321 * 299.99978 * 7 6 5 35 35 H 1.09000 * 109.47340 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.47460 * 300.00096 * 8 3 2 37 37 H 1.09006 * 109.47291 * 59.99854 * 8 3 2 38 38 H 1.09002 * 114.16810 * 202.39252 * 9 2 1 39 39 H 1.08995 * 114.17110 * 334.90500 * 9 2 1 40 40 H 1.08996 * 113.47473 * 271.25648 * 10 9 2 41 41 H 1.08999 * 113.47737 * 140.79057 * 10 9 2 42 42 H 1.09001 * 109.47221 * 145.97006 * 12 11 10 43 43 H 1.08993 * 109.47398 * 25.96688 * 12 11 10 44 44 H 0.97001 * 120.00086 * 179.97438 * 17 16 14 45 45 H 1.09003 * 117.49744 * 215.00451 * 22 13 12 46 46 H 1.09004 * 117.49942 * 0.02562 * 22 13 12 47 47 H 1.09007 * 117.49874 * 359.97438 * 23 13 12 48 48 H 1.09002 * 117.50294 * 144.97728 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1216 1.4110 0.0000 4 6 1.5505 2.2034 1.1777 5 6 2.1426 3.6142 1.1781 6 6 1.7838 4.3182 -0.1321 7 6 2.3549 3.5258 -1.3097 8 6 1.7623 2.1147 -1.3102 9 6 2.1415 -0.9210 1.0651 10 6 2.0425 -1.9802 -0.0415 11 7 2.1176 -0.8834 -1.0245 12 6 1.1775 -1.1034 -2.1317 13 6 1.8996 -1.8097 -3.2809 14 6 3.3466 -1.4329 -3.4687 15 1 3.8053 -0.7078 -2.8128 16 6 4.0835 -2.0100 -4.4811 17 7 3.5250 -2.8933 -5.2796 18 14 5.8749 -1.5373 -4.7188 19 1 6.7362 -2.4407 -3.9141 20 1 6.2333 -1.6609 -6.1546 21 1 6.0796 -0.1345 -4.2764 22 6 1.5011 -3.2556 -3.5831 23 6 1.0850 -2.1317 -4.5353 24 1 -0.3633 -1.0275 0.0197 25 1 -0.3633 0.5309 0.8799 26 1 -0.3634 0.4966 -0.8997 27 1 3.2058 1.3505 0.0945 28 1 0.4663 2.2639 1.0832 29 1 1.8065 1.7022 2.1111 30 1 3.2267 3.5533 1.2728 31 1 1.7354 4.1789 2.0169 32 1 2.2059 5.3232 -0.1321 33 1 0.6997 4.3792 -0.2269 34 1 3.4390 3.4649 -1.2151 35 1 2.0989 4.0271 -2.2432 36 1 2.1691 1.5502 -2.1492 37 1 0.6781 2.1752 -1.4047 38 1 3.1627 -0.6626 1.3455 39 1 1.4933 -1.1044 1.9219 40 1 1.0892 -2.5087 -0.0526 41 1 2.8989 -2.6536 -0.0760 42 1 0.7939 -0.1439 -2.4787 43 1 0.3494 -1.7228 -1.7876 44 1 4.0433 -3.2990 -5.9921 45 1 2.2856 -3.9344 -3.9177 46 1 0.7243 -3.7036 -2.9635 47 1 0.0345 -1.8407 -4.5417 48 1 1.5955 -2.0707 -5.4965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560096346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = 32.880482 kcal Electronic energy + Delta-G solvation = -23546.645615 eV Core-core repulsion = 20602.119267 eV Total energy + Delta-G solvation = -2944.526348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.94161 -38.83248 -38.01302 -33.66162 -32.60517 -31.67775 -30.74876 -29.25637 -27.56271 -25.61938 -24.87587 -23.28206 -22.68902 -22.46406 -20.79318 -20.41744 -18.92940 -17.85267 -17.02223 -16.78375 -16.40915 -15.81539 -15.74569 -15.11134 -14.95365 -14.86501 -14.66372 -13.98559 -13.75273 -13.35332 -13.10964 -13.02781 -13.00959 -12.96252 -12.85962 -12.47755 -12.41126 -12.22630 -12.17756 -11.95278 -11.91878 -11.78335 -11.68163 -11.50039 -11.32025 -11.13937 -10.75410 -10.69994 -10.46265 -10.16894 -9.94328 -9.32112 -7.92985 -5.99327 1.40103 1.41607 1.51850 2.47253 3.06607 3.24323 3.61171 3.80594 3.93989 3.97635 4.04084 4.11012 4.35113 4.39740 4.40725 4.47092 4.51148 4.56574 4.61162 4.67717 4.73907 4.76775 4.78887 4.81876 4.87902 4.91401 4.94799 4.97889 5.07233 5.13699 5.18541 5.21609 5.26968 5.30326 5.34021 5.35686 5.40143 5.42206 5.50255 5.54731 5.65241 5.68645 5.74513 5.89322 6.02436 6.21404 6.49127 6.68754 7.05675 7.56560 9.01722 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017322 B = 0.006128 C = 0.005326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.073498 B = 4568.311382 C = 5256.138635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 C -0.052 4.052 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.120 4.120 10 C -0.002 4.002 11 N -0.458 5.458 12 C 0.086 3.914 13 C 0.019 3.981 14 C -0.453 4.453 15 H 0.064 0.936 16 C 0.002 3.998 17 N -0.910 5.910 18 Si 0.950 3.050 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.272 1.272 22 C -0.190 4.190 23 C -0.194 4.194 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.036 0.964 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.031 0.969 44 H 0.252 0.748 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 10.835 15.043 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.038 4.038 3 C -0.071 4.071 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.148 4.148 9 C -0.158 4.158 10 C -0.131 4.131 11 N -0.179 5.179 12 C -0.042 4.042 13 C 0.018 3.982 14 C -0.490 4.490 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.550 5.550 18 Si 0.777 3.223 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.196 1.196 22 C -0.228 4.228 23 C -0.233 4.233 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.477 10.900 14.515 18.960 hybrid contribution 0.297 -0.733 -0.897 1.196 sum -5.180 10.167 13.618 17.767 Atomic orbital electron populations 1.22055 0.93869 1.01939 1.03024 1.22811 0.94087 0.94428 0.92425 1.20871 0.99009 0.92050 0.95136 1.21556 1.00530 0.95084 0.97183 1.21520 1.00620 0.95754 0.97476 1.21505 1.00887 0.98473 0.94194 1.21528 0.99837 0.95458 0.98806 1.21492 1.00058 0.95673 0.97547 1.23175 1.01868 0.94805 0.95926 1.23686 1.00643 0.95474 0.93305 1.69016 1.39808 1.06491 1.02597 1.21883 0.92286 0.97940 0.92135 1.19169 0.93891 0.93054 0.92066 1.20862 0.94349 1.21863 1.11970 0.91753 1.25730 1.01706 0.95792 0.96301 1.70187 1.36344 1.29413 1.19070 0.85673 0.81460 0.78541 0.76582 1.20806 1.21496 1.19649 1.22688 1.01412 0.94538 1.04199 1.22697 0.96355 1.06184 0.98064 0.92894 0.89452 0.92683 0.92812 0.91174 0.91127 0.92676 0.90525 0.91461 0.91699 0.93180 0.92601 0.94504 0.92299 0.89517 0.88729 0.91775 0.92150 0.92447 0.95120 0.93893 0.90532 0.92573 0.92197 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 7.00 71.98 0.50 -3.10 16 2 C 0.05 1.47 0.43 0.80 0.00 1.47 16 3 C -0.05 -1.36 1.88 -10.79 -0.02 -1.38 16 4 C -0.11 -2.02 4.71 30.59 0.14 -1.88 16 5 C -0.12 -2.05 5.92 30.59 0.18 -1.86 16 6 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 7 C -0.12 -2.96 5.92 30.61 0.18 -2.77 16 8 C -0.11 -3.19 4.29 30.61 0.13 -3.06 16 9 C -0.12 -3.04 7.37 30.94 0.23 -2.81 16 10 C 0.00 -0.06 7.38 83.57 0.62 0.55 16 11 N -0.46 -17.14 4.69 -877.30 -4.11 -21.25 16 12 C 0.09 3.53 3.77 86.31 0.33 3.85 16 13 C 0.02 0.96 2.52 -52.93 -0.13 0.83 16 14 C -0.45 -25.42 8.70 25.60 0.22 -25.19 16 15 H 0.06 3.66 7.22 -2.91 -0.02 3.64 16 16 C 0.00 0.09 5.27 84.66 0.45 0.54 16 17 N -0.91 -53.42 8.59 21.45 0.18 -53.24 16 18 Si 0.95 45.83 29.54 68.60 2.03 47.86 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 22 C -0.19 -9.84 9.31 30.62 0.29 -9.56 16 23 C -0.19 -10.06 9.38 30.62 0.29 -9.77 16 24 H 0.05 1.29 6.28 -2.39 -0.01 1.28 16 25 H 0.09 1.61 6.62 -2.39 -0.02 1.60 16 26 H 0.05 1.42 5.96 -2.39 -0.01 1.40 16 27 H 0.05 1.63 8.09 -2.39 -0.02 1.61 16 28 H 0.07 1.24 6.60 -2.39 -0.02 1.22 16 29 H 0.07 1.21 7.99 -2.39 -0.02 1.19 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.38 7.27 -2.39 -0.02 1.36 16 37 H 0.06 1.61 6.88 -2.38 -0.02 1.59 16 38 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 39 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 40 H 0.06 2.01 6.58 -2.39 -0.02 1.99 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 2.34 6.11 -2.39 -0.01 2.33 16 43 H 0.03 1.19 6.01 -2.39 -0.01 1.17 16 44 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 45 H 0.08 4.46 6.30 -2.39 -0.02 4.44 16 46 H 0.06 2.61 8.05 -2.38 -0.02 2.59 16 47 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 48 H 0.08 4.64 6.27 -2.39 -0.01 4.62 16 Total: -1.00 -61.71 345.79 2.59 -59.12 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.91 Total: 23.62 kcal Atomic # 6 Polarization: -59.70 SS G_CDS: 3.58 Total: -56.12 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -3.93 Total: -74.48 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -61.71 2.59 -59.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560096346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.999 kcal (2) G-P(sol) polarization free energy of solvation -61.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds