Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 113.03714 * 2 1 4 4 C 1.53001 * 109.47056 * 42.64693 * 3 2 1 5 5 C 1.52999 * 109.46864 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47297 * 60.00306 * 5 4 3 7 7 C 1.53001 * 109.46914 * 299.99664 * 6 5 4 8 8 C 1.52999 * 109.46864 * 60.00071 * 7 6 5 9 9 C 1.53942 * 113.76041 * 228.27313 * 2 1 3 10 10 C 1.53934 * 86.45643 * 222.01936 * 9 2 1 11 11 N 1.47954 * 86.18458 * 23.66954 * 10 9 2 12 12 C 1.46894 * 111.00025 * 222.41438 * 11 10 9 13 13 C 1.52992 * 109.47388 * 277.53152 * 12 11 10 14 14 C 1.50700 * 115.55109 * 34.33202 * 13 12 11 15 15 H 1.07999 * 119.99867 * 359.81383 * 14 13 12 16 16 C 1.37877 * 120.00509 * 179.82212 * 14 13 12 17 17 N 1.31520 * 119.99511 * 2.49679 * 16 14 13 18 18 Si 1.86793 * 120.00101 * 182.49735 * 16 14 13 19 19 H 1.48498 * 109.47068 * 84.99481 * 18 16 14 20 20 H 1.48503 * 109.47023 * 204.99223 * 18 16 14 21 21 H 1.48496 * 109.47605 * 324.99439 * 18 16 14 22 22 C 1.53000 * 117.49837 * 248.62063 * 13 12 11 23 23 C 1.53002 * 60.00282 * 252.50778 * 22 13 12 24 24 H 1.09000 * 109.47159 * 182.05555 * 1 2 3 25 25 H 1.09001 * 109.47124 * 302.05745 * 1 2 3 26 26 H 1.09001 * 109.46554 * 62.05459 * 1 2 3 27 27 H 1.08999 * 109.47395 * 162.64860 * 3 2 1 28 28 H 1.08999 * 109.47155 * 300.00314 * 4 3 2 29 29 H 1.08997 * 109.46807 * 60.00454 * 4 3 2 30 30 H 1.08999 * 109.47294 * 299.99987 * 5 4 3 31 31 H 1.09008 * 109.47222 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.47214 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47208 * 59.99629 * 6 5 4 34 34 H 1.08999 * 109.47155 * 299.99998 * 7 6 5 35 35 H 1.08997 * 109.46807 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46883 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.47294 * 60.00013 * 8 7 6 38 38 H 1.08999 * 113.72541 * 107.60533 * 9 2 1 39 39 H 1.09002 * 113.73006 * 336.43239 * 9 2 1 40 40 H 1.09001 * 113.75421 * 137.98813 * 10 9 2 41 41 H 1.09001 * 113.75993 * 269.34401 * 10 9 2 42 42 H 1.09001 * 109.47399 * 37.53580 * 12 11 10 43 43 H 1.08999 * 109.47182 * 157.52620 * 12 11 10 44 44 H 0.97003 * 119.99405 * 180.02562 * 17 16 14 45 45 H 1.08997 * 117.50184 * 0.02562 * 22 13 12 46 46 H 1.09001 * 117.49582 * 145.02330 * 22 13 12 47 47 H 1.08998 * 117.50369 * 252.51190 * 23 22 13 48 48 H 1.08998 * 117.49407 * 107.48653 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1287 1.4079 0.0000 4 6 1.3519 2.2925 0.9773 5 6 1.9502 3.7006 0.9768 6 6 1.8586 4.2932 -0.4309 7 6 2.6354 3.4087 -1.4081 8 6 2.0371 2.0006 -1.4076 9 6 2.1503 -0.9378 -1.0515 10 6 3.1566 -1.3413 0.0412 11 7 2.1286 -0.9033 1.0110 12 6 2.7333 -0.1390 2.1100 13 6 3.2970 -1.1054 3.1536 14 6 3.8656 -2.3905 2.6093 15 1 3.8533 -2.5788 1.5459 16 6 4.4012 -3.3261 3.4689 17 7 4.3718 -3.1190 4.7673 18 14 5.1688 -4.8875 2.7892 19 1 6.5832 -4.6243 2.4215 20 1 5.1159 -5.9546 3.8206 21 1 4.4176 -5.3250 1.5853 22 6 2.5997 -1.1611 4.5143 23 6 3.9732 -0.4995 4.3852 24 1 -0.3633 -1.0270 0.0369 25 1 -0.3633 0.5455 0.8710 26 1 -0.3632 0.4816 -0.9079 27 1 3.1736 1.3585 0.3065 28 1 0.3070 2.3419 0.6708 29 1 1.4168 1.8700 1.9800 30 1 2.9952 3.6515 1.2830 31 1 1.3971 4.3307 1.6734 32 1 2.2845 5.2966 -0.4311 33 1 0.8137 4.3423 -0.7371 34 1 3.6804 3.3596 -1.1019 35 1 2.5698 3.8306 -2.4110 36 1 2.5908 1.3703 -2.1035 37 1 0.9921 2.0497 -1.7139 38 1 2.6032 -0.4141 -1.8934 39 1 1.4899 -1.7480 -1.3606 40 1 3.3638 -2.4109 0.0739 41 1 4.0599 -0.7314 0.0532 42 1 3.5380 0.4841 1.7196 43 1 1.9758 0.4938 2.5724 44 1 4.7490 -3.7770 5.3720 45 1 1.7391 -0.5097 4.6659 46 1 2.5519 -2.1276 5.0160 47 1 4.8289 -1.0307 4.8019 48 1 4.0164 0.5876 4.4519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560096347.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = 42.962486 kcal Electronic energy + Delta-G solvation = -23652.365228 eV Core-core repulsion = 20708.276069 eV Total energy + Delta-G solvation = -2944.089159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.98939 -38.67611 -37.88829 -33.68809 -32.70436 -31.96461 -30.72010 -29.32333 -27.76671 -25.11147 -24.70562 -23.39534 -22.99208 -22.62642 -20.84295 -20.67242 -18.73760 -17.99276 -17.19615 -16.61421 -16.21582 -16.01316 -15.57811 -15.19771 -14.89977 -14.86107 -14.53834 -14.21293 -13.99553 -13.40235 -13.14733 -13.05199 -13.01961 -12.94393 -12.75734 -12.56975 -12.34179 -12.20680 -12.08499 -11.94377 -11.86882 -11.84395 -11.60744 -11.30454 -11.18905 -11.13441 -10.95581 -10.60558 -10.55392 -10.13085 -9.95867 -9.20416 -7.93481 -6.01775 1.41229 1.42549 1.51290 2.46215 3.03091 3.21105 3.63934 3.71661 3.88882 3.95782 4.02713 4.15441 4.27404 4.34404 4.40929 4.44641 4.54171 4.60637 4.63396 4.68084 4.69237 4.74685 4.76817 4.81326 4.92077 4.96894 4.97943 5.03214 5.08386 5.09529 5.17397 5.24848 5.26209 5.29091 5.31860 5.34144 5.37122 5.40690 5.46279 5.57013 5.57347 5.67052 5.72258 5.92821 6.01641 6.21178 6.47072 6.62695 7.02147 7.54594 9.01340 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.005542 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.108735 B = 5051.176661 C = 5591.244448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.056 3.944 3 C -0.082 4.082 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.105 4.105 9 C -0.130 4.130 10 C 0.013 3.987 11 N -0.472 5.472 12 C 0.083 3.917 13 C 0.018 3.982 14 C -0.482 4.482 15 H 0.086 0.914 16 C 0.002 3.998 17 N -0.909 5.909 18 Si 0.951 3.049 19 H -0.278 1.278 20 H -0.292 1.292 21 H -0.267 1.267 22 C -0.190 4.190 23 C -0.194 4.194 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.029 0.971 43 H 0.061 0.939 44 H 0.251 0.749 45 H 0.053 0.947 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 12.655 -14.206 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.034 4.034 3 C -0.101 4.101 4 C -0.154 4.154 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.143 4.143 9 C -0.167 4.167 10 C -0.116 4.116 11 N -0.193 5.193 12 C -0.045 4.045 13 C 0.017 3.983 14 C -0.519 4.519 15 H 0.104 0.896 16 C -0.195 4.195 17 N -0.549 5.549 18 Si 0.778 3.222 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.192 1.192 22 C -0.228 4.228 23 C -0.232 4.232 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.500 12.064 -13.687 19.368 hybrid contribution 1.319 -0.574 0.594 1.556 sum -5.182 11.491 -13.092 18.174 Atomic orbital electron populations 1.21563 0.92471 1.01645 1.01932 1.22933 0.96481 0.91751 0.92258 1.21261 0.98769 0.92915 0.97178 1.21785 1.00115 0.95092 0.98448 1.21531 1.00348 0.95838 0.97964 1.21506 1.00954 0.98592 0.94044 1.21534 0.99084 0.95120 0.99820 1.21557 1.01945 0.96012 0.94786 1.23542 0.97700 0.99033 0.96470 1.23707 0.94433 1.00877 0.92559 1.68634 1.20393 1.26398 1.03912 1.22005 0.95867 0.93715 0.92892 1.19205 0.97919 0.95311 0.85866 1.21480 1.35121 1.00532 0.94782 0.89614 1.25796 0.97243 1.01212 0.95250 1.70217 1.46416 1.35632 1.02614 0.85670 0.78840 0.79682 0.78029 1.20381 1.21801 1.19196 1.22689 0.92728 1.00710 1.06632 1.22640 0.97177 0.94917 1.08480 0.93169 0.93041 0.90134 0.92869 0.90641 0.93568 0.93465 0.91668 0.91493 0.91251 0.93134 0.90604 0.91444 0.90785 0.89244 0.89362 0.91170 0.92568 0.95265 0.92120 0.93931 0.92846 0.90241 0.90518 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.96 8.50 71.98 0.61 -2.35 16 2 C 0.06 1.57 0.78 3.59 0.00 1.57 16 3 C -0.08 -2.03 1.16 -10.79 -0.01 -2.05 16 4 C -0.12 -2.84 4.19 30.59 0.13 -2.71 16 5 C -0.12 -2.50 5.92 30.60 0.18 -2.32 16 6 C -0.11 -1.90 5.92 30.60 0.18 -1.72 16 7 C -0.12 -2.02 5.92 30.59 0.18 -1.83 16 8 C -0.11 -1.98 4.87 30.60 0.15 -1.83 16 9 C -0.13 -3.48 7.21 31.24 0.23 -3.25 16 10 C 0.01 0.46 5.68 86.41 0.49 0.95 16 11 N -0.47 -17.98 5.68 -859.05 -4.88 -22.86 16 12 C 0.08 3.48 3.94 86.30 0.34 3.82 16 13 C 0.02 0.90 2.52 -52.93 -0.13 0.77 16 14 C -0.48 -26.42 8.50 25.60 0.22 -26.20 16 15 H 0.09 4.48 3.74 -2.91 -0.01 4.47 16 16 C 0.00 0.13 5.27 84.65 0.45 0.58 16 17 N -0.91 -53.35 8.60 21.45 0.18 -53.16 16 18 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 C -0.19 -10.07 9.31 30.60 0.28 -9.79 16 23 C -0.19 -10.11 9.38 30.60 0.29 -9.82 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.32 6.58 -2.39 -0.02 1.31 16 26 H 0.08 1.55 7.50 -2.39 -0.02 1.53 16 27 H 0.05 1.59 5.59 -2.39 -0.01 1.58 16 28 H 0.08 1.64 6.60 -2.39 -0.02 1.63 16 29 H 0.05 1.36 5.26 -2.39 -0.01 1.34 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.23 6.24 -2.39 -0.01 1.21 16 37 H 0.07 1.24 7.46 -2.39 -0.02 1.22 16 38 H 0.09 1.96 6.11 -2.39 -0.01 1.94 16 39 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 40 H 0.07 2.78 6.38 -2.39 -0.02 2.77 16 41 H 0.06 2.04 7.29 -2.39 -0.02 2.02 16 42 H 0.03 1.21 5.58 -2.39 -0.01 1.20 16 43 H 0.06 2.47 5.32 -2.39 -0.01 2.46 16 44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.05 2.59 8.05 -2.39 -0.02 2.57 16 46 H 0.08 4.73 6.20 -2.39 -0.01 4.71 16 47 H 0.08 4.46 6.37 -2.39 -0.02 4.44 16 48 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -61.26 336.04 1.84 -59.42 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.93 Total: 26.17 kcal Atomic # 6 Polarization: -59.76 SS G_CDS: 3.58 Total: -56.18 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -4.70 Total: -76.03 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -61.26 1.84 -59.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560096347.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.382 kcal (2) G-P(sol) polarization free energy of solvation -61.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds