Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48502 * 109.46948 * 239.99708 * 3 2 1 5 5 H 1.48501 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47149 * 119.99815 * 3 2 1 7 7 C 1.37873 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00303 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00087 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47440 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99844 * 66.04401 * 10 9 7 12 12 C 1.53008 * 109.47073 * 200.69162 * 11 10 9 13 13 C 1.53003 * 117.49677 * 242.78388 * 12 11 10 14 14 C 1.53004 * 117.49685 * 174.12600 * 12 11 10 15 15 C 1.46895 * 111.00215 * 189.99990 * 10 9 7 16 16 C 1.53004 * 109.47279 * 160.30059 * 15 10 9 17 17 H 1.09003 * 109.47128 * 59.53033 * 16 15 10 18 18 C 1.52998 * 109.47005 * 299.53242 * 16 15 10 19 19 C 1.53002 * 109.46690 * 240.00014 * 18 16 15 20 20 C 1.52996 * 109.47483 * 59.99861 * 19 18 16 21 21 C 1.52999 * 109.47326 * 300.00176 * 20 19 18 22 22 C 1.52996 * 109.47170 * 179.52891 * 16 15 10 23 23 C 1.53004 * 109.47170 * 179.97438 * 22 16 15 24 24 C 1.52998 * 109.47005 * 300.00351 * 23 22 16 25 25 H 0.96999 * 119.99791 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47298 * 60.00086 * 9 7 2 27 27 H 1.09000 * 109.47109 * 299.99704 * 9 7 2 28 28 H 1.09001 * 109.47263 * 320.69219 * 11 10 9 29 29 H 1.09001 * 109.47561 * 80.69341 * 11 10 9 30 30 H 1.08993 * 115.54890 * 28.45311 * 12 11 10 31 31 H 1.08995 * 117.50086 * 359.97438 * 13 12 11 32 32 H 1.08997 * 117.49501 * 145.02138 * 13 12 11 33 33 H 1.09001 * 117.49264 * 214.97756 * 14 12 11 34 34 H 1.09001 * 117.50091 * 359.97438 * 14 12 11 35 35 H 1.08995 * 109.47226 * 40.30159 * 15 10 9 36 36 H 1.09008 * 109.47153 * 280.30330 * 15 10 9 37 37 H 1.08996 * 109.47192 * 359.97438 * 18 16 15 38 38 H 1.08994 * 109.47396 * 120.00040 * 18 16 15 39 39 H 1.09007 * 109.46941 * 180.02562 * 19 18 16 40 40 H 1.09010 * 109.47018 * 60.00028 * 20 19 18 41 41 H 1.08999 * 109.47166 * 179.97438 * 20 19 18 42 42 H 1.08996 * 109.46797 * 240.00010 * 21 20 19 43 43 H 1.08995 * 109.47288 * 119.99596 * 21 20 19 44 44 H 1.09006 * 109.47603 * 300.00039 * 22 16 15 45 45 H 1.09003 * 109.47078 * 180.02562 * 23 22 16 46 46 H 1.09003 * 109.47128 * 60.00141 * 23 22 16 47 47 H 1.09008 * 109.46791 * 240.00402 * 24 23 22 48 48 H 1.08994 * 109.47396 * 120.00040 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0018 11 6 2.9698 -3.6535 1.2557 12 6 4.2592 -4.4495 1.0432 13 6 4.4391 -5.7330 1.8564 14 6 5.2633 -4.4888 2.1971 15 6 1.5212 -4.8936 -0.2363 16 6 2.5363 -5.9349 -0.7121 17 1 3.3076 -6.0638 0.0473 18 6 3.1795 -5.4610 -2.0169 19 6 2.8975 -6.4792 -3.1236 20 6 1.3862 -6.6141 -3.3196 21 6 0.7430 -7.0879 -2.0147 22 6 1.8256 -7.2689 -0.9488 23 6 2.8406 -8.3100 -1.4252 24 6 3.4833 -7.8358 -2.7302 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 3.2167 -2.6368 1.5615 29 1 2.3717 -4.1312 2.0317 30 1 4.6582 -4.4361 0.0291 31 1 3.6392 -6.0101 2.5430 32 1 4.9568 -6.5638 1.3772 33 1 6.3229 -4.5018 1.9418 34 1 5.0056 -3.9473 3.1073 35 1 0.7546 -4.7586 -0.9992 36 1 1.0569 -5.2351 0.6889 37 1 2.7615 -4.4944 -2.2979 38 1 4.2562 -5.3649 -1.8774 39 1 3.3561 -6.1418 -4.0532 40 1 0.9684 -5.6472 -3.6004 41 1 1.1854 -7.3392 -4.1083 42 1 0.2367 -8.0383 -2.1834 43 1 0.0198 -6.3461 -1.6758 44 1 1.3674 -7.6066 -0.0192 45 1 2.3342 -9.2603 -1.5943 46 1 3.6122 -8.4391 -0.6662 47 1 3.2821 -8.5610 -3.5187 48 1 4.5600 -7.7397 -2.5910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641934931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -10.407557 kcal Electronic energy + Delta-G solvation = -23381.175447 eV Core-core repulsion = 20434.771989 eV Total energy + Delta-G solvation = -2946.403458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55569 -39.10490 -36.86680 -34.72035 -32.67926 -31.94006 -31.63495 -29.21194 -27.83842 -25.59283 -23.49470 -23.24044 -23.12433 -22.65209 -21.47358 -21.05512 -18.51220 -17.46099 -17.26998 -16.86376 -16.55070 -16.38638 -16.26646 -15.44069 -15.33963 -14.87762 -14.43589 -13.95091 -13.64341 -13.42332 -13.15148 -12.97569 -12.85367 -12.82614 -12.78130 -12.74524 -12.72115 -12.44452 -12.41732 -12.26341 -12.12148 -11.98705 -11.76875 -11.43602 -11.18699 -11.03706 -10.75876 -10.62239 -10.57402 -10.49157 -10.20285 -8.95933 -8.20272 -6.30273 1.39552 1.42980 1.50821 2.39673 2.98432 3.11445 3.27742 3.73408 3.80788 3.86608 4.03864 4.13892 4.19845 4.27460 4.45046 4.47747 4.52159 4.57140 4.58018 4.59326 4.62171 4.65411 4.77973 4.82366 4.83336 4.86403 4.87751 4.92808 5.00381 5.08566 5.16692 5.19887 5.22243 5.27046 5.32389 5.34969 5.38985 5.48199 5.49725 5.54485 5.59729 5.64657 5.71007 5.72505 5.78730 6.07410 6.41667 6.71023 6.86947 7.39394 8.90645 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017659 B = 0.005537 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.250940 B = 5055.254694 C = 5935.719033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.211 3.789 10 N -0.530 5.530 11 C 0.096 3.904 12 C -0.145 4.145 13 C -0.168 4.168 14 C -0.177 4.177 15 C 0.066 3.934 16 C -0.077 4.077 17 H 0.096 0.904 18 C -0.091 4.091 19 C -0.087 4.087 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.080 4.080 23 C -0.105 4.105 24 C -0.106 4.106 25 H 0.264 0.736 26 H -0.002 1.002 27 H -0.046 1.046 28 H 0.057 0.943 29 H 0.016 0.984 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.011 0.989 37 H 0.040 0.960 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 -17.774 -1.943 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.085 3.915 10 N -0.253 5.253 11 C -0.032 4.032 12 C -0.163 4.163 13 C -0.205 4.205 14 C -0.215 4.215 15 C -0.062 4.062 16 C -0.095 4.095 17 H 0.114 0.886 18 C -0.129 4.129 19 C -0.106 4.106 20 C -0.148 4.148 21 C -0.153 4.153 22 C -0.099 4.099 23 C -0.142 4.142 24 C -0.144 4.144 25 H 0.072 0.928 26 H 0.017 0.983 27 H -0.028 1.028 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.030 0.970 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.519 -17.575 -2.331 19.669 hybrid contribution -1.010 1.390 0.701 1.856 sum 7.508 -16.185 -1.630 17.916 Atomic orbital electron populations 1.70089 1.07776 1.27880 1.51913 1.25912 0.95702 1.03170 0.94864 0.85457 0.78174 0.77993 0.79133 1.19349 1.20845 1.19188 1.21416 0.93543 0.90987 1.49792 0.91909 1.19334 0.90110 0.89301 0.92791 1.61937 1.26646 1.02648 1.34095 1.21537 0.93166 0.99040 0.89488 1.22230 0.96753 1.00307 0.97059 1.23085 1.02824 0.91706 1.02889 1.23094 0.97572 1.01645 0.99177 1.22251 0.96048 0.90120 0.97787 1.21353 0.97437 0.92532 0.98201 0.88648 1.21365 0.99465 0.97615 0.94468 1.21059 0.95523 0.96061 0.97932 1.21489 0.95447 1.00335 0.97551 1.21562 0.97448 1.00823 0.95422 1.21043 0.96039 0.94915 0.97922 1.21479 0.97890 0.97517 0.97320 1.21486 0.99687 0.95600 0.97609 0.92752 0.98342 1.02809 0.92468 0.96634 0.87686 0.89371 0.87113 0.87389 0.89410 0.93428 0.97047 0.94162 0.92699 0.91638 0.94247 0.90895 0.90898 0.93970 0.91696 0.90996 0.91476 0.91165 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.52 -30.14 8.22 25.60 0.21 -29.93 16 8 H 0.06 3.58 7.33 -2.91 -0.02 3.56 16 9 C 0.21 11.69 4.70 85.56 0.40 12.09 16 10 N -0.53 -23.45 3.77 -900.77 -3.39 -26.84 16 11 C 0.10 3.83 5.10 86.31 0.44 4.27 16 12 C -0.14 -4.44 3.86 -10.79 -0.04 -4.48 16 13 C -0.17 -3.97 8.34 30.62 0.26 -3.71 16 14 C -0.18 -4.43 10.25 30.62 0.31 -4.11 16 15 C 0.07 2.49 3.85 86.31 0.33 2.83 16 16 C -0.08 -2.22 1.76 -10.79 -0.02 -2.23 16 17 H 0.10 2.62 3.66 -2.39 -0.01 2.61 16 18 C -0.09 -2.71 4.72 30.59 0.14 -2.57 16 19 C -0.09 -2.09 3.19 -10.82 -0.03 -2.13 16 20 C -0.11 -2.71 5.71 30.59 0.17 -2.54 16 21 C -0.12 -2.82 5.36 30.60 0.16 -2.65 16 22 C -0.08 -1.90 2.72 -10.79 -0.03 -1.93 16 23 C -0.10 -1.94 5.71 30.59 0.17 -1.76 16 24 C -0.11 -1.99 5.70 30.57 0.17 -1.82 16 25 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 26 H 0.00 -0.09 7.83 -2.38 -0.02 -0.11 16 27 H -0.05 -2.77 8.12 -2.39 -0.02 -2.79 16 28 H 0.06 2.60 6.58 -2.39 -0.02 2.58 16 29 H 0.02 0.62 7.44 -2.39 -0.02 0.60 16 30 H 0.11 3.37 6.73 -2.39 -0.02 3.36 16 31 H 0.09 2.10 8.03 -2.39 -0.02 2.09 16 32 H 0.11 2.14 8.11 -2.39 -0.02 2.12 16 33 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.94 6.05 -2.39 -0.01 1.93 16 36 H 0.01 0.43 7.72 -2.38 -0.02 0.42 16 37 H 0.04 1.50 7.27 -2.39 -0.02 1.48 16 38 H 0.05 1.57 7.40 -2.39 -0.02 1.55 16 39 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.04 1.12 8.14 -2.38 -0.02 1.11 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.04 1.21 6.44 -2.39 -0.02 1.19 16 44 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -63.85 349.14 2.94 -60.91 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.90 Total: 16.29 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 3.12 Total: -40.14 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -3.11 Total: -84.25 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -63.85 2.94 -60.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641934931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.498 kcal (2) G-P(sol) polarization free energy of solvation -63.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds