Wall clock time and date at job start Mon Mar 30 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 119.99863 * 2 1 4 4 C 1.52994 * 109.47196 * 119.05219 * 3 2 1 5 5 H 1.09007 * 109.46296 * 53.58210 * 4 3 2 6 6 N 1.46846 * 109.45294 * 173.55591 * 4 3 2 7 7 C 1.46896 * 111.00216 * 305.84700 * 6 4 3 8 8 C 1.53009 * 109.46859 * 117.40883 * 7 6 4 9 9 C 1.50698 * 115.54674 * 66.76268 * 8 7 6 10 10 H 1.08001 * 120.00283 * 356.24190 * 9 8 7 11 11 C 1.37879 * 119.99807 * 176.23842 * 9 8 7 12 12 N 1.31512 * 120.00204 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99776 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47555 * 60.00278 * 13 11 9 15 15 H 1.48508 * 109.47254 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47296 * 300.00018 * 13 11 9 17 17 C 1.52995 * 117.49825 * 281.09371 * 8 7 6 18 18 C 1.52997 * 117.49730 * 212.42893 * 8 7 6 19 19 C 1.46853 * 111.19685 * 181.75103 * 6 4 3 20 20 C 1.53036 * 109.52323 * 298.25946 * 19 6 4 21 21 C 1.53121 * 109.27774 * 59.17936 * 20 19 6 22 22 C 1.53033 * 109.46391 * 293.60588 * 4 3 2 23 23 C 1.52999 * 109.50420 * 300.75618 * 22 4 3 24 24 C 1.53004 * 109.50401 * 60.87048 * 22 4 3 25 25 H 1.07998 * 120.00194 * 359.97438 * 1 2 3 26 26 H 1.07996 * 119.99640 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00194 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47162 * 359.04761 * 3 2 1 29 29 H 1.09001 * 109.46897 * 239.05116 * 3 2 1 30 30 H 1.08991 * 109.47561 * 237.40901 * 7 6 4 31 31 H 1.09005 * 109.47098 * 357.41462 * 7 6 4 32 32 H 0.96994 * 120.00304 * 179.97438 * 12 11 9 33 33 H 1.09000 * 117.49983 * 359.97438 * 17 8 7 34 34 H 1.09005 * 117.49683 * 145.02375 * 17 8 7 35 35 H 1.08996 * 117.49928 * 214.97913 * 18 8 7 36 36 H 1.09002 * 117.50114 * 359.97438 * 18 8 7 37 37 H 1.09001 * 109.45862 * 178.24321 * 19 6 4 38 38 H 1.09005 * 109.45845 * 58.27552 * 19 6 4 39 39 H 1.08994 * 109.50637 * 299.23874 * 20 19 6 40 40 H 1.09000 * 109.50126 * 179.12097 * 20 19 6 41 41 H 1.08997 * 109.51988 * 182.43810 * 21 20 19 42 42 H 1.08999 * 109.52457 * 62.25079 * 21 20 19 43 43 H 1.09006 * 109.47189 * 59.99940 * 23 22 4 44 44 H 1.08999 * 109.47835 * 179.97438 * 23 22 4 45 45 H 1.08996 * 109.47203 * 300.00531 * 23 22 4 46 46 H 1.09005 * 109.47037 * 29.84120 * 24 22 4 47 47 H 1.08998 * 109.47010 * 149.83048 * 24 22 4 48 48 H 1.08997 * 109.47368 * 269.83751 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9251 1.3967 1.2609 5 1 3.5537 0.5093 1.3365 6 7 3.7739 2.5927 1.1876 7 6 4.5574 2.6069 -0.0549 8 6 4.1601 3.8229 -0.8944 9 6 4.5224 5.1634 -0.3088 10 1 4.9738 5.2206 0.6707 11 6 4.2775 6.3168 -1.0235 12 7 3.7274 6.2472 -2.2159 13 14 4.7272 7.9782 -0.2978 14 1 6.1876 8.0238 -0.0327 15 1 4.3641 9.0521 -1.2573 16 1 3.9868 8.1799 0.9735 17 6 2.8631 3.7314 -1.7007 18 6 4.2151 3.6788 -2.4166 19 6 4.6487 2.6959 2.3626 20 6 3.7949 2.8246 3.6262 21 6 2.8862 1.5983 3.7492 22 6 2.0200 1.4865 2.4916 23 6 1.1236 2.7211 2.3774 24 6 1.1513 0.2300 2.5797 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3553 2.1336 -0.0171 29 1 2.7029 1.3556 -0.8814 30 1 5.6190 2.6626 0.1856 31 1 4.3600 1.6956 -0.6193 32 1 3.5547 7.0586 -2.7186 33 1 2.2930 2.8048 -1.6334 34 1 2.2720 4.6409 -1.8079 35 1 4.5129 4.5537 -2.9945 36 1 4.5347 2.7179 -2.8200 37 1 5.2866 3.5743 2.2643 38 1 5.2692 1.8025 2.4329 39 1 3.1842 3.7251 3.5626 40 1 4.4443 2.8854 4.4995 41 1 2.2455 1.7062 4.6244 42 1 3.4967 0.7013 3.8519 43 1 0.5096 2.6426 1.4801 44 1 0.4787 2.7844 3.2539 45 1 1.7433 3.6157 2.3164 46 1 1.6853 -0.6124 2.1398 47 1 0.9300 0.0139 3.6248 48 1 0.2202 0.3932 2.0372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654317318.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:42 Heat of formation + Delta-G solvation = 46.873709 kcal Electronic energy + Delta-G solvation = -24026.353367 eV Core-core repulsion = 21082.433811 eV Total energy + Delta-G solvation = -2943.919556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27662 -38.38674 -36.33622 -35.17061 -33.38187 -32.32756 -29.55646 -28.01922 -27.80989 -27.00849 -26.01254 -23.10340 -22.46708 -22.13223 -20.77584 -20.31964 -19.07923 -17.91344 -16.95280 -16.59775 -16.32257 -16.03551 -15.58934 -15.17751 -14.88657 -14.78894 -14.30781 -14.12934 -13.88479 -13.48956 -13.40228 -12.93264 -12.89621 -12.82575 -12.75167 -12.58585 -12.42831 -12.23206 -12.15518 -12.00222 -11.79485 -11.71436 -11.52909 -11.30192 -11.16776 -11.12607 -11.01711 -10.61465 -10.11277 -9.89367 -9.57275 -8.80740 -7.89593 -5.99401 1.42469 1.43515 1.50320 1.51554 2.47554 2.99474 3.26085 3.81263 3.89070 4.00560 4.12948 4.21494 4.30345 4.40187 4.44313 4.47923 4.54313 4.59956 4.67686 4.68095 4.74801 4.79211 4.88644 4.94521 4.99142 5.02110 5.06767 5.10136 5.12204 5.18402 5.22748 5.26766 5.32683 5.39551 5.41850 5.45503 5.54403 5.57110 5.64639 5.72833 5.79217 5.86141 6.05123 6.06417 6.31223 6.52438 6.53948 6.65838 7.03861 7.55810 9.02362 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.006692 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.099522 B = 4183.076867 C = 4914.901254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C -0.094 4.094 4 C 0.109 3.891 5 H 0.031 0.969 6 N -0.526 5.526 7 C 0.106 3.894 8 C 0.033 3.967 9 C -0.468 4.468 10 H 0.051 0.949 11 C 0.009 3.991 12 N -0.904 5.904 13 Si 0.948 3.052 14 H -0.274 1.274 15 H -0.289 1.289 16 H -0.277 1.277 17 C -0.177 4.177 18 C -0.206 4.206 19 C 0.062 3.938 20 C -0.114 4.114 21 C -0.103 4.103 22 C -0.050 4.050 23 C -0.128 4.128 24 C -0.141 4.141 25 H 0.087 0.913 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.252 0.748 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 -13.234 10.236 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.162 4.162 3 C -0.131 4.131 4 C 0.000 4.000 5 H 0.049 0.951 6 N -0.250 5.250 7 C -0.022 4.022 8 C 0.032 3.968 9 C -0.506 4.506 10 H 0.069 0.931 11 C -0.189 4.189 12 N -0.543 5.543 13 Si 0.775 3.225 14 H -0.199 1.199 15 H -0.215 1.215 16 H -0.203 1.203 17 C -0.215 4.215 18 C -0.244 4.244 19 C -0.066 4.066 20 C -0.152 4.152 21 C -0.140 4.140 22 C -0.050 4.050 23 C -0.185 4.185 24 C -0.199 4.199 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.512 -12.683 10.112 16.836 hybrid contribution 0.879 0.806 -0.310 1.232 sum -3.633 -11.877 9.802 15.822 Atomic orbital electron populations 1.23796 0.95586 1.02062 1.01566 1.22806 0.96330 0.97489 0.99564 1.21138 0.98853 0.96003 0.97132 1.21659 0.93468 0.89821 0.95003 0.95081 1.61631 1.23099 1.39225 1.01058 1.21511 0.94695 0.95620 0.90330 1.18960 0.96974 0.93165 0.87727 1.20778 1.37741 0.90536 1.01527 0.93068 1.25651 0.95836 1.01959 0.95469 1.70164 1.44284 1.27612 1.12284 0.85776 0.78535 0.80209 0.77990 1.19930 1.21527 1.20264 1.22690 0.91294 0.99090 1.08431 1.22901 1.03183 0.98915 0.99447 1.22105 0.94354 0.99374 0.90801 1.21601 0.98340 0.99090 0.96150 1.21665 0.97692 0.97503 0.97167 1.20505 0.94848 0.96118 0.93534 1.21798 0.98561 0.97887 1.00291 1.22418 0.99703 0.95911 1.01828 0.89459 0.86730 0.86610 0.91770 0.91914 0.94301 0.93465 0.93815 0.90532 0.92280 0.89495 0.92715 0.92716 0.95237 0.92420 0.90459 0.90743 0.91780 0.93794 0.92714 0.93502 0.92199 0.92426 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.11 11.60 67.78 0.79 -3.32 16 2 C -0.14 -3.40 6.44 25.65 0.17 -3.24 16 3 C -0.09 -2.90 3.31 29.85 0.10 -2.80 16 4 C 0.11 3.25 1.05 44.93 0.05 3.29 16 5 H 0.03 0.91 8.09 -2.38 -0.02 0.89 16 6 N -0.53 -19.02 3.56 -871.10 -3.11 -22.12 16 7 C 0.11 4.33 4.66 86.31 0.40 4.73 16 8 C 0.03 1.63 2.28 -52.93 -0.12 1.50 16 9 C -0.47 -25.81 9.13 25.60 0.23 -25.58 16 10 H 0.05 2.81 7.48 -2.91 -0.02 2.79 16 11 C 0.01 0.48 5.28 84.66 0.45 0.93 16 12 N -0.90 -52.33 8.60 21.45 0.18 -52.14 16 13 Si 0.95 44.75 29.54 68.60 2.03 46.78 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 C -0.18 -8.88 8.90 30.62 0.27 -8.61 16 18 C -0.21 -10.48 9.33 30.62 0.29 -10.19 16 19 C 0.06 1.99 5.13 86.32 0.44 2.43 16 20 C -0.11 -3.07 5.74 30.65 0.18 -2.90 16 21 C -0.10 -2.37 4.61 30.67 0.14 -2.23 16 22 C -0.05 -1.26 0.54 -52.13 -0.03 -1.29 16 23 C -0.13 -3.74 7.51 71.98 0.54 -3.20 16 24 C -0.14 -2.92 7.30 71.98 0.53 -2.39 16 25 H 0.09 2.02 7.83 -2.91 -0.02 2.00 16 26 H 0.11 1.91 8.06 -2.91 -0.02 1.88 16 27 H 0.12 2.39 7.95 -2.91 -0.02 2.37 16 28 H 0.06 2.25 5.14 -2.39 -0.01 2.24 16 29 H 0.06 2.20 4.27 -2.39 -0.01 2.19 16 30 H 0.04 1.59 7.53 -2.39 -0.02 1.58 16 31 H 0.05 1.81 5.79 -2.38 -0.01 1.79 16 32 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.08 3.42 4.35 -2.39 -0.01 3.41 16 34 H 0.06 3.39 6.61 -2.38 -0.02 3.37 16 35 H 0.09 4.99 5.96 -2.39 -0.01 4.97 16 36 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.05 1.99 7.78 -2.39 -0.02 1.97 16 38 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.06 1.77 6.58 -2.39 -0.02 1.76 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.34 6.25 -2.38 -0.01 1.32 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.05 1.66 6.01 -2.39 -0.01 1.64 16 46 H 0.06 1.18 6.37 -2.38 -0.02 1.17 16 47 H 0.06 1.03 7.84 -2.39 -0.02 1.01 16 48 H 0.07 1.44 4.85 -2.39 -0.01 1.43 16 Total: -1.00 -59.26 337.73 4.44 -54.82 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.92 Total: 25.53 kcal Atomic # 6 Polarization: -57.28 SS G_CDS: 4.42 Total: -52.86 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -2.92 Total: -74.27 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -59.26 4.44 -54.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654317318.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.696 kcal (2) G-P(sol) polarization free energy of solvation -59.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds