Wall clock time and date at job start Mon Mar 30 2020 02:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47462 * 2 1 4 4 C 1.52999 * 109.47462 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47003 * 300.00035 * 4 3 2 6 6 N 1.46901 * 109.46971 * 179.97438 * 5 4 3 7 7 C 1.46904 * 110.99888 * 86.55958 * 6 5 4 8 8 C 1.52999 * 109.46601 * 289.95786 * 7 6 5 9 9 C 1.50698 * 115.55059 * 307.00243 * 8 7 6 10 10 H 1.08004 * 120.00223 * 87.97164 * 9 8 7 11 11 C 1.37883 * 120.00086 * 267.96739 * 9 8 7 12 12 N 1.31513 * 119.99811 * 174.86098 * 11 9 8 13 13 Si 1.86799 * 119.99778 * 354.86173 * 11 9 8 14 14 H 1.48507 * 109.47038 * 275.15248 * 13 11 9 15 15 H 1.48502 * 109.47357 * 35.15492 * 13 11 9 16 16 H 1.48499 * 109.46916 * 155.16029 * 13 11 9 17 17 C 1.53004 * 117.52075 * 92.70949 * 8 7 6 18 18 C 1.53001 * 59.99980 * 107.47740 * 17 8 7 19 19 C 1.46907 * 110.99876 * 210.50851 * 6 5 4 20 20 C 1.53000 * 117.49635 * 250.25052 * 19 6 5 21 21 C 1.52997 * 117.49783 * 181.58863 * 19 6 5 22 22 C 1.53007 * 109.47141 * 60.00258 * 5 4 3 23 23 C 1.52997 * 109.47028 * 120.00379 * 2 1 3 24 24 H 1.09004 * 109.46799 * 60.00068 * 1 2 3 25 25 H 1.08993 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47248 * 300.00357 * 1 2 3 27 27 H 1.09007 * 109.47004 * 240.00196 * 2 1 3 28 28 H 1.08997 * 109.46735 * 59.99897 * 3 2 1 29 29 H 1.09000 * 109.47435 * 300.00046 * 3 2 1 30 30 H 1.09004 * 109.47530 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.47248 * 59.99643 * 4 3 2 32 32 H 1.08997 * 109.47262 * 300.00145 * 5 4 3 33 33 H 1.08995 * 109.47253 * 169.95902 * 7 6 5 34 34 H 1.09004 * 109.47098 * 49.95225 * 7 6 5 35 35 H 0.97001 * 120.00016 * 180.02562 * 12 11 9 36 36 H 1.09000 * 117.49467 * 214.97018 * 17 8 7 37 37 H 1.08997 * 117.49496 * 359.97438 * 17 8 7 38 38 H 1.09003 * 117.49592 * 252.51033 * 18 17 8 39 39 H 1.08996 * 117.49762 * 107.49152 * 18 17 8 40 40 H 1.08998 * 115.54781 * 35.92216 * 19 6 5 41 41 H 1.08998 * 117.50432 * 359.97438 * 20 19 6 42 42 H 1.09000 * 117.49821 * 145.02423 * 20 19 6 43 43 H 1.08996 * 117.50013 * 214.97967 * 21 19 6 44 44 H 1.09004 * 117.49626 * 0.02562 * 21 19 6 45 45 H 1.08993 * 109.47387 * 59.99383 * 22 5 4 46 46 H 1.08991 * 109.47242 * 179.97438 * 22 5 4 47 47 H 1.09002 * 109.47300 * 299.99326 * 23 2 1 48 48 H 1.09001 * 109.47350 * 60.00026 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0806 0.7210 1.2483 6 7 5.5496 0.7205 1.2474 7 6 6.0768 1.9470 1.8603 8 6 5.7997 3.1370 0.9394 9 6 6.2705 2.9810 -0.4837 10 1 5.6254 2.5230 -1.2188 11 6 7.5249 3.4233 -0.8472 12 7 7.9754 3.1971 -2.0619 13 14 8.5843 4.3436 0.3856 14 1 8.2241 5.7843 0.3697 15 1 8.3554 3.7911 1.7449 16 1 10.0157 4.1873 0.0222 17 6 4.5113 3.9279 1.1745 18 6 5.8626 4.5363 1.5549 19 6 6.0760 -0.4735 1.9222 20 6 6.7582 -0.2759 3.2773 21 6 7.5957 -0.6065 2.0393 22 6 3.5706 -0.7216 1.2482 23 6 2.0400 -0.7213 1.2492 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.6767 1.9562 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9335 2.4701 -0.0002 31 1 3.9330 0.9287 -0.8908 32 1 3.7176 1.2346 2.1385 33 1 7.1518 1.8456 2.0094 34 1 5.5904 2.1108 2.8219 35 1 8.8579 3.5079 -2.3176 36 1 4.0042 4.3354 0.2999 37 1 3.8606 3.6003 1.9853 38 1 6.1009 4.6090 2.6161 39 1 6.2445 5.3440 0.9307 40 1 5.5005 -1.3877 1.7769 41 1 6.8168 0.7399 3.6680 42 1 6.6319 -1.0604 4.0235 43 1 8.0200 -1.6082 1.9715 44 1 8.2048 0.1922 1.6160 45 1 3.9334 -1.2352 0.3581 46 1 3.9346 -1.2357 2.1377 47 1 1.6767 -0.2075 2.1392 48 1 1.6766 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641536785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:41 Heat of formation + Delta-G solvation = 42.077381 kcal Electronic energy + Delta-G solvation = -23796.602919 eV Core-core repulsion = 20852.475378 eV Total energy + Delta-G solvation = -2944.127540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07884 -38.62383 -38.14176 -34.58721 -34.05108 -31.73657 -31.50832 -28.19127 -27.18240 -25.66208 -24.07016 -23.23600 -23.19052 -22.06337 -21.24182 -20.41954 -20.03298 -18.11285 -17.53150 -16.76953 -16.25934 -16.02993 -15.40009 -15.04777 -15.02066 -14.91253 -14.78921 -14.51921 -13.91709 -13.74744 -13.39228 -13.13687 -13.11156 -13.02924 -12.51859 -12.47031 -12.35909 -12.21180 -12.05951 -12.04486 -11.88316 -11.69999 -11.59269 -11.31980 -11.25466 -11.05070 -11.02006 -10.80769 -10.63089 -10.37873 -9.96103 -8.68678 -8.14781 -6.14235 1.34185 1.38407 1.48346 2.43315 2.80410 3.11818 3.19355 3.35573 3.86337 3.88979 4.04806 4.06771 4.14349 4.15697 4.23729 4.26934 4.36916 4.45064 4.49067 4.57500 4.61644 4.68740 4.73068 4.75310 4.79278 4.82095 4.84391 4.92606 4.96969 5.04552 5.06963 5.07540 5.11341 5.21900 5.25524 5.29501 5.32602 5.40529 5.46530 5.48309 5.53809 5.55672 5.70441 5.80486 5.92214 6.39647 6.55844 6.60240 6.92345 7.50187 9.01328 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.007069 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.040883 B = 3959.810636 C = 4751.985116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.106 4.106 4 C -0.126 4.126 5 C 0.106 3.894 6 N -0.504 5.504 7 C 0.107 3.893 8 C -0.008 4.008 9 C -0.437 4.437 10 H 0.044 0.956 11 C 0.014 3.986 12 N -0.955 5.955 13 Si 0.935 3.065 14 H -0.274 1.274 15 H -0.246 1.246 16 H -0.311 1.311 17 C -0.155 4.155 18 C -0.214 4.214 19 C 0.013 3.987 20 C -0.210 4.210 21 C -0.190 4.190 22 C -0.120 4.120 23 C -0.102 4.102 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.258 0.742 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.145 0.855 41 H 0.083 0.917 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -7.887 11.842 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.144 4.144 4 C -0.164 4.164 5 C -0.001 4.001 6 N -0.225 5.225 7 C -0.021 4.021 8 C -0.009 4.009 9 C -0.475 4.475 10 H 0.063 0.937 11 C -0.181 4.181 12 N -0.597 5.597 13 Si 0.763 3.237 14 H -0.200 1.200 15 H -0.169 1.169 16 H -0.239 1.239 17 C -0.192 4.192 18 C -0.251 4.251 19 C -0.096 4.096 20 C -0.249 4.249 21 C -0.228 4.228 22 C -0.158 4.158 23 C -0.140 4.140 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.162 0.838 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.507 -7.864 11.228 17.898 hybrid contribution 1.115 0.850 0.417 1.463 sum -10.392 -7.014 11.646 17.111 Atomic orbital electron populations 1.21781 0.94080 1.02071 1.01863 1.21148 0.96152 0.95560 0.98300 1.21549 0.94638 0.96817 1.01351 1.21996 0.94790 1.03081 0.96503 1.21497 0.85442 0.96368 0.96810 1.61542 1.07928 1.00237 1.52751 1.21675 0.98046 0.89469 0.92897 1.19378 0.98784 0.88369 0.94352 1.20340 0.99419 1.35528 0.92237 0.93737 1.25684 0.98894 0.97327 0.96223 1.70052 1.19043 1.49502 1.21069 0.86019 0.76546 0.79661 0.81489 1.20018 1.16945 1.23914 1.22836 0.90094 1.04605 1.01696 1.23140 1.03448 0.98416 1.00142 1.23122 0.94691 0.96149 0.95651 1.23558 1.06237 1.02915 0.92232 1.23057 0.94682 1.02630 1.02396 1.21905 0.96580 0.95371 1.01895 1.21536 0.93869 1.00873 0.97719 0.92993 0.91870 0.92200 0.92660 0.91682 0.92914 0.89407 0.95439 0.94366 0.93309 0.95279 0.93346 0.90179 0.88452 0.88717 0.90929 0.83771 0.89843 0.86645 0.86927 0.91767 0.92587 0.90394 0.91478 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.19 71.98 0.66 -1.90 16 2 C -0.09 -2.15 2.72 -10.80 -0.03 -2.18 16 3 C -0.11 -2.92 5.20 30.59 0.16 -2.76 16 4 C -0.13 -4.50 4.03 30.59 0.12 -4.38 16 5 C 0.11 3.40 1.92 44.92 0.09 3.49 16 6 N -0.50 -18.91 4.27 -845.87 -3.61 -22.52 16 7 C 0.11 4.26 3.45 86.30 0.30 4.56 16 8 C -0.01 -0.34 0.20 -52.93 -0.01 -0.35 16 9 C -0.44 -24.27 8.32 25.60 0.21 -24.06 16 10 H 0.04 2.78 6.93 -2.91 -0.02 2.76 16 11 C 0.01 0.82 5.47 84.66 0.46 1.28 16 12 N -0.95 -60.93 13.96 21.45 0.30 -60.63 16 13 Si 0.93 46.21 24.75 68.60 1.70 47.91 16 14 H -0.27 -13.04 6.82 99.48 0.68 -12.37 16 15 H -0.25 -11.22 6.40 99.48 0.64 -10.58 16 16 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 17 C -0.16 -5.86 7.06 30.60 0.22 -5.65 16 18 C -0.21 -8.67 7.25 30.60 0.22 -8.44 16 19 C 0.01 0.40 5.32 44.91 0.24 0.64 16 20 C -0.21 -5.71 9.60 30.62 0.29 -5.42 16 21 C -0.19 -6.00 9.90 30.62 0.30 -5.70 16 22 C -0.12 -3.05 3.92 30.62 0.12 -2.93 16 23 C -0.10 -2.12 5.21 30.61 0.16 -1.96 16 24 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 3.55 2.35 -2.38 -0.01 3.55 16 31 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 32 H 0.04 1.20 7.52 -2.39 -0.02 1.18 16 33 H 0.05 2.11 5.51 -2.39 -0.01 2.10 16 34 H 0.03 1.04 7.17 -2.39 -0.02 1.03 16 35 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 36 H 0.08 3.15 7.75 -2.39 -0.02 3.13 16 37 H 0.10 3.13 8.05 -2.39 -0.02 3.11 16 38 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.07 3.18 6.11 -2.39 -0.01 3.17 16 40 H 0.15 3.81 5.30 -2.39 -0.01 3.80 16 41 H 0.08 2.46 6.08 -2.39 -0.01 2.45 16 42 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.06 2.49 7.18 -2.39 -0.02 2.47 16 45 H 0.06 1.59 8.07 -2.39 -0.02 1.57 16 46 H 0.08 1.72 6.17 -2.39 -0.01 1.71 16 47 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -64.94 342.20 2.72 -62.23 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.81 Total: 28.77 kcal Atomic # 6 Polarization: -59.27 SS G_CDS: 3.52 Total: -55.75 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.31 Total: -83.15 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.70 Total: 47.91 kcal Total: -64.94 2.72 -62.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641536785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.303 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds