Wall clock time and date at job start Mon Mar 30 2020 02:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46908 * 110.99837 * 84.99962 * 12 2 1 14 14 C 1.50706 * 109.46935 * 180.02562 * 13 12 2 15 15 C 1.35314 * 126.03831 * 260.02100 * 14 13 12 16 16 N 1.34951 * 107.74508 * 179.97438 * 15 14 13 17 17 C 1.46497 * 126.03761 * 180.02562 * 16 15 14 18 18 N 1.40081 * 107.92464 * 0.02562 * 16 15 14 19 19 C 1.30844 * 108.20587 * 359.71359 * 18 16 15 20 20 C 1.50702 * 125.89905 * 180.26183 * 19 18 16 21 21 C 1.54266 * 110.03377 * 57.37463 * 20 19 18 22 22 C 1.54885 * 104.19693 * 217.10294 * 21 20 19 23 23 C 1.54890 * 102.74765 * 37.94549 * 22 21 20 24 24 C 1.53876 * 110.02981 * 300.21174 * 20 19 18 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.00898 * 111.00604 * 208.95432 * 12 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 13 12 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 13 12 2 32 32 H 1.08003 * 126.12879 * 359.97438 * 15 14 13 33 33 H 1.08998 * 109.46955 * 90.00028 * 17 16 15 34 34 H 1.09000 * 109.46860 * 210.00650 * 17 16 15 35 35 H 1.09002 * 109.47191 * 330.00095 * 17 16 15 36 36 H 1.09003 * 110.01429 * 178.82356 * 20 19 18 37 37 H 1.08994 * 110.48459 * 335.78833 * 21 20 19 38 38 H 1.09002 * 110.47813 * 98.43166 * 21 20 19 39 39 H 1.08997 * 110.75954 * 279.63500 * 22 21 20 40 40 H 1.09001 * 110.75430 * 156.25844 * 22 21 20 41 41 H 1.08993 * 110.49122 * 203.37592 * 23 22 21 42 42 H 1.09006 * 110.60042 * 80.78778 * 23 22 21 43 43 H 1.09007 * 110.03349 * 238.57059 * 24 20 19 44 44 H 1.08998 * 110.03690 * 359.94998 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 2.0825 0.2226 -2.3468 14 6 2.5875 -0.5219 -3.5560 15 6 3.8527 -0.4968 -4.0353 16 7 3.8956 -1.2921 -5.1247 17 6 5.0740 -1.5540 -5.9546 18 7 2.6144 -1.8231 -5.3216 19 6 1.8326 -1.3653 -4.3775 20 6 0.3705 -1.6881 -4.2071 21 6 0.1778 -3.2130 -4.0751 22 6 -1.1420 -3.4962 -4.8347 23 6 -1.0570 -2.5277 -6.0405 24 6 -0.4146 -1.2524 -5.4568 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7081 1.1610 3.4844 29 1 2.9173 -1.1205 -1.0286 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 4.6799 0.0600 -3.6204 33 1 5.6072 -2.4213 -5.5652 34 1 4.7600 -1.7506 -6.9797 35 1 5.7317 -0.6849 -5.9365 36 1 -0.0226 -1.1834 -3.3245 37 1 1.0077 -3.7441 -4.5411 38 1 0.0828 -3.4960 -3.0268 39 1 -2.0046 -3.2618 -4.2111 40 1 -1.1784 -4.5318 -5.1729 41 1 -2.0529 -2.3107 -6.4265 42 1 -0.4275 -2.9469 -6.8255 43 1 -1.1892 -0.5370 -5.1805 44 1 0.2618 -0.8067 -6.1861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:48 Heat of formation + Delta-G solvation = 59.153576 kcal Electronic energy + Delta-G solvation = -21957.584436 eV Core-core repulsion = 18910.657032 eV Total energy + Delta-G solvation = -3046.927404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06549 -37.71386 -35.87598 -33.41372 -32.39211 -30.43638 -29.18085 -28.46044 -27.95036 -25.96712 -25.13272 -23.40284 -21.40379 -20.46810 -19.98732 -19.64255 -18.53587 -16.85731 -16.08909 -15.50863 -15.28667 -14.98068 -14.76760 -14.05977 -13.65218 -13.49581 -13.25042 -13.14788 -13.00597 -12.65029 -12.54311 -12.07250 -11.63123 -11.21146 -11.13655 -11.00297 -10.95022 -10.83448 -10.75399 -10.74327 -10.48003 -10.42656 -10.25439 -10.05515 -10.03086 -9.82908 -8.89699 -8.78979 -8.42768 -8.03236 -7.12817 -5.98043 -4.04070 2.12065 2.70146 3.07031 3.33440 3.37896 3.40999 4.44087 4.55875 4.84632 4.87856 4.89468 5.06862 5.09631 5.29452 5.32769 5.33309 5.55585 5.65302 5.68024 5.75493 5.78811 5.84502 5.88480 6.01565 6.07289 6.16518 6.17680 6.26457 6.41677 6.48359 6.50926 6.60376 6.70913 6.95667 7.01364 7.21018 7.25193 7.31340 7.58885 7.83309 7.97196 8.03192 8.34470 8.49630 8.76464 9.07807 9.61700 11.08073 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.004678 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.969892 B = 5984.488214 C = 6949.978877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.681 5.681 13 C 0.136 3.864 14 C -0.213 4.213 15 C 0.047 3.953 16 N -0.386 5.386 17 C 0.108 3.892 18 N -0.302 5.302 19 C 0.109 3.891 20 C -0.009 4.009 21 C -0.110 4.110 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.114 4.114 25 H 0.031 0.969 26 H 0.004 0.996 27 H 0.079 0.921 28 H 0.261 0.739 29 H 0.329 0.671 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.167 0.833 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -3.607 -17.044 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.312 5.312 13 C 0.005 3.995 14 C -0.224 4.224 15 C -0.099 4.099 16 N -0.168 5.168 17 C -0.034 4.034 18 N -0.124 5.124 19 C -0.058 4.058 20 C -0.030 4.030 21 C -0.148 4.148 22 C -0.162 4.162 23 C -0.158 4.158 24 C -0.153 4.153 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.185 0.815 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.081 -4.473 -18.188 18.845 hybrid contribution 1.358 0.688 1.844 2.391 sum 3.439 -3.785 -16.345 17.126 Atomic orbital electron populations 1.21700 0.97919 0.99277 0.99233 1.19096 0.92599 0.92238 0.85670 0.98335 1.21234 1.31318 1.12385 0.90508 0.92401 1.24901 0.95110 0.94997 0.98939 1.69888 1.36670 1.22934 1.23449 0.86615 0.79012 0.79835 0.82234 1.20435 1.21350 1.20238 1.60737 1.32078 1.32919 1.05466 1.20135 0.99095 0.92385 0.87878 1.20181 0.92857 1.07115 1.02268 1.22287 0.99105 0.97814 0.90682 1.48250 1.08380 1.37277 1.22939 1.21712 0.84183 1.02179 0.95294 1.77193 0.88534 1.22540 1.24124 1.22033 0.96175 0.95202 0.92391 1.20252 0.86717 0.96948 0.99036 1.22366 0.97179 0.94359 1.00921 1.22499 0.98092 0.98793 0.96808 1.22321 0.99894 0.95802 0.97804 1.22200 0.98819 0.97609 0.96654 0.94990 0.97712 0.90282 0.92954 0.85442 0.91298 0.96072 0.81533 0.91245 0.89808 0.89962 0.88188 0.91554 0.90907 0.91399 0.91958 0.92157 0.91903 0.91704 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.21 5.35 2.60 -68.87 -0.18 5.17 16 3 H 0.00 -0.03 7.80 -51.93 -0.40 -0.43 16 4 C -0.52 -14.17 8.59 -34.44 -0.30 -14.46 16 5 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.63 6.29 -109.21 -0.69 -15.32 16 13 C 0.14 2.52 5.44 -4.97 -0.03 2.49 16 14 C -0.21 -3.56 5.61 -105.05 -0.59 -4.15 16 15 C 0.05 0.67 11.40 -17.22 -0.20 0.48 16 16 N -0.39 -5.34 4.01 -68.16 -0.27 -5.61 16 17 C 0.11 0.95 11.47 59.85 0.69 1.63 16 18 N -0.30 -4.87 12.32 33.67 0.41 -4.45 16 19 C 0.11 1.79 5.45 -82.40 -0.45 1.34 16 20 C -0.01 -0.14 3.34 -90.65 -0.30 -0.44 16 21 C -0.11 -1.58 6.35 -25.07 -0.16 -1.74 16 22 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 16 23 C -0.12 -1.38 6.83 -25.07 -0.17 -1.56 16 24 C -0.11 -1.49 6.45 -25.61 -0.17 -1.66 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 27 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.33 7.10 8.22 -39.29 -0.32 6.78 16 30 H 0.07 1.30 7.03 -51.93 -0.37 0.94 16 31 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 32 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 1.68 7.25 -51.93 -0.38 1.30 16 37 H 0.07 1.00 7.66 -51.93 -0.40 0.61 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -30.42 352.32 -8.97 -39.39 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.57 Total: 4.83 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.77 Total: -15.63 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.08 Total: -50.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.42 -8.97 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.544 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds