Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48502 * 109.46948 * 239.99708 * 3 2 1 5 5 H 1.48501 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47149 * 119.99815 * 3 2 1 7 7 C 1.37873 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00303 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00087 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47440 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99844 * 66.04401 * 10 9 7 12 12 C 1.53008 * 109.47073 * 200.69162 * 11 10 9 13 13 C 1.53003 * 117.49677 * 242.78388 * 12 11 10 14 14 C 1.53004 * 117.49685 * 174.12600 * 12 11 10 15 15 C 1.46895 * 111.00215 * 189.99990 * 10 9 7 16 16 C 1.53004 * 109.47279 * 160.30059 * 15 10 9 17 17 H 1.09003 * 109.47128 * 59.53033 * 16 15 10 18 18 C 1.52998 * 109.47005 * 299.53242 * 16 15 10 19 19 C 1.53002 * 109.46690 * 240.00014 * 18 16 15 20 20 C 1.52996 * 109.47483 * 59.99861 * 19 18 16 21 21 C 1.52999 * 109.47326 * 300.00176 * 20 19 18 22 22 C 1.52996 * 109.47170 * 179.52891 * 16 15 10 23 23 C 1.53004 * 109.47170 * 179.97438 * 22 16 15 24 24 C 1.52998 * 109.47005 * 300.00351 * 23 22 16 25 25 H 0.96999 * 119.99791 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47298 * 60.00086 * 9 7 2 27 27 H 1.09000 * 109.47109 * 299.99704 * 9 7 2 28 28 H 1.09001 * 109.47263 * 320.69219 * 11 10 9 29 29 H 1.09001 * 109.47561 * 80.69341 * 11 10 9 30 30 H 1.08993 * 115.54890 * 28.45311 * 12 11 10 31 31 H 1.08995 * 117.50086 * 359.97438 * 13 12 11 32 32 H 1.08997 * 117.49501 * 145.02138 * 13 12 11 33 33 H 1.09001 * 117.49264 * 214.97756 * 14 12 11 34 34 H 1.09001 * 117.50091 * 359.97438 * 14 12 11 35 35 H 1.08995 * 109.47226 * 40.30159 * 15 10 9 36 36 H 1.09008 * 109.47153 * 280.30330 * 15 10 9 37 37 H 1.08996 * 109.47192 * 359.97438 * 18 16 15 38 38 H 1.08994 * 109.47396 * 120.00040 * 18 16 15 39 39 H 1.09007 * 109.46941 * 180.02562 * 19 18 16 40 40 H 1.09010 * 109.47018 * 60.00028 * 20 19 18 41 41 H 1.08999 * 109.47166 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.46797 * 240.00010 * 21 20 19 43 43 H 1.08995 * 109.47288 * 119.99596 * 21 20 19 44 44 H 1.09006 * 109.47603 * 300.00039 * 22 16 15 45 45 H 1.09003 * 109.47078 * 180.02562 * 23 22 16 46 46 H 1.09003 * 109.47128 * 60.00141 * 23 22 16 47 47 H 1.09008 * 109.46791 * 240.00402 * 24 23 22 48 48 H 1.08994 * 109.47396 * 120.00040 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 2.9698 -3.6535 1.2557 12 6 4.2592 -4.4495 1.0432 13 6 4.4391 -5.7330 1.8564 14 6 5.2633 -4.4888 2.1971 15 6 1.5212 -4.8936 -0.2363 16 6 2.5363 -5.9349 -0.7121 17 1 3.3076 -6.0638 0.0473 18 6 3.1795 -5.4610 -2.0169 19 6 2.8975 -6.4792 -3.1236 20 6 1.3862 -6.6141 -3.3196 21 6 0.7430 -7.0879 -2.0147 22 6 1.8256 -7.2689 -0.9488 23 6 2.8406 -8.3100 -1.4252 24 6 3.4833 -7.8358 -2.7302 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.2167 -2.6368 1.5615 29 1 2.3717 -4.1312 2.0317 30 1 4.6582 -4.4361 0.0291 31 1 3.6392 -6.0101 2.5430 32 1 4.9568 -6.5638 1.3772 33 1 6.3229 -4.5018 1.9418 34 1 5.0056 -3.9473 3.1073 35 1 0.7546 -4.7586 -0.9992 36 1 1.0569 -5.2351 0.6889 37 1 2.7615 -4.4944 -2.2979 38 1 4.2562 -5.3649 -1.8774 39 1 3.3561 -6.1418 -4.0532 40 1 0.9684 -5.6472 -3.6004 41 1 1.1854 -7.3392 -4.1083 42 1 0.2367 -8.0383 -2.1834 43 1 0.0198 -6.3461 -1.6758 44 1 1.3674 -7.6066 -0.0192 45 1 2.3342 -9.2603 -1.5943 46 1 3.6122 -8.4391 -0.6662 47 1 3.2821 -8.5610 -3.5187 48 1 4.5600 -7.7397 -2.5910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641934931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = 2.889715 kcal Electronic energy + Delta-G solvation = -23380.598834 eV Core-core repulsion = 20434.771989 eV Total energy + Delta-G solvation = -2945.826845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42879 -37.73786 -35.34907 -32.68561 -31.39654 -30.80733 -30.60408 -27.26568 -26.32981 -23.87696 -22.48048 -22.14324 -21.89265 -21.13359 -20.19498 -19.61755 -16.47658 -16.23596 -16.15866 -15.62661 -15.18016 -15.04320 -14.66083 -14.06420 -13.79586 -13.36215 -13.00389 -12.36303 -12.08244 -11.94035 -11.90629 -11.76689 -11.74299 -11.71979 -11.61647 -11.45459 -11.22654 -11.11302 -10.86845 -10.73260 -10.50864 -10.47999 -10.20139 -10.03907 -9.76805 -9.61874 -9.53334 -9.42732 -9.09564 -8.98030 -8.40769 -7.16341 -5.99837 -4.00812 3.35118 3.39131 3.42242 4.16953 4.44400 4.70941 4.81151 4.84471 4.94041 5.21422 5.29402 5.35835 5.41570 5.45339 5.50769 5.56515 5.58381 5.59667 5.62474 5.71847 5.80954 5.85110 5.85314 5.90557 5.96614 6.09403 6.15738 6.18808 6.21305 6.30958 6.36295 6.37303 6.38192 6.42183 6.51037 6.58371 6.59325 6.62042 6.80623 6.87689 6.91899 7.02615 7.35758 7.41420 7.85633 8.15623 8.29115 8.62021 9.07521 9.63352 11.10894 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.005537 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.250940 B = 5055.254694 C = 5935.719033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.195 3.805 10 N -0.530 5.530 11 C 0.091 3.909 12 C -0.125 4.125 13 C -0.191 4.191 14 C -0.188 4.188 15 C 0.063 3.937 16 C -0.088 4.088 17 H 0.088 0.912 18 C -0.095 4.095 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.081 4.081 23 C -0.109 4.109 24 C -0.111 4.111 25 H 0.261 0.739 26 H 0.029 0.971 27 H -0.013 1.013 28 H 0.088 0.912 29 H 0.019 0.981 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.016 0.984 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -15.731 -1.930 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.070 3.930 10 N -0.254 5.254 11 C -0.038 4.038 12 C -0.144 4.144 13 C -0.228 4.228 14 C -0.226 4.226 15 C -0.066 4.066 16 C -0.106 4.106 17 H 0.106 0.894 18 C -0.133 4.133 19 C -0.107 4.107 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.100 4.100 23 C -0.147 4.147 24 C -0.148 4.148 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.005 0.995 28 H 0.106 0.894 29 H 0.037 0.963 30 H 0.129 0.871 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.173 -15.508 -2.321 16.852 hybrid contribution -0.223 0.751 0.684 1.039 sum 5.951 -14.758 -1.637 15.996 Atomic orbital electron populations 1.69950 1.06054 1.26787 1.51119 1.24978 0.94818 0.99227 0.95543 0.86594 0.79453 0.82917 0.78637 1.20194 1.21442 1.20323 1.21146 0.93484 0.89958 1.49835 0.91858 1.19704 0.90055 0.87392 0.95886 1.61939 1.27798 1.02684 1.32960 1.21618 0.91611 0.99964 0.90582 1.22542 0.97763 0.97809 0.96256 1.23022 1.03235 0.92027 1.04508 1.22993 0.96966 1.01842 1.00754 1.22202 0.95314 0.90557 0.98533 1.21433 0.98291 0.92639 0.98274 0.89422 1.21454 0.99670 0.98666 0.93471 1.21072 0.95459 0.95436 0.98743 1.21487 0.95418 1.00952 0.96933 1.21558 0.97675 1.00518 0.95421 1.21036 0.95625 0.95715 0.97637 1.21489 0.98225 0.97740 0.97203 1.21504 0.99419 0.96822 0.97075 0.92948 0.95276 0.99482 0.89412 0.96274 0.87140 0.89464 0.89558 0.89439 0.89218 0.91658 0.96552 0.90235 0.93064 0.91953 0.91915 0.92926 0.92930 0.91688 0.92022 0.92742 0.92458 0.92837 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.03 8.22 -34.44 -0.28 -14.32 16 8 H 0.06 1.74 7.33 -52.49 -0.38 1.36 16 9 C 0.19 5.01 4.70 -4.98 -0.02 4.99 16 10 N -0.53 -11.06 3.77 -236.07 -0.89 -11.94 16 11 C 0.09 1.75 5.10 -3.82 -0.02 1.73 16 12 C -0.13 -1.97 3.86 -90.61 -0.35 -2.32 16 13 C -0.19 -2.53 8.34 -26.69 -0.22 -2.75 16 14 C -0.19 -2.57 10.25 -26.69 -0.27 -2.84 16 15 C 0.06 1.12 3.85 -3.82 -0.01 1.10 16 16 C -0.09 -1.28 1.76 -90.62 -0.16 -1.44 16 17 H 0.09 1.27 3.66 -51.93 -0.19 1.08 16 18 C -0.10 -1.41 4.72 -26.73 -0.13 -1.54 16 19 C -0.09 -1.12 3.19 -90.66 -0.29 -1.41 16 20 C -0.11 -1.39 5.71 -26.73 -0.15 -1.54 16 21 C -0.11 -1.44 5.36 -26.73 -0.14 -1.59 16 22 C -0.08 -1.03 2.72 -90.62 -0.25 -1.28 16 23 C -0.11 -1.22 5.71 -26.73 -0.15 -1.37 16 24 C -0.11 -1.23 5.70 -26.78 -0.15 -1.39 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.81 7.83 -51.93 -0.41 0.40 16 27 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 28 H 0.09 1.90 6.58 -51.93 -0.34 1.56 16 29 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 30 H 0.11 1.82 6.73 -51.93 -0.35 1.47 16 31 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 32 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.22 6.05 -51.93 -0.31 0.91 16 36 H 0.02 0.30 7.72 -51.92 -0.40 -0.10 16 37 H 0.08 1.41 7.27 -51.93 -0.38 1.03 16 38 H 0.05 0.75 7.40 -51.93 -0.38 0.37 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.89 6.44 -51.93 -0.33 0.56 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.55 8.14 -51.92 -0.42 0.12 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -28.10 349.14 -11.53 -39.63 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -8.92 Total: 0.88 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -2.71 Total: -24.49 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.15 Total: -37.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.10 -11.53 -39.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641934931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.523 kcal (2) G-P(sol) polarization free energy of solvation -28.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds