Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.29438 * 117.96646 * 2 1 4 4 C 1.50704 * 117.96236 * 359.53674 * 3 2 1 5 5 C 1.50165 * 124.15060 * 179.73966 * 3 2 1 6 6 C 1.53032 * 110.09547 * 16.71685 * 5 3 2 7 7 H 1.09005 * 109.63687 * 70.67727 * 6 5 3 8 8 C 1.52997 * 109.64305 * 191.09743 * 6 5 3 9 9 H 1.08996 * 109.47387 * 59.57880 * 8 6 5 10 10 C 1.53003 * 109.47067 * 179.58179 * 8 6 5 11 11 N 1.46899 * 109.46931 * 299.57844 * 8 6 5 12 12 C 1.46905 * 111.00074 * 155.00215 * 11 8 6 13 13 C 1.52996 * 109.47579 * 184.10268 * 12 11 8 14 14 C 1.50697 * 115.55155 * 65.28103 * 13 12 11 15 15 H 1.07993 * 120.00432 * 273.40190 * 14 13 12 16 16 C 1.37878 * 119.99613 * 93.40011 * 14 13 12 17 17 N 1.31517 * 120.00051 * 4.50821 * 16 14 13 18 18 Si 1.86805 * 120.00088 * 184.51209 * 16 14 13 19 19 H 1.48503 * 109.46808 * 89.99739 * 18 16 14 20 20 H 1.48496 * 109.47221 * 209.99710 * 18 16 14 21 21 H 1.48499 * 109.46990 * 330.00050 * 18 16 14 22 22 C 1.53002 * 117.49638 * 279.61923 * 13 12 11 23 23 C 1.52998 * 117.49830 * 210.95788 * 13 12 11 24 24 C 1.53390 * 108.61027 * 310.89010 * 6 5 3 25 25 C 1.50071 * 117.95933 * 179.97438 * 2 1 3 26 26 H 1.08990 * 109.47364 * 175.53073 * 1 2 3 27 27 H 1.09008 * 109.46743 * 295.53194 * 1 2 3 28 28 H 1.09005 * 109.47191 * 55.52872 * 1 2 3 29 29 H 1.08994 * 109.47021 * 5.12667 * 4 3 2 30 30 H 1.08997 * 109.47457 * 125.12934 * 4 3 2 31 31 H 1.09000 * 109.46703 * 245.13298 * 4 3 2 32 32 H 1.09003 * 109.20757 * 256.63998 * 5 3 2 33 33 H 1.08998 * 109.56092 * 137.02174 * 5 3 2 34 34 H 1.08992 * 109.47179 * 179.97438 * 10 8 6 35 35 H 1.08995 * 109.46655 * 300.00166 * 10 8 6 36 36 H 1.09004 * 109.46967 * 59.99749 * 10 8 6 37 37 H 1.00899 * 111.00522 * 31.04988 * 11 8 6 38 38 H 1.09005 * 109.46880 * 304.10233 * 12 11 8 39 39 H 1.09002 * 109.47185 * 64.09643 * 12 11 8 40 40 H 0.97004 * 119.99910 * 185.00384 * 17 16 14 41 41 H 1.09004 * 117.50143 * 359.97438 * 22 13 12 42 42 H 1.08996 * 117.50004 * 145.02288 * 22 13 12 43 43 H 1.09004 * 117.49512 * 214.97519 * 23 13 12 44 44 H 1.08999 * 117.49796 * 359.97335 * 23 13 12 45 45 H 1.09006 * 109.63915 * 187.01414 * 24 6 5 46 46 H 1.08997 * 109.64640 * 307.63907 * 24 6 5 47 47 H 1.09004 * 109.35457 * 76.95038 * 25 2 1 48 48 H 1.08990 * 109.25021 * 317.29274 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 1.2697 2.3915 -0.0108 5 6 3.6069 1.3050 0.0056 6 6 4.2795 -0.0076 -0.4022 7 1 4.1093 -0.1924 -1.4630 8 6 5.7826 0.0784 -0.1300 9 1 5.9497 0.2632 0.9312 10 6 6.4495 -1.2395 -0.5294 11 7 6.3604 1.1772 -0.9153 12 6 7.5895 1.6824 -0.2890 13 6 8.1047 2.8886 -1.0766 14 6 7.2146 4.1045 -1.0593 15 1 6.4201 4.2025 -1.7842 16 6 7.4146 5.0919 -0.1180 17 7 8.4356 5.0162 0.7076 18 14 6.2354 6.5370 -0.0152 19 1 5.1327 6.2102 0.9243 20 1 6.9630 7.7358 0.4734 21 1 5.6731 6.8137 -1.3614 22 6 8.8966 2.6110 -2.3560 23 6 9.6168 3.1203 -1.1049 24 6 3.6702 -1.1473 0.4240 25 6 2.2106 -1.3256 0.0006 26 1 -0.3633 -1.0244 -0.0801 27 1 -0.3633 0.4430 0.9274 28 1 -0.3634 0.5817 -0.8472 29 1 0.2178 2.1194 0.0746 30 1 1.5500 3.0270 0.8293 31 1 1.4309 2.9310 -0.9441 32 1 3.9338 1.5822 1.0079 33 1 3.8916 2.0899 -0.6951 34 1 7.5204 -1.1780 -0.3358 35 1 6.0208 -2.0547 0.0533 36 1 6.2824 -1.4242 -1.5906 37 1 5.6898 1.9197 -1.0461 38 1 7.3776 1.9822 0.7373 39 1 8.3463 0.8979 -0.2894 40 1 8.5358 5.6710 1.4163 41 1 9.0509 1.5690 -2.6364 42 1 8.7742 3.3081 -3.1849 43 1 9.9678 4.1523 -1.1114 44 1 10.2445 2.4136 -0.5620 45 1 4.2209 -2.0695 0.2382 46 1 3.7161 -0.8968 1.4838 47 1 2.1748 -1.7540 -1.0011 48 1 1.7112 -1.9971 0.6988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659044457.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -1.498525 kcal Electronic energy + Delta-G solvation = -22597.811519 eV Core-core repulsion = 19651.794385 eV Total energy + Delta-G solvation = -2946.017133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58275 -38.78279 -37.08299 -34.12308 -33.80443 -32.42494 -30.78971 -28.32348 -27.64231 -26.76015 -25.94161 -23.78295 -22.90480 -22.51943 -21.18070 -20.60554 -17.94987 -17.86058 -16.84944 -16.61228 -16.04205 -15.77665 -15.61685 -15.42386 -15.16533 -14.59272 -14.49660 -14.22310 -14.12157 -13.55926 -13.45577 -13.32276 -13.20736 -13.02647 -12.82138 -12.78074 -12.70807 -12.50841 -12.41129 -12.33403 -12.16714 -12.00458 -11.94279 -11.51404 -11.34904 -11.00696 -10.88658 -10.80602 -10.31560 -9.91413 -9.35035 -9.10217 -8.09187 -6.21950 1.33374 1.37412 1.39859 1.48462 2.40828 3.17343 3.29842 3.67870 3.73086 3.78514 4.01487 4.17795 4.24269 4.36385 4.40769 4.46924 4.55915 4.60674 4.63640 4.67098 4.70566 4.72639 4.78024 4.79289 4.87633 4.92061 4.95907 4.98676 5.04897 5.06751 5.09796 5.10290 5.14665 5.18167 5.18724 5.28099 5.32475 5.34330 5.47154 5.56714 5.67366 5.77867 5.78264 5.84441 6.23698 6.40894 6.47312 6.70650 6.88217 7.46418 8.97168 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.005560 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.673661 B = 5034.847500 C = 6464.060082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.132 4.132 3 C -0.144 4.144 4 C -0.130 4.130 5 C -0.080 4.080 6 C -0.074 4.074 7 H 0.075 0.925 8 C 0.084 3.916 9 H 0.020 0.980 10 C -0.131 4.131 11 N -0.676 5.676 12 C 0.123 3.877 13 C 0.015 3.985 14 C -0.500 4.500 15 H 0.052 0.948 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 0.942 3.058 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.181 4.181 23 C -0.153 4.153 24 C -0.110 4.110 25 C -0.077 4.077 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.340 0.660 38 H -0.007 1.007 39 H 0.047 0.953 40 H 0.257 0.743 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.906 -13.076 -0.190 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.132 4.132 3 C -0.144 4.144 4 C -0.187 4.187 5 C -0.117 4.117 6 C -0.093 4.093 7 H 0.093 0.907 8 C -0.026 4.026 9 H 0.038 0.962 10 C -0.189 4.189 11 N -0.309 5.309 12 C -0.006 4.006 13 C 0.014 3.986 14 C -0.538 4.538 15 H 0.070 0.930 16 C -0.174 4.174 17 N -0.545 5.545 18 Si 0.768 3.232 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.218 4.218 23 C -0.191 4.191 24 C -0.148 4.148 25 C -0.114 4.114 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.011 0.989 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.458 -13.349 -0.515 18.962 hybrid contribution -0.288 1.975 1.136 2.296 sum -13.745 -11.375 0.621 17.852 Atomic orbital electron populations 1.20947 0.91370 1.02896 1.02028 1.20980 0.96613 0.94384 1.01201 1.20700 0.94456 0.95679 1.03613 1.21116 1.00253 0.95758 1.01545 1.20381 0.92982 0.98060 1.00300 1.21234 0.92386 0.95022 1.00617 0.90662 1.21641 0.93810 0.92957 0.94208 0.96224 1.21781 0.99554 0.95527 1.02006 1.60623 1.07634 1.13065 1.49568 1.21215 0.91787 0.94015 0.93609 1.18987 0.90522 0.93707 0.95335 1.20673 1.14920 1.02796 1.15450 0.93021 1.25637 0.96040 0.99654 0.96072 1.70147 1.28874 1.37424 1.18093 0.85806 0.79380 0.79552 0.78495 1.20239 1.21275 1.19264 1.22866 1.07588 0.99417 0.91927 1.22340 0.96846 0.99053 1.00878 1.21690 0.95971 0.98218 0.98925 1.20428 0.94166 0.94333 1.02434 0.90978 0.91396 0.91463 0.89545 0.92883 0.92231 0.93202 0.92562 0.94169 0.90429 0.92115 0.83986 0.98851 0.93437 0.93336 0.89736 0.91319 0.92057 0.91484 0.89584 0.92706 0.90133 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.35 71.23 0.59 -1.27 16 2 C -0.13 -2.80 5.84 -15.09 -0.09 -2.89 16 3 C -0.14 -3.71 5.84 -15.06 -0.09 -3.80 16 4 C -0.13 -3.08 9.63 71.24 0.69 -2.39 16 5 C -0.08 -2.42 4.65 29.69 0.14 -2.29 16 6 C -0.07 -2.01 1.95 -10.65 -0.02 -2.03 16 7 H 0.07 2.10 8.13 -2.38 -0.02 2.08 16 8 C 0.08 2.66 2.21 44.92 0.10 2.76 16 9 H 0.02 0.69 7.73 -2.39 -0.02 0.67 16 10 C -0.13 -3.51 9.09 71.98 0.65 -2.86 16 11 N -0.68 -26.46 6.34 -491.56 -3.11 -29.58 16 12 C 0.12 5.59 5.39 86.30 0.47 6.06 16 13 C 0.02 0.76 1.79 -52.93 -0.10 0.66 16 14 C -0.50 -27.30 8.21 25.60 0.21 -27.09 16 15 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 16 C 0.03 1.43 5.41 84.65 0.46 1.89 16 17 N -0.91 -52.40 11.92 21.45 0.26 -52.14 16 18 Si 0.94 43.70 29.54 68.60 2.03 45.72 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 C -0.18 -8.20 9.96 30.62 0.30 -7.89 16 23 C -0.15 -7.58 8.85 30.62 0.27 -7.30 16 24 C -0.11 -2.35 5.13 30.73 0.16 -2.19 16 25 C -0.08 -1.41 5.69 29.66 0.17 -1.24 16 26 H 0.07 0.93 7.93 -2.39 -0.02 0.91 16 27 H 0.07 1.04 7.69 -2.38 -0.02 1.02 16 28 H 0.07 1.05 7.33 -2.38 -0.02 1.03 16 29 H 0.09 1.63 5.21 -2.39 -0.01 1.62 16 30 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.06 1.92 6.71 -2.39 -0.02 1.91 16 34 H 0.04 1.16 7.53 -2.39 -0.02 1.14 16 35 H 0.08 1.64 6.31 -2.39 -0.02 1.63 16 36 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.34 14.22 5.72 -89.69 -0.51 13.71 16 38 H -0.01 -0.34 7.96 -2.38 -0.02 -0.36 16 39 H 0.05 2.05 7.49 -2.39 -0.02 2.03 16 40 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 41 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 42 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.06 3.34 7.64 -2.38 -0.02 3.32 16 44 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.09 1.56 6.14 -2.38 -0.01 1.55 16 46 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 47 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -59.15 364.13 3.48 -55.67 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.40 Total: 32.20 kcal Atomic # 6 Polarization: -55.79 SS G_CDS: 3.92 Total: -51.87 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.86 Total: -81.72 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -59.15 3.48 -55.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659044457.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.169 kcal (2) G-P(sol) polarization free energy of solvation -59.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds