Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47244 * 2 1 4 4 C 1.53002 * 109.47102 * 119.99986 * 2 1 3 5 5 C 1.50709 * 109.47066 * 62.83002 * 4 2 1 6 6 H 1.07999 * 119.99816 * 5.12814 * 5 4 2 7 7 C 1.37876 * 119.99959 * 185.12378 * 5 4 2 8 8 N 1.31517 * 120.00156 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46927 * 60.00066 * 9 7 5 11 11 H 1.48496 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46840 * 300.00627 * 9 7 5 13 13 N 1.46897 * 109.46819 * 239.99610 * 2 1 3 14 14 C 1.46846 * 110.99982 * 62.07374 * 13 2 1 15 15 C 1.53038 * 109.52435 * 185.83523 * 14 13 2 16 16 C 1.53111 * 109.27958 * 300.81862 * 15 14 13 17 17 C 1.50702 * 109.52588 * 177.55649 * 16 15 14 18 18 C 1.34671 * 126.59130 * 325.17192 * 17 16 15 19 19 N 1.34124 * 108.01848 * 180.27591 * 18 17 16 20 20 C 1.30500 * 109.26129 * 359.73544 * 19 18 17 21 21 N 1.35047 * 108.69566 * 359.97438 * 20 19 18 22 22 C 1.46499 * 126.39697 * 180.02562 * 21 20 19 23 23 C 1.53126 * 109.16206 * 57.65501 * 16 15 14 24 24 C 1.46853 * 111.00017 * 186.27724 * 13 2 1 25 25 H 1.09000 * 109.47301 * 300.00238 * 1 2 3 26 26 H 1.09000 * 109.47059 * 59.99868 * 1 2 3 27 27 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47407 * 182.82795 * 4 2 1 29 29 H 1.09003 * 109.46877 * 302.83647 * 4 2 1 30 30 H 0.96995 * 120.00084 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46266 * 65.81777 * 14 13 2 32 32 H 1.08997 * 109.45981 * 305.85111 * 14 13 2 33 33 H 1.09003 * 109.50277 * 180.87451 * 15 14 13 34 34 H 1.09006 * 109.53464 * 60.78218 * 15 14 13 35 35 H 1.09004 * 109.52616 * 297.68412 * 16 15 14 36 36 H 1.08002 * 125.98950 * 0.04257 * 18 17 16 37 37 H 1.07994 * 125.65590 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.47133 * 90.02665 * 22 21 20 39 39 H 1.08997 * 109.47206 * 330.03135 * 22 21 20 40 40 H 1.08994 * 109.47510 * 210.02722 * 22 21 20 41 41 H 1.09000 * 109.50188 * 62.28206 * 23 16 15 42 42 H 1.08994 * 109.50318 * 182.40546 * 23 16 15 43 43 H 1.08993 * 109.46344 * 294.18423 * 24 13 2 44 44 H 1.09000 * 109.45931 * 54.14802 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5957 -2.1610 1.2147 6 1 1.0802 -2.5463 0.3474 7 6 1.8475 -2.9861 2.2902 8 7 2.4749 -2.5168 3.3465 9 14 1.2975 -4.7708 2.2471 10 1 1.9479 -5.4617 1.1048 11 1 1.6844 -5.4388 3.5156 12 1 -0.1776 -4.8303 2.0866 13 7 2.0196 -0.6926 -1.1994 14 6 1.5896 0.0013 -2.4201 15 6 1.9913 -0.8230 -3.6453 16 6 3.5106 -1.0120 -3.6516 17 6 3.9062 -1.8735 -4.8231 18 6 3.2037 -2.9009 -5.3375 19 7 3.9011 -3.4071 -6.3653 20 6 5.0065 -2.7288 -6.5110 21 7 5.0469 -1.7598 -5.5712 22 6 6.1151 -0.7751 -5.3834 23 6 3.9379 -1.6930 -2.3484 24 6 3.4798 -0.8434 -1.1608 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1288 -0.6776 1.2750 29 1 1.6357 -0.2376 2.1385 30 1 2.6516 -3.0972 4.1032 31 1 2.0667 0.9801 -2.4686 32 1 0.5069 0.1255 -2.4049 33 1 1.6857 -0.3002 -4.5517 34 1 1.5035 -1.7971 -3.6052 35 1 3.9983 -0.0405 -3.7329 36 1 2.2482 -3.2574 -4.9820 37 1 5.7631 -2.9115 -7.2596 38 1 5.9001 0.1123 -5.9787 39 1 7.0651 -1.2044 -5.7014 40 1 6.1750 -0.5003 -4.3303 41 1 3.4808 -2.6806 -2.2871 42 1 5.0232 -1.7916 -2.3282 43 1 3.9480 0.1394 -1.2152 44 1 3.7699 -1.3327 -0.2310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648645014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 56.102666 kcal Electronic energy + Delta-G solvation = -22379.168404 eV Core-core repulsion = 19332.108702 eV Total energy + Delta-G solvation = -3047.059702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11818 -38.80138 -35.25509 -34.03774 -32.54763 -30.76026 -30.54571 -28.10677 -27.06247 -26.89176 -24.20282 -23.37070 -22.21688 -21.43469 -20.27146 -19.18837 -18.93007 -17.16988 -16.37942 -15.73792 -15.27632 -14.81070 -14.57750 -14.24958 -13.76968 -13.63749 -13.56004 -13.25666 -13.11738 -12.88995 -12.84672 -12.72552 -12.23082 -11.91942 -11.17829 -11.05508 -10.97018 -10.84457 -10.76162 -10.70611 -10.52891 -10.29321 -10.09676 -9.83728 -9.76465 -9.55126 -9.08800 -8.94668 -8.26421 -8.21492 -7.45543 -5.87934 -3.85420 2.05245 2.73390 3.22841 3.42707 3.46464 3.50725 4.49944 4.52973 4.58126 4.63202 4.69020 4.87548 4.93698 5.12846 5.16505 5.37046 5.46192 5.48917 5.57149 5.70362 5.77106 5.87437 5.92068 5.95190 6.03723 6.06159 6.21220 6.27093 6.30226 6.37195 6.47052 6.58483 6.72940 6.74965 6.83721 6.95435 7.18042 7.18747 7.57190 7.68567 7.94694 8.01593 8.10818 8.14910 8.60128 9.22936 9.76992 11.24082 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019181 B = 0.004804 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.405469 B = 5826.811944 C = 6417.631960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.089 3.911 3 H 0.009 0.991 4 C 0.024 3.976 5 C -0.486 4.486 6 H 0.068 0.932 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.511 5.511 14 C 0.051 3.949 15 C -0.100 4.100 16 C -0.011 4.011 17 C -0.006 4.006 18 C -0.025 4.025 19 N -0.494 5.494 20 C 0.167 3.833 21 N -0.462 5.462 22 C 0.072 3.928 23 C -0.102 4.102 24 C 0.059 3.941 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.013 0.987 29 H 0.022 0.978 30 H 0.257 0.743 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.169 0.831 37 H 0.201 0.799 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.014 0.986 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 6.385 -16.644 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.019 4.019 3 H 0.027 0.973 4 C -0.013 4.013 5 C -0.525 4.525 6 H 0.086 0.914 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.205 1.205 13 N -0.236 5.236 14 C -0.078 4.078 15 C -0.139 4.139 16 C -0.031 4.031 17 C -0.120 4.120 18 C -0.173 4.173 19 N -0.212 5.212 20 C -0.114 4.114 21 N -0.146 5.146 22 C -0.071 4.071 23 C -0.140 4.140 24 C -0.068 4.068 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.186 0.814 37 H 0.217 0.783 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.364 5.298 -16.949 18.550 hybrid contribution 0.577 0.520 0.518 0.934 sum 5.941 5.819 -16.431 18.415 Atomic orbital electron populations 1.21763 0.95373 1.02791 0.98925 1.21737 0.95103 0.93256 0.91768 0.97322 1.19284 0.95823 0.95896 0.90322 1.21156 1.35624 0.94454 1.01229 0.91423 1.25023 0.95844 0.98255 0.95783 1.69956 1.42708 1.35781 1.06188 0.86727 0.79064 0.85708 0.76878 1.20363 1.21795 1.20460 1.61835 1.10725 1.50209 1.00842 1.22134 1.00677 0.94238 0.90701 1.21564 0.93401 1.01746 0.97148 1.19701 0.97196 0.95919 0.90258 1.21396 0.89155 1.02800 0.98653 1.22065 1.01631 0.96990 0.96569 1.70250 1.04748 1.27384 1.18841 1.24833 0.99661 0.90149 0.96770 1.45293 1.17276 1.26395 1.25634 1.22008 0.89346 0.91703 1.04063 1.21629 0.99481 1.00688 0.92233 1.22093 0.87970 0.97125 0.99654 0.93279 0.94999 0.90832 0.96920 0.95949 0.93330 0.96329 0.90505 0.92128 0.90354 0.91579 0.81388 0.78271 0.90734 0.89541 0.89544 0.90258 0.92674 0.96796 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.81 37.16 0.33 -2.11 16 2 C 0.09 1.78 2.34 -67.71 -0.16 1.62 16 3 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 4 C 0.02 0.59 4.19 -27.88 -0.12 0.47 16 5 C -0.49 -13.06 7.63 -34.44 -0.26 -13.33 16 6 H 0.07 1.83 6.86 -52.49 -0.36 1.47 16 7 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.51 -9.35 3.85 -226.70 -0.87 -10.22 16 14 C 0.05 0.76 5.25 -3.83 -0.02 0.74 16 15 C -0.10 -1.33 5.02 -26.65 -0.13 -1.46 16 16 C -0.01 -0.14 2.34 -91.65 -0.21 -0.35 16 17 C -0.01 -0.08 5.88 -81.60 -0.48 -0.56 16 18 C -0.03 -0.37 11.06 -17.81 -0.20 -0.57 16 19 N -0.49 -7.39 11.25 -14.67 -0.16 -7.56 16 20 C 0.17 1.94 12.56 -90.37 -1.14 0.81 16 21 N -0.46 -5.12 3.15 -121.37 -0.38 -5.50 16 22 C 0.07 0.49 10.83 59.85 0.65 1.14 16 23 C -0.10 -1.55 5.36 -26.65 -0.14 -1.69 16 24 C 0.06 1.05 5.03 -3.83 -0.02 1.03 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.50 6.33 -51.93 -0.33 0.17 16 27 H 0.07 1.50 6.91 -51.93 -0.36 1.14 16 28 H 0.01 0.33 6.37 -51.93 -0.33 0.00 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 1.12 6.07 -51.93 -0.32 0.80 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.11 7.20 -51.93 -0.37 0.73 16 35 H 0.07 0.79 7.63 -51.93 -0.40 0.40 16 36 H 0.17 2.35 7.33 -52.49 -0.38 1.96 16 37 H 0.20 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 0.61 7.67 -51.93 -0.40 0.21 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.10 2.13 5.74 -51.93 -0.30 1.84 16 LS Contribution 340.05 15.07 5.12 5.12 Total: -1.00 -31.65 340.05 -9.91 -41.57 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.33 Total: -1.24 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.00 Total: -12.93 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.68 Total: -49.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.65 -9.91 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648645014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.669 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds