Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34950 * 126.03845 * 2 1 4 4 C 1.35312 * 107.75113 * 180.15053 * 3 2 1 5 5 C 1.50697 * 126.04500 * 179.87016 * 4 3 2 6 6 H 1.08998 * 115.56356 * 334.03252 * 5 4 3 7 7 C 1.53004 * 117.50030 * 188.33245 * 5 4 3 8 8 C 1.53004 * 60.00329 * 252.51792 * 7 5 4 9 9 H 1.08992 * 117.51773 * 107.48034 * 8 7 5 10 10 C 1.53002 * 117.49559 * 252.51315 * 8 7 5 11 11 N 1.46897 * 109.47010 * 243.62155 * 10 8 7 12 12 C 1.46893 * 111.00104 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47285 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47200 * 59.99494 * 13 12 11 15 15 C 1.53005 * 109.46471 * 299.99467 * 13 12 11 16 16 C 1.50701 * 109.47211 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99761 * 359.97438 * 16 13 12 18 18 C 1.37871 * 119.99694 * 180.27574 * 16 13 12 19 19 N 1.31514 * 120.00482 * 359.71466 * 18 16 13 20 20 Si 1.86801 * 119.99746 * 179.72062 * 18 16 13 21 21 H 1.48504 * 109.47266 * 60.00049 * 20 18 16 22 22 H 1.48504 * 109.46970 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47383 * 299.99456 * 20 18 16 24 24 C 1.39879 * 107.91475 * 359.61291 * 4 3 2 25 25 N 1.30834 * 108.20339 * 0.24259 * 24 4 3 26 26 H 1.09005 * 109.47065 * 270.25562 * 1 2 3 27 27 H 1.08997 * 109.47169 * 30.25457 * 1 2 3 28 28 H 1.09003 * 109.47236 * 150.25796 * 1 2 3 29 29 H 1.08005 * 126.12599 * 0.02562 * 3 2 1 30 30 H 1.09000 * 117.49245 * 145.02109 * 7 5 4 31 31 H 1.08996 * 117.49675 * 0.02562 * 7 5 4 32 32 H 1.09000 * 109.46515 * 123.62403 * 10 8 7 33 33 H 1.09001 * 109.47055 * 3.62445 * 10 8 7 34 34 H 1.00904 * 111.00030 * 56.04574 * 11 10 8 35 35 H 1.09000 * 109.47823 * 59.99694 * 12 11 10 36 36 H 1.09007 * 109.47029 * 299.99462 * 12 11 10 37 37 H 1.09004 * 109.46783 * 180.02562 * 14 13 12 38 38 H 1.09005 * 109.46870 * 300.00189 * 14 13 12 39 39 H 1.08998 * 109.47156 * 60.00128 * 14 13 12 40 40 H 1.08995 * 109.47438 * 299.99599 * 15 13 12 41 41 H 1.08996 * 109.47069 * 60.00459 * 15 13 12 42 42 H 1.09004 * 109.46658 * 179.97438 * 15 13 12 43 43 H 0.96995 * 120.00207 * 179.97438 * 19 18 16 44 44 H 1.07999 * 125.89448 * 180.26636 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 4.7680 1.5453 -0.0074 6 1 4.6334 2.5375 -0.4381 7 6 6.1244 0.8662 -0.2075 8 6 5.7375 1.4114 1.1688 9 1 5.4895 0.6880 1.9454 10 6 6.4439 2.6804 1.6500 11 7 7.2334 2.3759 2.8507 12 6 7.9269 3.5738 3.3426 13 6 8.7373 3.2176 4.5906 14 6 9.7659 2.1405 4.2405 15 6 7.7966 2.6910 5.6763 16 6 9.4492 4.4465 5.0948 17 1 9.3353 5.3872 4.5767 18 6 10.2507 4.3683 6.2139 19 7 10.3896 3.2226 6.8446 20 14 11.1394 5.8897 6.8344 21 1 10.1452 6.9381 7.1777 22 1 11.9297 5.5429 8.0429 23 1 12.0492 6.3976 5.7764 24 6 3.5346 -0.7321 0.0035 25 7 2.2891 -1.1327 0.0054 26 1 -0.3633 0.0046 1.0277 27 1 -0.3633 0.8877 -0.5178 28 1 -0.3634 -0.8923 -0.5098 29 1 1.9281 2.1194 0.0004 30 1 6.8820 1.4117 -0.7701 31 1 6.1311 -0.2160 -0.3367 32 1 5.7009 3.4419 1.8872 33 1 7.1040 3.0488 0.8648 34 1 7.8861 1.6268 2.6740 35 1 7.1942 4.3414 3.5916 36 1 8.5974 3.9487 2.5693 37 1 10.3429 1.8865 5.1298 38 1 9.2512 1.2516 3.8756 39 1 10.4360 2.5156 3.4670 40 1 7.0638 3.4584 5.9257 41 1 7.2820 1.8022 5.3114 42 1 8.3740 2.4369 6.5652 43 1 10.9538 3.1675 7.6317 44 1 4.4054 -1.3709 0.0069 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658310113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = 97.531282 kcal Electronic energy + Delta-G solvation = -20936.468356 eV Core-core repulsion = 17891.205134 eV Total energy + Delta-G solvation = -3045.263222 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37392 -37.98038 -36.45485 -33.68724 -33.01948 -30.88629 -30.12598 -27.16902 -25.86198 -25.50487 -25.13140 -23.03466 -22.86653 -21.14088 -20.46948 -19.79226 -18.33241 -17.07101 -16.01091 -15.62256 -15.48013 -14.68714 -14.58470 -14.40222 -14.25395 -13.65080 -13.23846 -13.04401 -12.92210 -12.65743 -12.42853 -12.28506 -11.91421 -11.82535 -11.25774 -11.03854 -10.97225 -10.80942 -10.62822 -10.53282 -10.42633 -10.15160 -10.02447 -9.86997 -9.57731 -9.32809 -9.03319 -8.58376 -8.26892 -8.25064 -7.62472 -5.87350 -3.97781 1.71383 2.34136 2.59170 3.34927 3.39679 3.42206 4.01290 4.25692 4.46298 4.62381 4.69590 4.83427 4.90244 4.96786 5.07291 5.10699 5.27572 5.37804 5.41641 5.53062 5.62531 5.84464 5.88052 5.99119 6.06334 6.21279 6.39885 6.44380 6.48950 6.52919 6.77424 6.81945 6.94793 7.13632 7.22303 7.44075 7.53111 7.53375 7.80296 7.80564 7.89021 8.06564 8.26670 8.39578 8.60355 9.03675 9.66940 11.13128 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.037126 B = 0.002718 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.017459 B =10299.403771 C =10406.135261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.056 3.944 4 C -0.196 4.196 5 C -0.075 4.075 6 H 0.107 0.893 7 C -0.175 4.175 8 C -0.131 4.131 9 H 0.112 0.888 10 C 0.089 3.911 11 N -0.685 5.685 12 C 0.075 3.925 13 C 0.069 3.931 14 C -0.133 4.133 15 C -0.119 4.119 16 C -0.507 4.507 17 H 0.051 0.949 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.054 3.946 25 N -0.300 5.300 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.173 0.827 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.338 0.662 35 H 0.055 0.945 36 H 0.012 0.988 37 H 0.083 0.917 38 H 0.011 0.989 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.258 0.742 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.775 -5.165 -14.876 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.163 5.163 3 C -0.090 4.090 4 C -0.208 4.208 5 C -0.094 4.094 6 H 0.125 0.875 7 C -0.212 4.212 8 C -0.149 4.149 9 H 0.130 0.870 10 C -0.041 4.041 11 N -0.317 5.317 12 C -0.053 4.053 13 C 0.068 3.932 14 C -0.191 4.191 15 C -0.177 4.177 16 C -0.546 4.546 17 H 0.069 0.931 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.205 1.205 24 C -0.132 4.132 25 N -0.121 5.121 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.190 0.810 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.157 0.843 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.102 0.898 38 H 0.030 0.970 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.182 -6.170 -14.277 23.176 hybrid contribution 1.686 1.751 -0.324 2.452 sum -15.496 -4.419 -14.601 21.745 Atomic orbital electron populations 1.21826 0.74340 1.04301 1.03369 1.48408 1.06546 1.03879 1.57444 1.22224 0.90742 0.93321 1.02667 1.19352 0.93213 0.93207 1.14990 1.20253 0.87213 0.98337 1.03643 0.87529 1.23149 0.97246 1.00405 1.00386 1.22551 1.00984 1.00286 0.91124 0.87020 1.21487 0.96261 0.94782 0.91578 1.60560 1.30235 1.10525 1.30395 1.22140 0.95280 0.90379 0.97483 1.18084 0.91253 0.94107 0.89721 1.21839 0.99468 0.96490 1.01262 1.21637 0.97596 0.97161 1.01280 1.21085 1.27547 0.94883 1.11035 0.93094 1.24885 0.96489 0.95684 0.96535 1.69824 1.39037 1.23896 1.19631 0.86727 0.79783 0.83662 0.78164 1.20426 1.21379 1.20492 1.23756 0.95057 0.94651 0.99718 1.77340 1.01692 1.08332 1.24782 0.90784 0.89563 0.89430 0.80974 0.88795 0.88947 0.91352 0.95979 0.84295 0.92672 0.97006 0.89839 0.96960 0.96254 0.96359 0.96069 0.90810 0.93158 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.47 59.85 0.69 1.28 16 2 N -0.38 -3.90 4.01 -68.16 -0.27 -4.17 16 3 C 0.06 0.55 11.40 -17.22 -0.20 0.36 16 4 C -0.20 -2.20 5.76 -105.05 -0.61 -2.81 16 5 C -0.07 -0.81 5.97 -91.76 -0.55 -1.35 16 6 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 7 C -0.17 -1.86 9.67 -26.73 -0.26 -2.12 16 8 C -0.13 -1.65 5.65 -90.61 -0.51 -2.16 16 9 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 10 C 0.09 1.31 5.97 -3.82 -0.02 1.28 16 11 N -0.69 -12.43 5.71 -113.78 -0.65 -13.08 16 12 C 0.08 1.60 4.59 -3.83 -0.02 1.58 16 13 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 14 C -0.13 -3.18 7.92 37.16 0.29 -2.88 16 15 C -0.12 -2.96 8.10 37.16 0.30 -2.66 16 16 C -0.51 -13.79 8.01 -34.44 -0.28 -14.07 16 17 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 18 C 0.06 1.78 5.15 -17.82 -0.09 1.69 16 19 N -0.89 -24.76 9.35 55.43 0.52 -24.25 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.05 0.63 11.35 -17.36 -0.20 0.44 16 25 N -0.30 -3.80 12.58 30.63 0.39 -3.42 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 31 H 0.09 0.90 6.97 -51.93 -0.36 0.53 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.32 7.88 -51.93 -0.41 -0.09 16 34 H 0.34 6.08 6.77 -39.29 -0.27 5.81 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 2.21 6.06 -51.93 -0.31 1.90 16 38 H 0.01 0.25 6.57 -51.93 -0.34 -0.09 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 42 H 0.07 2.00 6.08 -51.93 -0.32 1.68 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 44 H 0.18 1.74 7.19 -52.49 -0.38 1.37 16 LS Contribution 352.78 15.07 5.32 5.32 Total: -1.00 -30.53 352.78 -8.65 -39.17 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.39 Total: 4.00 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -1.53 Total: -19.82 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.02 Total: -44.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.53 -8.65 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658310113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.704 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds