Wall clock time and date at job start Mon Mar 30 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99863 * 2 1 4 4 C 1.52994 * 109.47196 * 119.05219 * 3 2 1 5 5 H 1.09007 * 109.46296 * 53.58210 * 4 3 2 6 6 N 1.46846 * 109.45294 * 173.55591 * 4 3 2 7 7 C 1.46896 * 111.00216 * 305.84700 * 6 4 3 8 8 C 1.53009 * 109.46859 * 117.40883 * 7 6 4 9 9 C 1.50698 * 115.54674 * 66.76268 * 8 7 6 10 10 H 1.08001 * 120.00283 * 356.24190 * 9 8 7 11 11 C 1.37879 * 119.99807 * 176.23842 * 9 8 7 12 12 N 1.31512 * 120.00204 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99776 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47555 * 60.00278 * 13 11 9 15 15 H 1.48508 * 109.47254 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47296 * 300.00018 * 13 11 9 17 17 C 1.52995 * 117.49825 * 281.09371 * 8 7 6 18 18 C 1.52997 * 117.49730 * 212.42893 * 8 7 6 19 19 C 1.46853 * 111.19685 * 181.75103 * 6 4 3 20 20 C 1.53036 * 109.52323 * 298.25946 * 19 6 4 21 21 C 1.53121 * 109.27774 * 59.17936 * 20 19 6 22 22 C 1.53033 * 109.46391 * 293.60588 * 4 3 2 23 23 C 1.52999 * 109.50420 * 300.75618 * 22 4 3 24 24 C 1.53004 * 109.50401 * 60.87048 * 22 4 3 25 25 H 1.07998 * 120.00194 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99640 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00194 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47162 * 359.04761 * 3 2 1 29 29 H 1.09001 * 109.46897 * 239.05116 * 3 2 1 30 30 H 1.08991 * 109.47561 * 237.40901 * 7 6 4 31 31 H 1.09005 * 109.47098 * 357.41462 * 7 6 4 32 32 H 0.96994 * 120.00304 * 179.97438 * 12 11 9 33 33 H 1.09000 * 117.49983 * 359.97438 * 17 8 7 34 34 H 1.09005 * 117.49683 * 145.02375 * 17 8 7 35 35 H 1.08996 * 117.49928 * 214.97913 * 18 8 7 36 36 H 1.09002 * 117.50114 * 359.97438 * 18 8 7 37 37 H 1.09001 * 109.45862 * 178.24321 * 19 6 4 38 38 H 1.09005 * 109.45845 * 58.27552 * 19 6 4 39 39 H 1.08994 * 109.50637 * 299.23874 * 20 19 6 40 40 H 1.09000 * 109.50126 * 179.12097 * 20 19 6 41 41 H 1.08997 * 109.51988 * 182.43810 * 21 20 19 42 42 H 1.08999 * 109.52457 * 62.25079 * 21 20 19 43 43 H 1.09006 * 109.47189 * 59.99940 * 23 22 4 44 44 H 1.08999 * 109.47835 * 179.97438 * 23 22 4 45 45 H 1.08996 * 109.47203 * 300.00531 * 23 22 4 46 46 H 1.09005 * 109.47037 * 29.84120 * 24 22 4 47 47 H 1.08998 * 109.47010 * 149.83048 * 24 22 4 48 48 H 1.08997 * 109.47368 * 269.83751 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9251 1.3967 1.2609 5 1 3.5537 0.5093 1.3365 6 7 3.7739 2.5927 1.1876 7 6 4.5574 2.6069 -0.0549 8 6 4.1601 3.8229 -0.8944 9 6 4.5224 5.1634 -0.3088 10 1 4.9738 5.2206 0.6707 11 6 4.2775 6.3168 -1.0235 12 7 3.7274 6.2472 -2.2159 13 14 4.7272 7.9782 -0.2978 14 1 6.1876 8.0238 -0.0327 15 1 4.3641 9.0521 -1.2573 16 1 3.9868 8.1799 0.9735 17 6 2.8631 3.7314 -1.7007 18 6 4.2151 3.6788 -2.4166 19 6 4.6487 2.6959 2.3626 20 6 3.7949 2.8246 3.6262 21 6 2.8862 1.5983 3.7492 22 6 2.0200 1.4865 2.4916 23 6 1.1236 2.7211 2.3774 24 6 1.1513 0.2300 2.5797 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3553 2.1336 -0.0171 29 1 2.7029 1.3556 -0.8814 30 1 5.6190 2.6626 0.1856 31 1 4.3600 1.6956 -0.6193 32 1 3.5547 7.0586 -2.7186 33 1 2.2930 2.8048 -1.6334 34 1 2.2720 4.6409 -1.8079 35 1 4.5129 4.5537 -2.9945 36 1 4.5347 2.7179 -2.8200 37 1 5.2866 3.5743 2.2643 38 1 5.2692 1.8025 2.4329 39 1 3.1842 3.7251 3.5626 40 1 4.4443 2.8854 4.4995 41 1 2.2455 1.7062 4.6244 42 1 3.4967 0.7013 3.8519 43 1 0.5096 2.6426 1.4801 44 1 0.4787 2.7844 3.2539 45 1 1.7433 3.6157 2.3164 46 1 1.6853 -0.6124 2.1398 47 1 0.9300 0.0139 3.6248 48 1 0.2202 0.3932 2.0372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654317318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:42 Heat of formation + Delta-G solvation = 59.142216 kcal Electronic energy + Delta-G solvation = -24025.821364 eV Core-core repulsion = 21082.433811 eV Total energy + Delta-G solvation = -2943.387554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02515 -36.58613 -35.16766 -33.76168 -31.51245 -31.03525 -28.28958 -26.88040 -26.14081 -25.32917 -24.67799 -21.60468 -21.21737 -20.40551 -19.46798 -18.65342 -17.88152 -15.95898 -15.45121 -15.09245 -14.82436 -14.73895 -14.30378 -13.76847 -13.67797 -13.29534 -12.92540 -12.62773 -12.49135 -12.34178 -12.07175 -11.78181 -11.58312 -11.24591 -11.05372 -10.96356 -10.92319 -10.80166 -10.61231 -10.50491 -10.39557 -10.12977 -10.03701 -10.01516 -9.81716 -9.68643 -9.30988 -8.69254 -8.51349 -8.14756 -7.87235 -7.37772 -5.80255 -3.83888 2.49944 3.36610 3.41463 3.44140 4.42429 4.50204 4.93163 5.03582 5.14924 5.21987 5.30642 5.44872 5.46917 5.62578 5.74291 5.77910 5.82228 5.83950 5.91586 5.94332 6.01230 6.05028 6.12919 6.17363 6.20114 6.27683 6.32117 6.37948 6.44004 6.47003 6.52611 6.60818 6.62233 6.70462 6.74001 6.89668 6.96230 7.00860 7.07482 7.18301 7.37845 7.48816 7.82488 7.91212 7.98368 8.19275 8.42037 8.69595 9.11443 9.69161 11.14622 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.006692 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.099522 B = 4183.076867 C = 4914.901254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.101 4.101 4 C 0.108 3.892 5 H 0.025 0.975 6 N -0.510 5.510 7 C 0.095 3.905 8 C 0.037 3.963 9 C -0.451 4.451 10 H 0.056 0.944 11 C 0.055 3.945 12 N -0.883 5.883 13 Si 0.890 3.110 14 H -0.280 1.280 15 H -0.290 1.290 16 H -0.279 1.279 17 C -0.187 4.187 18 C -0.200 4.200 19 C 0.062 3.938 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.052 4.052 23 C -0.134 4.134 24 C -0.148 4.148 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.255 0.745 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.017 0.983 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.077 0.923 46 H 0.052 0.948 47 H 0.041 0.959 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 -11.200 8.395 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.152 4.152 3 C -0.138 4.138 4 C -0.001 4.001 5 H 0.043 0.957 6 N -0.234 5.234 7 C -0.031 4.031 8 C 0.036 3.964 9 C -0.489 4.489 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.522 5.522 13 Si 0.719 3.281 14 H -0.206 1.206 15 H -0.216 1.216 16 H -0.204 1.204 17 C -0.224 4.224 18 C -0.239 4.239 19 C -0.066 4.066 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.053 4.053 23 C -0.191 4.191 24 C -0.205 4.205 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.004 -10.643 8.259 14.054 hybrid contribution 0.757 0.148 0.284 0.822 sum -3.247 -10.495 8.543 13.916 Atomic orbital electron populations 1.23650 0.95920 1.01302 1.03654 1.22923 0.96079 0.98434 0.97741 1.21315 0.99508 0.94996 0.97970 1.21574 0.93632 0.90876 0.94025 0.95723 1.61746 1.22816 1.37284 1.01507 1.21750 0.94808 0.97107 0.89469 1.18809 0.97546 0.92380 0.87706 1.20471 1.37823 0.88995 1.01633 0.92555 1.24974 0.95625 0.98853 0.95052 1.69993 1.43565 1.27251 1.11425 0.86693 0.78651 0.83940 0.78831 1.20587 1.21572 1.20436 1.22874 0.91600 0.99689 1.08270 1.23020 1.02678 0.99146 0.99033 1.22102 0.94183 0.99881 0.90417 1.21639 0.98298 0.99040 0.96666 1.21676 0.97786 0.97907 0.97130 1.20503 0.95008 0.95749 0.94007 1.21875 0.98733 0.98486 0.99975 1.22492 1.00255 0.97045 1.00722 0.88570 0.89194 0.88311 0.89462 0.89612 0.93822 0.94526 0.93410 0.92903 0.88715 0.86542 0.94829 0.90403 0.96518 0.90559 0.92536 0.92460 0.93009 0.92828 0.94390 0.90377 0.92872 0.93945 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.50 11.60 29.01 0.34 -2.16 16 2 C -0.13 -1.74 6.44 -36.02 -0.23 -1.97 16 3 C -0.10 -1.60 3.31 -27.88 -0.09 -1.69 16 4 C 0.11 1.69 1.05 -67.73 -0.07 1.61 16 5 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 6 N -0.51 -9.27 3.56 -226.68 -0.81 -10.08 16 7 C 0.10 1.95 4.66 -3.82 -0.02 1.93 16 8 C 0.04 0.89 2.28 -155.66 -0.35 0.53 16 9 C -0.45 -12.13 9.13 -34.44 -0.31 -12.44 16 10 H 0.06 1.50 7.48 -52.49 -0.39 1.11 16 11 C 0.05 1.50 5.28 -17.82 -0.09 1.40 16 12 N -0.88 -24.73 8.60 55.43 0.48 -24.25 16 13 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 C -0.19 -4.54 8.90 -26.69 -0.24 -4.78 16 18 C -0.20 -4.98 9.33 -26.69 -0.25 -5.23 16 19 C 0.06 1.03 5.13 -3.83 -0.02 1.01 16 20 C -0.12 -1.69 5.74 -26.65 -0.15 -1.85 16 21 C -0.11 -1.40 4.61 -26.61 -0.12 -1.53 16 22 C -0.05 -0.72 0.54 -154.43 -0.08 -0.81 16 23 C -0.13 -2.01 7.51 37.16 0.28 -1.73 16 24 C -0.15 -1.79 7.30 37.16 0.27 -1.52 16 25 H 0.10 1.19 7.83 -52.49 -0.41 0.78 16 26 H 0.09 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.10 1.19 7.95 -52.49 -0.42 0.77 16 28 H 0.09 1.53 5.14 -51.93 -0.27 1.26 16 29 H 0.09 1.52 4.27 -51.93 -0.22 1.30 16 30 H 0.04 0.89 7.53 -51.93 -0.39 0.50 16 31 H 0.04 0.71 5.79 -51.93 -0.30 0.41 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.05 1.16 4.35 -51.93 -0.23 0.93 16 34 H 0.09 2.61 6.61 -51.93 -0.34 2.27 16 35 H 0.12 3.22 5.96 -51.93 -0.31 2.91 16 36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.40 7.78 -51.93 -0.40 0.99 16 38 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 1.19 6.58 -51.93 -0.34 0.85 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.82 6.25 -51.93 -0.32 0.50 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 1.37 6.01 -51.93 -0.31 1.06 16 46 H 0.05 0.63 6.37 -51.93 -0.33 0.30 16 47 H 0.04 0.47 7.84 -51.93 -0.41 0.06 16 48 H 0.07 0.84 4.85 -51.93 -0.25 0.59 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -26.90 337.73 -9.58 -36.49 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.17 Total: 5.64 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: -1.16 Total: -29.21 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: -0.33 Total: -34.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -26.90 -9.58 -36.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654317318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.628 kcal (2) G-P(sol) polarization free energy of solvation -26.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds