Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00027 * 2 1 4 4 H 1.48499 * 109.47184 * 275.00047 * 3 2 1 5 5 H 1.48493 * 109.46900 * 34.99966 * 3 2 1 6 6 H 1.48499 * 109.46989 * 155.00232 * 3 2 1 7 7 C 1.37875 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00249 * 171.50301 * 7 2 1 9 9 C 1.50704 * 119.99757 * 351.49604 * 7 2 1 10 10 C 1.52997 * 115.55136 * 324.28417 * 9 7 2 11 11 N 1.46898 * 109.47298 * 305.98073 * 10 9 7 12 12 C 1.46846 * 111.00241 * 306.58620 * 11 10 9 13 13 C 1.53039 * 109.52182 * 174.15807 * 12 11 10 14 14 C 1.53118 * 109.27734 * 59.18379 * 13 12 11 15 15 C 1.53118 * 109.15935 * 302.34090 * 14 13 12 16 16 H 1.09004 * 109.50224 * 297.71712 * 15 14 13 17 17 C 1.53000 * 109.50581 * 177.60030 * 15 14 13 18 18 C 1.54262 * 110.03396 * 177.36434 * 17 15 14 19 19 C 1.54889 * 104.19713 * 217.10042 * 18 17 15 20 20 C 1.54894 * 102.74658 * 37.94079 * 19 18 17 21 21 C 1.53868 * 110.03266 * 60.19170 * 17 15 14 22 22 C 1.46844 * 110.99838 * 182.37202 * 11 10 9 23 23 C 1.53004 * 117.49598 * 109.96067 * 9 7 2 24 24 C 1.53004 * 117.49402 * 178.61702 * 9 7 2 25 25 H 0.97003 * 120.00056 * 5.00064 * 1 2 3 26 26 H 1.08999 * 109.46752 * 185.98054 * 10 9 7 27 27 H 1.08996 * 109.47110 * 65.98524 * 10 9 7 28 28 H 1.08997 * 109.45930 * 294.17938 * 12 11 10 29 29 H 1.08997 * 109.46062 * 54.14505 * 12 11 10 30 30 H 1.08998 * 109.49678 * 179.12074 * 13 12 11 31 31 H 1.08998 * 109.50270 * 299.19782 * 13 12 11 32 32 H 1.08995 * 109.51908 * 182.43921 * 14 13 12 33 33 H 1.08998 * 109.52508 * 62.24669 * 14 13 12 34 34 H 1.09008 * 110.01520 * 298.80165 * 17 15 14 35 35 H 1.08996 * 110.48753 * 335.78140 * 18 17 15 36 36 H 1.09009 * 110.48827 * 98.42461 * 18 17 15 37 37 H 1.09003 * 110.75900 * 279.63044 * 19 18 17 38 38 H 1.08998 * 110.91606 * 156.32732 * 19 18 17 39 39 H 1.08998 * 110.48816 * 203.37443 * 20 19 18 40 40 H 1.09006 * 110.59431 * 80.78992 * 20 19 18 41 41 H 1.08999 * 110.03362 * 238.57167 * 21 17 15 42 42 H 1.09001 * 110.03228 * 359.95846 * 21 17 15 43 43 H 1.09007 * 109.46267 * 65.82929 * 22 11 10 44 44 H 1.09000 * 109.46732 * 305.85947 * 22 11 10 45 45 H 1.08998 * 117.49283 * 215.00579 * 23 9 7 46 46 H 1.08996 * 117.49754 * 0.02562 * 23 9 7 47 47 H 1.09003 * 117.50245 * 359.97438 * 24 9 7 48 48 H 1.08996 * 117.49569 * 144.98161 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3910 2.1075 -1.3947 5 1 1.5034 2.6198 0.8030 6 1 3.5956 1.4120 0.5916 7 6 2.0045 -1.1940 -0.0005 8 1 3.0756 -1.1991 -0.1387 9 6 1.2634 -2.4920 0.1919 10 6 0.0768 -2.4378 1.1562 11 7 0.5189 -1.8918 2.4464 12 6 1.6735 -2.6363 2.9651 13 6 2.1956 -1.9532 4.2311 14 6 1.0800 -1.9100 5.2789 15 6 -0.1282 -1.1715 4.6964 16 1 0.1504 -0.1432 4.4656 17 6 -1.2695 -1.1757 5.7154 18 6 -2.4705 -0.3778 5.1672 19 6 -3.0459 0.3448 6.4105 20 6 -1.7714 0.7344 7.1997 21 6 -0.8249 -0.4686 7.0077 22 6 -0.5830 -1.8771 3.4169 23 6 1.1517 -3.4272 -1.0140 24 6 2.0804 -3.7850 0.1491 25 1 -0.4850 0.8369 -0.0732 26 1 -0.3181 -3.4430 1.3032 27 1 -0.7016 -1.7991 0.7389 28 1 1.3714 -3.6566 3.2011 29 1 2.4611 -2.6559 2.2118 30 1 3.0429 -2.5149 4.6245 31 1 2.5114 -0.9376 3.9927 32 1 1.4341 -1.3857 6.1665 33 1 0.7915 -2.9266 5.5460 34 1 -1.5700 -2.2003 5.9348 35 1 -2.1393 0.3473 4.4238 36 1 -3.2132 -1.0516 4.7398 37 1 -3.6708 -0.3305 6.9950 38 1 -3.6067 1.2330 6.1195 39 1 -2.0038 0.8724 8.2556 40 1 -1.3263 1.6397 6.7866 41 1 -0.9104 -1.1497 7.8544 42 1 0.2041 -0.1231 6.9092 43 1 -0.8746 -2.9011 3.6509 44 1 -1.4344 -1.3454 2.9918 45 1 0.2327 -4.0036 -1.1203 46 1 1.6145 -3.1037 -1.9462 47 1 3.1538 -3.6968 -0.0187 48 1 1.7727 -4.5968 0.8081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655883923.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = 4.529898 kcal Electronic energy + Delta-G solvation = -23343.394948 eV Core-core repulsion = 20397.639227 eV Total energy + Delta-G solvation = -2945.755721 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.31332 -37.56358 -35.83740 -32.38045 -31.92430 -30.99052 -28.63426 -26.92597 -25.87952 -25.12543 -22.35049 -22.13111 -21.03158 -20.32050 -19.44052 -19.05965 -18.67692 -16.19573 -15.60308 -15.24872 -14.60821 -14.49599 -14.02815 -13.68543 -13.54868 -13.47480 -13.18433 -12.80590 -12.61270 -12.45855 -11.96454 -11.44375 -11.24467 -11.14271 -11.00761 -10.95363 -10.86506 -10.70692 -10.63708 -10.51676 -10.47286 -10.37547 -10.26709 -10.06000 -9.92118 -9.69544 -9.55307 -9.12138 -8.88738 -8.50544 -7.91609 -7.01853 -5.82045 -3.86212 3.37535 3.45620 3.49510 4.52206 4.65321 4.73946 4.76648 4.97945 5.21724 5.33477 5.42475 5.43921 5.55061 5.63799 5.70050 5.74018 5.74734 5.79915 5.87565 5.96489 5.99067 6.05230 6.11080 6.15974 6.19003 6.23376 6.29754 6.32895 6.38136 6.42232 6.46242 6.47379 6.56195 6.66279 6.68198 6.75337 6.79883 6.83803 6.94444 7.01645 7.03754 7.29742 7.40945 7.71754 8.12373 8.32703 8.39052 8.63848 9.07198 9.73996 11.18946 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.005953 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.292853 B = 4702.189441 C = 5286.936644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.092 3.908 3 Si 0.888 3.112 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.479 4.479 8 H 0.053 0.947 9 C 0.066 3.934 10 C 0.106 3.894 11 N -0.496 5.496 12 C 0.059 3.941 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.074 4.074 16 H 0.077 0.923 17 C -0.084 4.084 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.120 4.120 22 C 0.068 3.932 23 C -0.207 4.207 24 C -0.220 4.220 25 H 0.256 0.744 26 H -0.020 1.020 27 H 0.116 0.884 28 H 0.005 0.995 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.010 0.990 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.490 -1.571 12.447 13.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.112 4.112 3 Si 0.716 3.284 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.066 3.934 10 C -0.021 4.021 11 N -0.219 5.219 12 C -0.069 4.069 13 C -0.154 4.154 14 C -0.150 4.150 15 C -0.093 4.093 16 H 0.096 0.904 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.157 4.157 22 C -0.061 4.061 23 C -0.246 4.246 24 C -0.257 4.257 25 H 0.066 0.934 26 H -0.002 1.002 27 H 0.134 0.866 28 H 0.023 0.977 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.028 0.972 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.504 -0.949 12.438 12.957 hybrid contribution 0.242 -0.161 0.057 0.296 sum -3.262 -1.110 12.495 12.961 Atomic orbital electron populations 1.69770 1.05938 1.25998 1.48981 1.24710 0.94508 0.98300 0.93636 0.86665 0.80161 0.84119 0.77414 1.21373 1.21237 1.20029 1.20249 0.92772 0.88864 1.49678 0.92916 1.18975 0.93535 0.88511 0.92416 1.21753 0.98906 0.93797 0.87680 1.61630 1.04660 1.53685 1.01950 1.22096 0.95883 0.92630 0.96322 1.21584 0.96727 1.01778 0.95301 1.21649 0.95982 0.99495 0.97832 1.21262 0.93667 1.00606 0.93774 0.90439 1.21776 0.95179 0.98830 0.94547 1.22447 0.96874 0.99074 0.97337 1.22491 0.97035 0.99801 0.96942 1.22356 0.96019 0.98416 0.99428 1.22236 0.99602 0.96769 0.97139 1.21999 0.94866 0.96921 0.92293 1.22988 0.99332 1.07769 0.94522 1.22976 0.96830 1.02442 1.03448 0.93358 1.00235 0.86622 0.97680 0.89011 0.92913 0.91249 0.92638 0.93145 0.91739 0.90892 0.91983 0.92043 0.91981 0.92362 0.91752 0.92484 0.91429 0.97216 0.91239 0.92092 0.90517 0.90896 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.63 10.69 55.43 0.59 -23.04 16 2 C 0.09 2.47 5.19 -17.82 -0.09 2.38 16 3 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.48 -12.83 8.31 -34.44 -0.29 -13.12 16 8 H 0.05 1.44 7.83 -52.49 -0.41 1.03 16 9 C 0.07 1.63 1.08 -155.66 -0.17 1.46 16 10 C 0.11 2.49 4.17 -3.83 -0.02 2.48 16 11 N -0.50 -10.72 4.34 -234.67 -1.02 -11.74 16 12 C 0.06 1.17 4.80 -3.83 -0.02 1.15 16 13 C -0.12 -1.97 6.09 -26.65 -0.16 -2.14 16 14 C -0.11 -1.67 4.98 -26.61 -0.13 -1.81 16 15 C -0.07 -1.17 1.63 -90.54 -0.15 -1.32 16 16 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 17 C -0.08 -1.11 2.51 -89.51 -0.22 -1.33 16 18 C -0.12 -1.55 5.34 -25.07 -0.13 -1.68 16 19 C -0.13 -1.37 6.91 -24.74 -0.17 -1.55 16 20 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 21 C -0.12 -1.39 5.94 -25.61 -0.15 -1.54 16 22 C 0.07 1.26 4.53 -3.83 -0.02 1.24 16 23 C -0.21 -4.78 9.96 -26.69 -0.27 -5.04 16 24 C -0.22 -4.82 8.16 -26.69 -0.22 -5.04 16 25 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 26 H -0.02 -0.47 8.09 -51.93 -0.42 -0.89 16 27 H 0.12 3.02 5.99 -51.93 -0.31 2.71 16 28 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.09 2.01 5.36 -51.93 -0.28 1.74 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.05 0.74 6.57 -51.93 -0.34 0.40 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.07 1.06 7.75 -51.93 -0.40 0.66 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 43 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.07 1.35 7.28 -51.93 -0.38 0.97 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 47 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 48 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -26.52 354.26 -11.68 -38.20 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -9.19 Total: 2.35 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -2.38 Total: -27.38 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.43 Total: -34.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.52 -11.68 -38.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655883923.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.726 kcal (2) G-P(sol) polarization free energy of solvation -26.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds