Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47244 * 2 1 4 4 C 1.53002 * 109.47102 * 119.99986 * 2 1 3 5 5 C 1.50709 * 109.47066 * 62.83002 * 4 2 1 6 6 H 1.07999 * 119.99816 * 5.12814 * 5 4 2 7 7 C 1.37876 * 119.99959 * 185.12378 * 5 4 2 8 8 N 1.31517 * 120.00156 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46927 * 60.00066 * 9 7 5 11 11 H 1.48496 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46840 * 300.00627 * 9 7 5 13 13 N 1.46897 * 109.46819 * 239.99610 * 2 1 3 14 14 C 1.46846 * 110.99982 * 62.07374 * 13 2 1 15 15 C 1.53038 * 109.52435 * 185.83523 * 14 13 2 16 16 C 1.53111 * 109.27958 * 300.81862 * 15 14 13 17 17 C 1.50702 * 109.52588 * 177.55649 * 16 15 14 18 18 C 1.34671 * 126.59130 * 325.17192 * 17 16 15 19 19 N 1.34124 * 108.01848 * 180.27591 * 18 17 16 20 20 C 1.30500 * 109.26129 * 359.73544 * 19 18 17 21 21 N 1.35047 * 108.69566 * 359.97438 * 20 19 18 22 22 C 1.46499 * 126.39697 * 180.02562 * 21 20 19 23 23 C 1.53126 * 109.16206 * 57.65501 * 16 15 14 24 24 C 1.46853 * 111.00017 * 186.27724 * 13 2 1 25 25 H 1.09000 * 109.47301 * 300.00238 * 1 2 3 26 26 H 1.09000 * 109.47059 * 59.99868 * 1 2 3 27 27 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47407 * 182.82795 * 4 2 1 29 29 H 1.09003 * 109.46877 * 302.83647 * 4 2 1 30 30 H 0.96995 * 120.00084 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46266 * 65.81777 * 14 13 2 32 32 H 1.08997 * 109.45981 * 305.85111 * 14 13 2 33 33 H 1.09003 * 109.50277 * 180.87451 * 15 14 13 34 34 H 1.09006 * 109.53464 * 60.78218 * 15 14 13 35 35 H 1.09004 * 109.52616 * 297.68412 * 16 15 14 36 36 H 1.08002 * 125.98950 * 0.04257 * 18 17 16 37 37 H 1.07994 * 125.65590 * 180.02562 * 20 19 18 38 38 H 1.08998 * 109.47133 * 90.02665 * 22 21 20 39 39 H 1.08997 * 109.47206 * 330.03135 * 22 21 20 40 40 H 1.08994 * 109.47510 * 210.02722 * 22 21 20 41 41 H 1.09000 * 109.50188 * 62.28206 * 23 16 15 42 42 H 1.08994 * 109.50318 * 182.40546 * 23 16 15 43 43 H 1.08993 * 109.46344 * 294.18423 * 24 13 2 44 44 H 1.09000 * 109.45931 * 54.14802 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5957 -2.1610 1.2147 6 1 1.0802 -2.5463 0.3474 7 6 1.8475 -2.9861 2.2902 8 7 2.4749 -2.5168 3.3465 9 14 1.2975 -4.7708 2.2471 10 1 1.9479 -5.4617 1.1048 11 1 1.6844 -5.4388 3.5156 12 1 -0.1776 -4.8303 2.0866 13 7 2.0196 -0.6926 -1.1994 14 6 1.5896 0.0013 -2.4201 15 6 1.9913 -0.8230 -3.6453 16 6 3.5106 -1.0120 -3.6516 17 6 3.9062 -1.8735 -4.8231 18 6 3.2037 -2.9009 -5.3375 19 7 3.9011 -3.4071 -6.3653 20 6 5.0065 -2.7288 -6.5110 21 7 5.0469 -1.7598 -5.5712 22 6 6.1151 -0.7751 -5.3834 23 6 3.9379 -1.6930 -2.3484 24 6 3.4798 -0.8434 -1.1608 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1288 -0.6776 1.2750 29 1 1.6357 -0.2376 2.1385 30 1 2.6516 -3.0972 4.1032 31 1 2.0667 0.9801 -2.4686 32 1 0.5069 0.1255 -2.4049 33 1 1.6857 -0.3002 -4.5517 34 1 1.5035 -1.7971 -3.6052 35 1 3.9983 -0.0405 -3.7329 36 1 2.2482 -3.2574 -4.9820 37 1 5.7631 -2.9115 -7.2596 38 1 5.9001 0.1123 -5.9787 39 1 7.0651 -1.2044 -5.7014 40 1 6.1750 -0.5003 -4.3303 41 1 3.4808 -2.6806 -2.2871 42 1 5.0232 -1.7916 -2.3282 43 1 3.9480 0.1394 -1.2152 44 1 3.7699 -1.3327 -0.2310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648645014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 38.381113 kcal Electronic energy + Delta-G solvation = -22379.936868 eV Core-core repulsion = 19332.108702 eV Total energy + Delta-G solvation = -3047.828166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.04131 -40.15717 -36.71465 -34.89109 -34.47493 -32.18204 -31.89420 -29.29976 -28.67541 -27.74118 -25.78624 -24.89069 -23.55485 -22.47277 -21.35709 -20.67184 -20.15160 -18.36055 -18.01750 -16.82763 -16.55241 -16.47531 -15.79591 -15.66370 -15.17064 -14.89265 -14.63682 -14.46327 -14.29144 -14.16563 -13.89783 -13.67808 -13.52778 -13.41077 -12.89741 -12.73670 -12.64907 -12.51523 -12.21091 -12.12970 -12.01588 -11.83342 -11.59122 -11.28144 -10.96786 -10.89404 -10.78183 -10.44212 -10.39860 -9.23521 -8.88929 -8.06387 -6.08772 1.13277 1.43409 1.44838 1.52131 1.96632 2.23611 2.49548 3.13271 3.30788 3.61296 3.82379 3.93061 3.98447 4.03643 4.30370 4.31392 4.36858 4.43634 4.45876 4.49531 4.60817 4.64377 4.67094 4.70298 4.73742 4.85726 4.88557 5.01038 5.06188 5.16914 5.25831 5.26904 5.30597 5.36361 5.50113 5.58480 5.60256 5.73875 5.82740 5.93418 6.34785 6.37564 6.52362 6.62760 7.06231 7.16996 7.56881 9.05862 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.019181 B = 0.004804 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.405469 B = 5826.811944 C = 6417.631960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.095 3.905 3 H 0.020 0.980 4 C 0.029 3.971 5 C -0.480 4.480 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.942 5.942 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.270 1.270 13 N -0.529 5.529 14 C 0.053 3.947 15 C -0.095 4.095 16 C 0.002 3.998 17 C -0.011 4.011 18 C -0.050 4.050 19 N -0.538 5.538 20 C 0.177 3.823 21 N -0.460 5.460 22 C 0.064 3.936 23 C -0.092 4.092 24 C 0.065 3.935 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.050 0.950 28 H -0.008 1.008 29 H -0.007 1.007 30 H 0.256 0.744 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.160 0.840 37 H 0.239 0.761 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.191 7.264 -19.099 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.013 4.013 3 H 0.038 0.962 4 C -0.008 4.008 5 C -0.519 4.519 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.585 5.585 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.196 1.196 13 N -0.254 5.254 14 C -0.075 4.075 15 C -0.133 4.133 16 C -0.017 4.017 17 C -0.126 4.126 18 C -0.197 4.197 19 N -0.257 5.257 20 C -0.105 4.105 21 N -0.143 5.143 22 C -0.078 4.078 23 C -0.130 4.130 24 C -0.063 4.063 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.178 0.822 37 H 0.255 0.745 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.923 6.195 -19.417 21.225 hybrid contribution 0.470 0.282 1.237 1.353 sum 6.393 6.477 -18.180 20.331 Atomic orbital electron populations 1.21679 0.94089 1.01815 1.00576 1.21519 0.96051 0.93101 0.90586 0.96214 1.19147 0.94435 0.95366 0.91819 1.21382 1.34363 0.95483 1.00655 0.91659 1.25780 0.96283 1.02217 0.95693 1.70083 1.44366 1.37121 1.06902 0.85762 0.78948 0.81102 0.76745 1.20098 1.21663 1.19563 1.61764 1.11078 1.51091 1.01489 1.22198 1.01147 0.94750 0.89356 1.21513 0.93529 1.01046 0.97191 1.19532 0.97104 0.96352 0.88756 1.21259 0.90000 1.02502 0.98848 1.22126 1.02102 0.98050 0.97434 1.70205 1.06491 1.29178 1.19815 1.25581 0.99190 0.89001 0.96738 1.45524 1.17280 1.26729 1.24747 1.22344 0.89198 0.91636 1.04572 1.21490 0.99867 0.98985 0.92694 1.21940 0.87963 0.97724 0.98701 0.93383 0.91605 0.93042 0.98959 0.98868 0.93499 0.94887 0.89863 0.89944 0.91741 0.89675 0.82235 0.74465 0.88933 0.86913 0.89625 0.92951 0.91579 0.95397 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.81 71.98 0.63 -3.85 16 2 C 0.10 3.80 2.34 44.92 0.11 3.90 16 3 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 4 C 0.03 1.50 4.19 29.85 0.13 1.63 16 5 C -0.48 -26.47 7.63 25.60 0.20 -26.27 16 6 H 0.07 3.58 6.86 -2.91 -0.02 3.56 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 8 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 9 Si 0.95 45.75 29.54 68.60 2.03 47.78 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.53 -19.01 3.85 -871.13 -3.35 -22.37 16 14 C 0.05 1.45 5.25 86.33 0.45 1.91 16 15 C -0.09 -2.30 5.02 30.64 0.15 -2.15 16 16 C 0.00 0.06 2.34 -11.46 -0.03 0.03 16 17 C -0.01 -0.26 5.88 40.95 0.24 -0.02 16 18 C -0.05 -1.45 11.06 83.52 0.92 -0.52 16 19 N -0.54 -15.53 11.25 -200.31 -2.25 -17.79 16 20 C 0.18 3.64 12.56 180.26 2.26 5.91 16 21 N -0.46 -8.85 3.15 -537.90 -1.70 -10.55 16 22 C 0.06 0.63 10.83 127.77 1.38 2.01 16 23 C -0.09 -2.73 5.36 30.65 0.16 -2.57 16 24 C 0.06 2.27 5.03 86.32 0.43 2.71 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.92 6.33 -2.39 -0.02 1.90 16 27 H 0.05 2.08 6.91 -2.38 -0.02 2.06 16 28 H -0.01 -0.43 6.37 -2.39 -0.02 -0.44 16 29 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 2.18 6.07 -2.39 -0.01 2.16 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.77 7.20 -2.38 -0.02 1.75 16 35 H 0.09 1.74 7.63 -2.38 -0.02 1.72 16 36 H 0.16 4.60 7.33 -2.91 -0.02 4.58 16 37 H 0.24 2.64 8.06 -2.91 -0.02 2.62 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.90 7.67 -2.39 -0.02 0.88 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 2.55 5.74 -2.39 -0.01 2.53 16 Total: -1.00 -70.54 340.05 3.49 -67.05 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.96 Total: 10.18 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: 7.51 Total: -17.07 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -7.02 Total: -107.94 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.54 3.49 -67.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648645014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.432 kcal (2) G-P(sol) polarization free energy of solvation -70.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds