Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29438 * 117.96646 * 2 1 4 4 C 1.50704 * 117.96236 * 359.53674 * 3 2 1 5 5 C 1.50165 * 124.15060 * 179.73966 * 3 2 1 6 6 C 1.53032 * 110.09547 * 16.71685 * 5 3 2 7 7 H 1.09005 * 109.63687 * 70.67727 * 6 5 3 8 8 C 1.52997 * 109.64305 * 191.09743 * 6 5 3 9 9 H 1.08996 * 109.47387 * 59.57880 * 8 6 5 10 10 C 1.53003 * 109.47067 * 179.58179 * 8 6 5 11 11 N 1.46899 * 109.46931 * 299.57844 * 8 6 5 12 12 C 1.46905 * 111.00074 * 155.00215 * 11 8 6 13 13 C 1.52996 * 109.47579 * 184.10268 * 12 11 8 14 14 C 1.50697 * 115.55155 * 65.28103 * 13 12 11 15 15 H 1.07993 * 120.00432 * 273.40190 * 14 13 12 16 16 C 1.37878 * 119.99613 * 93.40011 * 14 13 12 17 17 N 1.31517 * 120.00051 * 4.50821 * 16 14 13 18 18 Si 1.86805 * 120.00088 * 184.51209 * 16 14 13 19 19 H 1.48503 * 109.46808 * 89.99739 * 18 16 14 20 20 H 1.48496 * 109.47221 * 209.99710 * 18 16 14 21 21 H 1.48499 * 109.46990 * 330.00050 * 18 16 14 22 22 C 1.53002 * 117.49638 * 279.61923 * 13 12 11 23 23 C 1.52998 * 117.49830 * 210.95788 * 13 12 11 24 24 C 1.53390 * 108.61027 * 310.89010 * 6 5 3 25 25 C 1.50071 * 117.95933 * 179.97438 * 2 1 3 26 26 H 1.08990 * 109.47364 * 175.53073 * 1 2 3 27 27 H 1.09008 * 109.46743 * 295.53194 * 1 2 3 28 28 H 1.09005 * 109.47191 * 55.52872 * 1 2 3 29 29 H 1.08994 * 109.47021 * 5.12667 * 4 3 2 30 30 H 1.08997 * 109.47457 * 125.12934 * 4 3 2 31 31 H 1.09000 * 109.46703 * 245.13298 * 4 3 2 32 32 H 1.09003 * 109.20757 * 256.63998 * 5 3 2 33 33 H 1.08998 * 109.56092 * 137.02174 * 5 3 2 34 34 H 1.08992 * 109.47179 * 179.97438 * 10 8 6 35 35 H 1.08995 * 109.46655 * 300.00166 * 10 8 6 36 36 H 1.09004 * 109.46967 * 59.99749 * 10 8 6 37 37 H 1.00899 * 111.00522 * 31.04988 * 11 8 6 38 38 H 1.09005 * 109.46880 * 304.10233 * 12 11 8 39 39 H 1.09002 * 109.47185 * 64.09643 * 12 11 8 40 40 H 0.97004 * 119.99910 * 185.00384 * 17 16 14 41 41 H 1.09004 * 117.50143 * 359.97438 * 22 13 12 42 42 H 1.08996 * 117.50004 * 145.02288 * 22 13 12 43 43 H 1.09004 * 117.49512 * 214.97519 * 23 13 12 44 44 H 1.08999 * 117.49796 * 359.97335 * 23 13 12 45 45 H 1.09006 * 109.63915 * 187.01414 * 24 6 5 46 46 H 1.08997 * 109.64640 * 307.63907 * 24 6 5 47 47 H 1.09004 * 109.35457 * 76.95038 * 25 2 1 48 48 H 1.08990 * 109.25021 * 317.29274 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 1.2697 2.3915 -0.0108 5 6 3.6069 1.3050 0.0056 6 6 4.2795 -0.0076 -0.4022 7 1 4.1093 -0.1924 -1.4630 8 6 5.7826 0.0784 -0.1300 9 1 5.9497 0.2632 0.9312 10 6 6.4495 -1.2395 -0.5294 11 7 6.3604 1.1772 -0.9153 12 6 7.5895 1.6824 -0.2890 13 6 8.1047 2.8886 -1.0766 14 6 7.2146 4.1045 -1.0593 15 1 6.4201 4.2025 -1.7842 16 6 7.4146 5.0919 -0.1180 17 7 8.4356 5.0162 0.7076 18 14 6.2354 6.5370 -0.0152 19 1 5.1327 6.2102 0.9243 20 1 6.9630 7.7358 0.4734 21 1 5.6731 6.8137 -1.3614 22 6 8.8966 2.6110 -2.3560 23 6 9.6168 3.1203 -1.1049 24 6 3.6702 -1.1473 0.4240 25 6 2.2106 -1.3256 0.0006 26 1 -0.3633 -1.0244 -0.0801 27 1 -0.3633 0.4430 0.9274 28 1 -0.3634 0.5817 -0.8472 29 1 0.2178 2.1194 0.0746 30 1 1.5500 3.0270 0.8293 31 1 1.4309 2.9310 -0.9441 32 1 3.9338 1.5822 1.0079 33 1 3.8916 2.0899 -0.6951 34 1 7.5204 -1.1780 -0.3358 35 1 6.0208 -2.0547 0.0533 36 1 6.2824 -1.4242 -1.5906 37 1 5.6898 1.9197 -1.0461 38 1 7.3776 1.9822 0.7373 39 1 8.3463 0.8979 -0.2894 40 1 8.5358 5.6710 1.4163 41 1 9.0509 1.5690 -2.6364 42 1 8.7742 3.3081 -3.1849 43 1 9.9678 4.1523 -1.1114 44 1 10.2445 2.4136 -0.5620 45 1 4.2209 -2.0695 0.2382 46 1 3.7161 -0.8968 1.4838 47 1 2.1748 -1.7540 -1.0011 48 1 1.7112 -1.9971 0.6988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659044457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = 10.951911 kcal Electronic energy + Delta-G solvation = -22597.271627 eV Core-core repulsion = 19651.794385 eV Total energy + Delta-G solvation = -2945.477242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.49743 -37.10163 -35.65398 -32.82206 -31.84801 -31.36299 -29.49006 -27.32945 -25.77783 -25.61930 -24.31183 -22.76920 -21.51523 -20.80580 -19.66274 -18.91590 -16.84819 -15.98693 -15.47631 -14.83636 -14.68082 -14.60788 -14.51541 -13.90066 -13.74277 -13.42637 -13.17917 -13.02497 -12.62975 -12.41847 -12.26311 -11.84012 -11.81192 -11.69368 -11.61769 -11.56492 -11.19984 -11.11343 -10.98770 -10.83151 -10.77630 -10.49204 -10.32029 -10.10151 -9.98061 -9.74896 -9.19866 -8.87254 -8.39123 -8.29340 -7.99937 -7.45352 -5.99791 -4.07757 2.29471 3.27654 3.35806 3.38441 4.40826 4.67702 4.73356 4.82331 5.10407 5.16844 5.26995 5.31495 5.37260 5.39737 5.48176 5.61333 5.62034 5.67531 5.70851 5.79790 5.84597 5.85340 5.94202 5.97279 6.00526 6.08717 6.09779 6.16159 6.22156 6.27766 6.38483 6.39358 6.54000 6.58201 6.63307 6.68954 6.79206 6.90253 6.94915 7.00126 7.19673 7.30096 7.58025 7.75263 7.88985 8.06767 8.36522 8.52620 8.96522 9.58321 11.06930 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.005560 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.673661 B = 5034.847500 C = 6464.060082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.144 4.144 3 C -0.114 4.114 4 C -0.132 4.132 5 C -0.084 4.084 6 C -0.083 4.083 7 H 0.077 0.923 8 C 0.086 3.914 9 H 0.035 0.965 10 C -0.137 4.137 11 N -0.679 5.679 12 C 0.107 3.893 13 C 0.037 3.963 14 C -0.491 4.491 15 H 0.058 0.942 16 C 0.071 3.929 17 N -0.879 5.879 18 Si 0.883 3.117 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.203 4.203 23 C -0.147 4.147 24 C -0.115 4.115 25 C -0.075 4.075 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.348 0.652 38 H 0.024 0.976 39 H 0.039 0.961 40 H 0.258 0.742 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -11.160 0.255 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.144 4.144 3 C -0.114 4.114 4 C -0.189 4.189 5 C -0.121 4.121 6 C -0.102 4.102 7 H 0.095 0.905 8 C -0.024 4.024 9 H 0.053 0.947 10 C -0.195 4.195 11 N -0.312 5.312 12 C -0.022 4.022 13 C 0.037 3.963 14 C -0.529 4.529 15 H 0.077 0.923 16 C -0.132 4.132 17 N -0.516 5.516 18 Si 0.711 3.289 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.241 4.241 23 C -0.186 4.186 24 C -0.153 4.153 25 C -0.112 4.112 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.169 0.831 38 H 0.043 0.957 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.549 -11.421 -0.060 16.243 hybrid contribution -0.880 1.425 1.015 1.958 sum -12.429 -9.997 0.955 15.979 Atomic orbital electron populations 1.20901 0.93232 1.01541 1.01490 1.20611 0.95133 0.94507 1.04150 1.20734 0.95565 0.94472 1.00631 1.21123 0.99206 0.96242 1.02300 1.20497 0.91124 0.98216 1.02250 1.21323 0.94029 0.94438 1.00383 0.90453 1.21502 0.92097 0.93303 0.95522 0.94696 1.21822 1.00308 0.96006 1.01384 1.60584 1.08453 1.12840 1.49340 1.21501 0.90354 0.94714 0.95615 1.18812 0.90649 0.93246 0.93633 1.20455 1.14903 1.01865 1.15685 0.92349 1.24986 0.94655 0.97316 0.96244 1.70039 1.27516 1.36494 1.17517 0.86738 0.81238 0.82570 0.78397 1.20710 1.21324 1.19797 1.22909 1.09776 0.98434 0.92935 1.22462 0.96644 1.00170 0.99275 1.21710 0.94932 0.98794 0.99840 1.20340 0.95140 0.94523 1.01219 0.92702 0.92049 0.91957 0.91577 0.91851 0.91571 0.91053 0.90176 0.93076 0.93207 0.92413 0.83108 0.95737 0.94270 0.93197 0.91885 0.91047 0.89426 0.92568 0.91246 0.92064 0.91308 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.35 36.00 0.30 -0.81 16 2 C -0.14 -1.70 5.84 -100.94 -0.59 -2.29 16 3 C -0.11 -1.50 5.84 -100.89 -0.59 -2.09 16 4 C -0.13 -1.59 9.63 36.01 0.35 -1.24 16 5 C -0.08 -1.24 4.65 -28.13 -0.13 -1.37 16 6 C -0.08 -1.16 1.95 -90.40 -0.18 -1.33 16 7 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 8 C 0.09 1.38 2.21 -67.71 -0.15 1.23 16 9 H 0.04 0.60 7.73 -51.93 -0.40 0.20 16 10 C -0.14 -1.97 9.09 37.16 0.34 -1.63 16 11 N -0.68 -13.13 6.34 -106.72 -0.68 -13.81 16 12 C 0.11 2.39 5.39 -3.82 -0.02 2.37 16 13 C 0.04 0.92 1.79 -155.66 -0.28 0.64 16 14 C -0.49 -13.12 8.21 -34.44 -0.28 -13.40 16 15 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 16 C 0.07 1.92 5.41 -17.82 -0.10 1.82 16 17 N -0.88 -24.76 11.92 55.43 0.66 -24.10 16 18 Si 0.88 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.20 -4.66 9.96 -26.69 -0.27 -4.93 16 23 C -0.15 -3.61 8.85 -26.69 -0.24 -3.84 16 24 C -0.11 -1.36 5.13 -26.52 -0.14 -1.49 16 25 C -0.08 -0.81 5.69 -28.18 -0.16 -0.97 16 26 H 0.05 0.46 7.93 -51.93 -0.41 0.05 16 27 H 0.06 0.56 7.69 -51.92 -0.40 0.17 16 28 H 0.06 0.58 7.33 -51.93 -0.38 0.20 16 29 H 0.07 0.68 5.21 -51.93 -0.27 0.41 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.08 1.29 6.71 -51.93 -0.35 0.94 16 34 H 0.05 0.78 7.53 -51.93 -0.39 0.39 16 35 H 0.05 0.60 6.31 -51.93 -0.33 0.27 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.35 7.05 5.72 -39.29 -0.22 6.82 16 38 H 0.02 0.60 7.96 -51.93 -0.41 0.18 16 39 H 0.04 0.84 7.49 -51.93 -0.39 0.45 16 40 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 43 H 0.09 2.33 7.64 -51.93 -0.40 1.93 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.07 0.75 6.14 -51.93 -0.32 0.43 16 46 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -27.34 364.13 -10.54 -37.88 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.87 Total: 8.03 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: -2.13 Total: -29.35 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.02 Total: -37.91 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.34 -10.54 -37.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659044457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.834 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds