Wall clock time and date at job start Mon Mar 30 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29439 * 117.96396 * 2 1 4 4 C 1.50699 * 117.96190 * 0.51463 * 3 2 1 5 5 C 1.50070 * 124.07268 * 180.49215 * 3 2 1 6 6 C 1.53022 * 110.14846 * 342.87015 * 5 3 2 7 7 H 1.08995 * 109.81585 * 289.64724 * 6 5 3 8 8 C 1.52999 * 109.63892 * 169.12094 * 6 5 3 9 9 H 1.09003 * 109.46932 * 180.84061 * 8 6 5 10 10 C 1.53000 * 109.47501 * 300.84018 * 8 6 5 11 11 N 1.46903 * 109.47119 * 60.84436 * 8 6 5 12 12 C 1.46899 * 110.99788 * 158.68955 * 11 8 6 13 13 C 1.53004 * 109.46999 * 177.23348 * 12 11 8 14 14 C 1.50702 * 115.54886 * 304.56831 * 13 12 11 15 15 H 1.08004 * 119.99942 * 144.00802 * 14 13 12 16 16 C 1.37878 * 120.00142 * 324.00644 * 14 13 12 17 17 N 1.31516 * 119.99644 * 2.91753 * 16 14 13 18 18 Si 1.86803 * 120.00157 * 182.91311 * 16 14 13 19 19 H 1.48497 * 109.46580 * 90.00482 * 18 16 14 20 20 H 1.48495 * 109.46829 * 210.00163 * 18 16 14 21 21 H 1.48500 * 109.47056 * 330.00371 * 18 16 14 22 22 C 1.52992 * 117.50125 * 158.89687 * 13 12 11 23 23 C 1.53001 * 117.49846 * 90.23349 * 13 12 11 24 24 C 1.53386 * 108.43827 * 49.43709 * 6 5 3 25 25 C 1.50066 * 117.95895 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.46779 * 275.57475 * 1 2 3 27 27 H 1.09002 * 109.47251 * 35.56836 * 1 2 3 28 28 H 1.09002 * 109.47339 * 155.57146 * 1 2 3 29 29 H 1.09003 * 109.46880 * 64.14445 * 4 3 2 30 30 H 1.09002 * 109.47320 * 184.14044 * 4 3 2 31 31 H 1.08995 * 109.47651 * 304.14403 * 4 3 2 32 32 H 1.09002 * 109.35455 * 222.65823 * 5 3 2 33 33 H 1.08997 * 109.35551 * 103.07917 * 5 3 2 34 34 H 1.09004 * 109.46902 * 300.00385 * 10 8 6 35 35 H 1.09003 * 109.46992 * 60.00080 * 10 8 6 36 36 H 1.08994 * 109.47200 * 180.02562 * 10 8 6 37 37 H 1.00906 * 110.99760 * 282.63668 * 11 8 6 38 38 H 1.09000 * 109.47341 * 297.22617 * 12 11 8 39 39 H 1.09001 * 109.47595 * 57.23721 * 12 11 8 40 40 H 0.97007 * 119.99686 * 185.03755 * 17 16 14 41 41 H 1.09002 * 117.50070 * 359.97438 * 22 13 12 42 42 H 1.08997 * 117.50248 * 145.02113 * 22 13 12 43 43 H 1.09003 * 117.49962 * 214.98025 * 23 13 12 44 44 H 1.08995 * 117.50130 * 0.02562 * 23 13 12 45 45 H 1.09005 * 109.64457 * 52.24582 * 24 6 5 46 46 H 1.09001 * 109.64406 * 172.87831 * 24 6 5 47 47 H 1.09004 * 109.36154 * 42.63348 * 25 2 1 48 48 H 1.09004 * 109.24483 * 282.98019 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 1.2697 2.3915 0.0120 5 6 3.6061 1.3030 -0.0107 6 6 4.2795 -0.0077 0.4021 7 1 4.1093 -0.1925 1.4627 8 6 5.7826 0.0784 0.1297 9 1 6.2572 -0.8618 0.4108 10 6 6.0169 0.3430 -1.3589 11 7 6.3613 1.1741 0.9189 12 6 7.8082 0.9900 1.0934 13 6 8.3854 2.1824 1.8589 14 6 8.1119 3.5360 1.2556 15 1 7.9321 4.3866 1.8965 16 6 8.0912 3.6887 -0.1146 17 7 8.2531 2.6428 -0.8952 18 14 7.8332 5.3812 -0.8620 19 1 9.1487 6.0417 -1.0574 20 1 7.1486 5.2442 -2.1726 21 1 6.9972 6.2027 0.0498 22 6 9.7252 1.9837 2.5702 23 6 8.4334 2.0859 3.3851 24 6 3.6702 -1.1473 -0.4242 25 6 2.2106 -1.3255 -0.0006 26 1 -0.3633 0.0998 1.0228 27 1 -0.3634 0.8359 -0.5978 28 1 -0.3634 -0.9357 -0.4250 29 1 0.7023 2.4374 0.9415 30 1 1.9146 3.2671 -0.0637 31 1 0.5817 2.3729 -0.8332 32 1 3.8901 2.0906 0.6872 33 1 3.9330 1.5769 -1.0138 34 1 5.5875 -0.4700 -1.9444 35 1 5.5423 1.2832 -1.6399 36 1 7.0877 0.4039 -1.5529 37 1 6.1587 2.0687 0.4984 38 1 7.9929 0.0741 1.6548 39 1 8.2861 0.9199 0.1162 40 1 8.3118 2.7595 -1.8565 41 1 10.1954 1.0033 2.4933 42 1 10.4087 2.8321 2.6023 43 1 8.2676 3.0015 3.9528 44 1 8.0542 1.1728 3.8438 45 1 3.7161 -0.8966 -1.4840 46 1 4.2208 -2.0695 -0.2385 47 1 1.7117 -1.9991 -0.6974 48 1 2.1749 -1.7517 1.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659044459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:17 Heat of formation + Delta-G solvation = 14.033606 kcal Electronic energy + Delta-G solvation = -22964.929996 eV Core-core repulsion = 20019.586386 eV Total energy + Delta-G solvation = -2945.343610 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 277.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.32831 -37.06245 -35.49009 -32.67876 -32.08461 -31.20247 -28.66068 -26.92397 -25.77576 -25.53809 -24.14705 -22.96741 -21.51089 -21.00070 -19.13884 -18.64054 -16.69982 -16.14274 -14.96669 -14.77566 -14.74625 -14.41289 -14.02361 -13.84135 -13.58420 -13.48606 -13.32288 -12.58592 -12.37491 -12.29734 -11.97868 -11.87952 -11.80873 -11.63505 -11.40022 -11.26941 -11.09321 -10.98479 -10.75095 -10.68217 -10.42891 -10.35175 -10.18742 -10.03463 -9.88434 -9.60945 -9.18183 -8.87147 -8.66739 -8.24567 -8.11697 -7.03234 -5.91441 -4.09782 2.43059 3.25014 3.33112 3.36707 4.34984 4.84825 4.95700 4.98772 5.15503 5.24723 5.43880 5.52363 5.58673 5.59501 5.60672 5.67903 5.79333 5.81071 5.91093 5.93701 6.01422 6.06995 6.10364 6.13952 6.19217 6.21878 6.27497 6.36256 6.42788 6.53018 6.54103 6.63904 6.76993 6.81921 6.83819 6.86317 6.94043 6.99128 7.06351 7.19590 7.33261 7.35226 7.42063 7.70489 8.05522 8.46189 8.49507 8.80170 8.97153 9.50600 10.94072 Molecular weight = 277.21amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.005398 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.565408 B = 5185.590793 C = 5827.487189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.148 4.148 3 C -0.114 4.114 4 C -0.121 4.121 5 C -0.079 4.079 6 C -0.069 4.069 7 H 0.071 0.929 8 C 0.093 3.907 9 H 0.059 0.941 10 C -0.174 4.174 11 N -0.670 5.670 12 C 0.102 3.898 13 C 0.057 3.943 14 C -0.474 4.474 15 H 0.057 0.943 16 C 0.068 3.932 17 N -0.881 5.881 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.211 4.211 23 C -0.204 4.204 24 C -0.115 4.115 25 C -0.074 4.074 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.354 0.646 38 H 0.015 0.985 39 H 0.084 0.916 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.577 -6.177 -1.136 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.148 4.148 3 C -0.114 4.114 4 C -0.177 4.177 5 C -0.116 4.116 6 C -0.088 4.088 7 H 0.089 0.911 8 C -0.019 4.019 9 H 0.077 0.923 10 C -0.233 4.233 11 N -0.301 5.301 12 C -0.027 4.027 13 C 0.056 3.944 14 C -0.511 4.511 15 H 0.075 0.925 16 C -0.134 4.134 17 N -0.520 5.520 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.249 4.249 23 C -0.242 4.242 24 C -0.153 4.153 25 C -0.111 4.111 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.175 0.825 38 H 0.033 0.967 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.807 -6.492 -0.735 13.494 hybrid contribution 0.352 1.150 -1.229 1.720 sum -11.455 -5.342 -1.964 12.791 Atomic orbital electron populations 1.20945 0.93396 1.01719 1.01433 1.20569 0.94987 0.94647 1.04625 1.20852 0.96106 0.94171 1.00257 1.20966 0.99188 0.96383 1.01200 1.20519 0.90110 0.98790 1.02172 1.21142 0.94569 0.93706 0.99411 0.91102 1.21387 0.93058 0.95971 0.91443 0.92277 1.22521 1.03111 1.00085 0.97536 1.60696 1.13414 1.05129 1.50892 1.21560 0.87569 0.93203 1.00387 1.19003 0.92664 0.95203 0.87525 1.20612 1.46712 0.92806 0.91002 0.92458 1.24958 0.94793 0.96535 0.97074 1.69886 1.50227 1.27754 1.04107 0.86623 0.78326 0.84754 0.78620 1.20790 1.21235 1.19854 1.22963 0.92355 0.99520 1.10090 1.22810 1.03236 0.99957 0.98159 1.21695 0.94609 0.98747 1.00215 1.20319 0.95402 0.94425 1.00997 0.92172 0.91957 0.92780 0.92011 0.92120 0.92061 0.90256 0.90829 0.94509 0.92958 0.91087 0.82502 0.96664 0.89795 0.93073 0.91977 0.90787 0.91193 0.91490 0.91852 0.92147 0.91985 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.17 36.01 0.33 -0.91 16 2 C -0.15 -1.90 5.84 -100.94 -0.59 -2.49 16 3 C -0.11 -1.59 5.84 -100.94 -0.59 -2.18 16 4 C -0.12 -1.47 8.68 36.00 0.31 -1.16 16 5 C -0.08 -1.26 4.36 -28.18 -0.12 -1.38 16 6 C -0.07 -1.09 2.27 -90.41 -0.21 -1.30 16 7 H 0.07 1.20 8.13 -51.93 -0.42 0.77 16 8 C 0.09 1.68 2.43 -67.71 -0.16 1.51 16 9 H 0.06 1.09 7.90 -51.93 -0.41 0.68 16 10 C -0.17 -3.14 8.43 37.16 0.31 -2.83 16 11 N -0.67 -14.30 5.92 -106.72 -0.63 -14.93 16 12 C 0.10 2.36 4.54 -3.82 -0.02 2.35 16 13 C 0.06 1.39 2.15 -155.66 -0.33 1.05 16 14 C -0.47 -12.39 8.33 -34.44 -0.29 -12.68 16 15 H 0.06 1.54 7.82 -52.48 -0.41 1.12 16 16 C 0.07 1.72 4.65 -17.82 -0.08 1.64 16 17 N -0.88 -22.28 9.35 55.43 0.52 -21.76 16 18 Si 0.89 20.24 29.54 -169.99 -5.02 15.21 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.21 -4.83 9.96 -26.70 -0.27 -5.09 16 23 C -0.20 -4.60 9.93 -26.69 -0.27 -4.86 16 24 C -0.11 -1.55 4.71 -26.52 -0.12 -1.67 16 25 C -0.07 -0.91 5.77 -28.18 -0.16 -1.07 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.62 6.09 -51.93 -0.32 0.30 16 28 H 0.05 0.51 7.98 -51.93 -0.41 0.09 16 29 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 31 H 0.06 0.67 6.79 -51.93 -0.35 0.32 16 32 H 0.08 1.39 7.72 -51.93 -0.40 0.99 16 33 H 0.07 1.23 5.89 -51.93 -0.31 0.92 16 34 H 0.04 0.58 6.61 -51.93 -0.34 0.24 16 35 H 0.05 0.99 6.19 -51.93 -0.32 0.66 16 36 H 0.07 1.45 6.58 -51.93 -0.34 1.11 16 37 H 0.35 8.23 5.93 -39.29 -0.23 8.00 16 38 H 0.01 0.34 8.07 -51.93 -0.42 -0.08 16 39 H 0.08 2.12 4.83 -51.93 -0.25 1.87 16 40 H 0.26 6.40 8.32 -40.82 -0.34 6.06 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 43 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.06 0.88 6.86 -51.93 -0.36 0.52 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -24.91 355.93 -10.67 -35.58 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -8.64 Total: 11.62 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -2.25 Total: -31.08 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.11 Total: -36.70 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -24.91 -10.67 -35.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659044459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.611 kcal (2) G-P(sol) polarization free energy of solvation -24.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds