Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99453 * 3 2 1 5 5 H 1.48496 * 109.47224 * 29.99972 * 3 2 1 6 6 H 1.48503 * 109.46799 * 150.00057 * 3 2 1 7 7 C 1.37883 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99691 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00159 * 180.27870 * 7 2 1 10 10 N 1.46906 * 109.47438 * 179.72120 * 9 7 2 11 11 C 1.46901 * 110.99580 * 66.04199 * 10 9 7 12 12 C 1.52996 * 109.46683 * 195.87682 * 11 10 9 13 13 C 1.53005 * 117.50019 * 242.86203 * 12 11 10 14 14 C 1.53006 * 117.49632 * 174.20866 * 12 11 10 15 15 C 1.46893 * 110.99860 * 189.99785 * 10 9 7 16 16 C 1.52999 * 109.47295 * 75.46390 * 15 10 9 17 17 H 1.09009 * 109.46571 * 304.32439 * 16 15 10 18 18 C 1.52993 * 109.47545 * 64.32194 * 16 15 10 19 19 C 1.53001 * 109.47371 * 120.00128 * 18 16 15 20 20 C 1.53008 * 109.46872 * 60.00313 * 19 18 16 21 21 C 1.53003 * 109.46961 * 300.00073 * 20 19 18 22 22 C 1.53001 * 109.47259 * 184.32680 * 16 15 10 23 23 C 1.52993 * 109.46891 * 299.99359 * 22 16 15 24 24 C 1.52999 * 109.47614 * 300.00124 * 23 22 16 25 25 H 0.96996 * 119.99779 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47407 * 299.72491 * 9 7 2 27 27 H 1.09005 * 109.47338 * 59.72179 * 9 7 2 28 28 H 1.08998 * 109.47420 * 315.88251 * 11 10 9 29 29 H 1.09006 * 109.46779 * 75.88137 * 11 10 9 30 30 H 1.08996 * 115.55318 * 28.54090 * 12 11 10 31 31 H 1.08995 * 117.49717 * 0.02562 * 13 12 11 32 32 H 1.09007 * 117.49242 * 145.02328 * 13 12 11 33 33 H 1.09005 * 117.49495 * 214.98444 * 14 12 11 34 34 H 1.08997 * 117.49887 * 359.97438 * 14 12 11 35 35 H 1.09009 * 109.46716 * 195.45678 * 15 10 9 36 36 H 1.08996 * 109.47659 * 315.45466 * 15 10 9 37 37 H 1.09000 * 109.47290 * 240.00647 * 18 16 15 38 38 H 1.09002 * 109.47287 * 0.02562 * 18 16 15 39 39 H 1.08994 * 109.47613 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.46995 * 59.99967 * 20 19 18 41 41 H 1.09000 * 109.47140 * 180.02562 * 20 19 18 42 42 H 1.08998 * 109.46990 * 239.99888 * 21 20 19 43 43 H 1.08995 * 109.46995 * 119.99751 * 21 20 19 44 44 H 1.09003 * 109.47467 * 59.99673 * 22 16 15 45 45 H 1.09003 * 109.47310 * 179.97438 * 23 22 16 46 46 H 1.09007 * 109.47310 * 60.00412 * 23 22 16 47 47 H 1.08998 * 109.47289 * 240.00497 * 24 23 22 48 48 H 1.08996 * 109.47177 * 119.99690 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0058 10 7 4.0011 -2.5792 0.0106 11 6 3.6568 -3.2636 -1.2428 12 6 3.8168 -4.7741 -1.0596 13 6 4.8645 -5.4831 -1.9203 14 6 3.3746 -5.6764 -2.2134 15 6 5.4489 -2.6248 0.2549 16 6 5.7249 -2.3574 1.7358 17 1 5.2748 -1.4072 2.0235 18 6 5.1220 -3.4831 2.5785 19 6 6.2307 -4.1741 3.3748 20 6 6.9087 -3.1561 4.2941 21 6 7.5117 -2.0303 3.4514 22 6 7.2357 -2.2979 1.9704 23 6 7.8673 -3.6315 1.5667 24 6 7.2644 -4.7573 2.4093 25 1 -0.4849 0.8400 -0.0004 26 1 3.8786 -0.6821 -0.8836 27 1 3.8711 -0.6786 0.8963 28 1 2.6243 -3.0371 -1.5087 29 1 4.3200 -2.9217 -2.0375 30 1 3.6651 -5.1433 -0.0454 31 1 5.4400 -4.8733 -2.6167 32 1 5.4018 -6.3190 -1.4722 33 1 2.9323 -6.6394 -1.9582 34 1 2.9694 -5.1939 -3.1028 35 1 5.8319 -3.6093 -0.0140 36 1 5.9436 -1.8649 -0.3499 37 1 4.3855 -3.0676 3.2663 38 1 4.6392 -4.2085 1.9236 39 1 5.8011 -4.9758 3.9755 40 1 6.1722 -2.7406 4.9818 41 1 7.6989 -3.6483 4.8611 42 1 8.5880 -1.9879 3.6186 43 1 7.0616 -1.0802 3.7390 44 1 7.6653 -1.4958 1.3701 45 1 8.9437 -3.5890 1.7334 46 1 7.6708 -3.8222 0.5116 47 1 8.0543 -5.2496 2.9767 48 1 6.7814 -5.4825 1.7545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641934920.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = 1.375588 kcal Electronic energy + Delta-G solvation = -23252.438116 eV Core-core repulsion = 20306.545613 eV Total energy + Delta-G solvation = -2945.892503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40689 -37.74758 -35.55428 -32.57327 -31.47345 -30.87369 -30.67612 -28.02453 -26.27247 -23.68787 -22.44181 -22.17621 -21.90153 -21.23690 -20.25667 -19.41230 -16.93763 -16.29366 -16.25178 -15.74074 -15.26704 -15.06702 -14.68543 -13.99228 -13.71634 -13.41362 -13.03071 -12.53357 -12.41999 -12.02037 -11.98136 -11.95931 -11.86303 -11.77934 -11.74818 -11.50239 -11.38498 -11.21779 -11.00251 -10.70221 -10.66594 -10.35841 -10.23167 -9.80422 -9.78144 -9.60191 -9.57115 -9.49296 -9.35379 -9.11080 -8.54494 -7.30751 -6.02777 -3.99109 3.28937 3.36889 3.39220 4.14056 4.43969 4.58787 4.74644 4.80083 4.87091 5.16279 5.27546 5.29956 5.37230 5.40647 5.45726 5.49541 5.53703 5.54041 5.56220 5.65634 5.72272 5.79925 5.82138 5.84010 5.89457 6.04572 6.10156 6.14761 6.16923 6.20117 6.24294 6.32281 6.34900 6.35854 6.43600 6.48733 6.51087 6.60142 6.73009 6.80551 6.88044 6.88776 6.96839 7.03979 7.67204 7.99790 8.14571 8.70478 9.07133 9.59796 11.10409 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.013142 B = 0.006765 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.129382 B = 4137.909031 C = 5603.980420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.521 5.521 11 C 0.091 3.909 12 C -0.130 4.130 13 C -0.192 4.192 14 C -0.183 4.183 15 C 0.059 3.941 16 C -0.074 4.074 17 H 0.070 0.930 18 C -0.094 4.094 19 C -0.089 4.089 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.082 4.082 23 C -0.112 4.112 24 C -0.109 4.109 25 H 0.263 0.737 26 H -0.020 1.020 27 H 0.030 0.970 28 H 0.094 0.906 29 H 0.018 0.982 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.017 0.983 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.479 -8.953 3.085 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.544 4.544 8 H 0.099 0.901 9 C 0.035 3.965 10 N -0.244 5.244 11 C -0.037 4.037 12 C -0.148 4.148 13 C -0.229 4.229 14 C -0.220 4.220 15 C -0.069 4.069 16 C -0.093 4.093 17 H 0.088 0.912 18 C -0.131 4.131 19 C -0.107 4.107 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.101 4.101 23 C -0.149 4.149 24 C -0.146 4.146 25 H 0.072 0.928 26 H -0.003 1.003 27 H 0.048 0.952 28 H 0.112 0.888 29 H 0.037 0.963 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.080 -9.063 3.471 17.933 hybrid contribution 0.792 1.456 -0.703 1.800 sum 15.872 -7.607 2.768 17.817 Atomic orbital electron populations 1.69895 1.06085 1.26708 1.51326 1.24892 0.94688 0.98729 0.94996 0.86909 0.80427 0.84287 0.78407 1.20472 1.21223 1.19185 1.21063 0.88832 0.94637 1.49878 0.90053 1.20191 0.96893 0.84469 0.94898 1.61834 1.10867 1.18369 1.33345 1.21602 1.02130 0.89831 0.90180 1.22414 1.01802 0.94549 0.96067 1.23026 0.92021 1.03447 1.04419 1.22906 0.96958 1.01302 1.00855 1.22220 0.89835 0.99802 0.95057 1.21082 0.93268 0.99641 0.95298 0.91153 1.21422 0.96027 0.97615 0.98047 1.21099 0.96140 0.97212 0.96287 1.21524 0.99407 0.96489 0.97492 1.21505 0.99812 0.98525 0.95028 1.21046 0.96182 0.97018 0.95856 1.21535 0.98746 0.94899 0.99744 1.21479 0.97916 0.97421 0.97797 0.92759 1.00264 0.95185 0.88797 0.96345 0.87369 0.89518 0.89583 0.89282 0.89070 0.91286 0.96442 0.92285 0.90846 0.91851 0.92196 0.92772 0.92620 0.92185 0.91848 0.92828 0.91907 0.92866 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.51 -14.21 8.84 -34.44 -0.30 -14.51 16 8 H 0.08 2.49 7.50 -52.49 -0.39 2.10 16 9 C 0.16 3.88 3.62 -4.98 -0.02 3.87 16 10 N -0.52 -10.52 3.92 -236.07 -0.92 -11.45 16 11 C 0.09 1.72 5.08 -3.83 -0.02 1.70 16 12 C -0.13 -2.03 4.96 -90.62 -0.45 -2.48 16 13 C -0.19 -2.51 10.05 -26.69 -0.27 -2.78 16 14 C -0.18 -2.50 10.25 -26.69 -0.27 -2.77 16 15 C 0.06 1.00 3.48 -3.83 -0.01 0.99 16 16 C -0.07 -1.16 2.27 -90.62 -0.21 -1.37 16 17 H 0.07 1.28 6.66 -51.92 -0.35 0.93 16 18 C -0.09 -1.41 5.15 -26.73 -0.14 -1.54 16 19 C -0.09 -1.09 3.20 -90.61 -0.29 -1.38 16 20 C -0.11 -1.28 5.71 -26.73 -0.15 -1.44 16 21 C -0.11 -1.32 5.71 -26.73 -0.15 -1.47 16 22 C -0.08 -1.06 2.72 -90.62 -0.25 -1.31 16 23 C -0.11 -1.29 5.36 -26.74 -0.14 -1.43 16 24 C -0.11 -1.22 5.71 -26.73 -0.15 -1.37 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H -0.02 -0.50 7.55 -51.93 -0.39 -0.89 16 27 H 0.03 0.74 5.61 -51.93 -0.29 0.45 16 28 H 0.09 2.05 6.59 -51.93 -0.34 1.71 16 29 H 0.02 0.34 7.78 -51.93 -0.40 -0.06 16 30 H 0.11 1.77 8.09 -51.93 -0.42 1.35 16 31 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 32 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.07 5.54 -51.92 -0.29 0.78 16 36 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.18 7.35 -51.93 -0.38 0.80 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.74 6.53 -51.93 -0.34 0.41 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -28.85 353.07 -11.52 -40.37 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -9.09 Total: 1.01 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -2.92 Total: -25.43 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.15 Total: -38.24 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.85 -11.52 -40.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641934920.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.747 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds