Wall clock time and date at job start Mon Mar 30 2020 02:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46792 * 2 1 4 4 N 1.46497 * 109.47290 * 120.00562 * 2 1 3 5 5 C 1.46504 * 119.99570 * 305.03291 * 4 2 1 6 6 C 1.38994 * 120.00616 * 125.03613 * 4 2 1 7 7 C 1.39144 * 119.70018 * 3.10217 * 6 4 2 8 8 C 1.38304 * 119.09267 * 180.02562 * 7 6 4 9 9 C 1.38879 * 118.50702 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.33699 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47026 * 89.99774 * 10 9 8 12 12 C 1.46898 * 110.99764 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47365 * 35.00546 * 12 11 10 14 14 C 1.52995 * 109.47332 * 275.00186 * 12 11 10 15 15 C 1.50701 * 109.47323 * 155.00065 * 12 11 10 16 16 H 1.08009 * 119.99318 * 35.80732 * 15 12 11 17 17 C 1.37870 * 120.00700 * 215.80831 * 15 12 11 18 18 N 1.31509 * 120.00476 * 174.40607 * 17 15 12 19 19 Si 1.86802 * 119.99750 * 354.40506 * 17 15 12 20 20 H 1.48503 * 109.47132 * 94.01301 * 19 17 15 21 21 H 1.48496 * 109.47336 * 214.01400 * 19 17 15 22 22 H 1.48498 * 109.46998 * 334.01222 * 19 17 15 23 23 C 1.38025 * 119.33065 * 359.97438 * 9 8 7 24 24 N 1.31965 * 120.85646 * 0.02562 * 23 9 8 25 25 H 1.08999 * 109.47092 * 299.99703 * 1 2 3 26 26 H 1.08996 * 109.47393 * 60.00299 * 1 2 3 27 27 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46670 * 239.99972 * 2 1 3 29 29 H 1.08996 * 109.47396 * 299.99795 * 3 2 1 30 30 H 1.08999 * 109.47060 * 60.00277 * 3 2 1 31 31 H 1.09004 * 109.46922 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47245 * 270.00005 * 5 4 2 33 33 H 1.09002 * 109.47307 * 30.00298 * 5 4 2 34 34 H 1.08999 * 109.47184 * 150.00482 * 5 4 2 35 35 H 1.07995 * 120.45805 * 0.02755 * 7 6 4 36 36 H 1.08004 * 120.74274 * 179.73038 * 8 7 6 37 37 H 1.08998 * 109.47399 * 210.00033 * 10 9 8 38 38 H 1.09010 * 109.46929 * 330.00096 * 10 9 8 39 39 H 1.00894 * 110.99889 * 56.05359 * 11 10 9 40 40 H 1.08997 * 109.47463 * 305.07466 * 14 12 11 41 41 H 1.09007 * 109.46955 * 65.07466 * 14 12 11 42 42 H 1.09000 * 109.47495 * 185.07022 * 14 12 11 43 43 H 0.97003 * 120.00244 * 180.02562 * 18 17 15 44 44 H 1.07998 * 119.56934 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5758 -0.2578 2.5239 6 6 2.9016 -1.7567 1.0712 7 6 3.3684 -2.1214 -0.1878 8 6 4.2464 -3.1843 -0.2975 9 6 4.6301 -3.8493 0.8598 10 6 5.5845 -5.0134 0.7879 11 7 6.9642 -4.5237 0.9085 12 6 7.9243 -5.6335 0.8420 13 1 7.5558 -6.3919 0.1512 14 6 8.0905 -6.2482 2.2331 15 6 9.2553 -5.1179 0.3584 16 1 9.5928 -4.1350 0.6526 17 6 10.0420 -5.9008 -0.4596 18 7 11.1503 -5.4111 -0.9707 19 14 9.5336 -7.6572 -0.8417 20 1 8.7666 -7.6851 -2.1130 21 1 10.7452 -8.5052 -0.9759 22 1 8.6848 -8.1777 0.2600 23 6 4.1286 -3.4331 2.0765 24 7 3.2920 -2.4153 2.1514 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 2.2594 0.5008 2.9053 33 1 0.5716 0.1603 2.4538 34 1 1.5673 -1.1122 3.2005 35 1 3.0496 -1.5819 -1.0673 36 1 4.6220 -3.4929 -1.2620 37 1 5.3728 -5.7075 1.6013 38 1 5.4626 -5.5247 -0.1671 39 1 7.0857 -3.9904 1.7564 40 1 8.3723 -5.4705 2.9428 41 1 7.1493 -6.7011 2.5450 42 1 8.8683 -7.0113 2.2026 43 1 11.7037 -5.9618 -1.5465 44 1 4.4248 -3.9472 2.9790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663170895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:40 Heat of formation + Delta-G solvation = 45.635570 kcal Electronic energy + Delta-G solvation = -21246.271750 eV Core-core repulsion = 18198.758161 eV Total energy + Delta-G solvation = -3047.513589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27938 -37.80207 -36.13124 -33.37545 -32.20453 -31.86620 -30.83913 -28.58179 -27.51850 -26.51821 -25.19369 -24.37008 -22.78669 -21.78764 -19.99225 -19.94780 -17.83304 -16.96423 -16.50717 -15.27196 -15.11609 -15.04597 -14.66927 -14.33688 -14.14597 -13.58088 -13.55797 -13.26017 -13.15850 -12.91973 -12.51630 -12.45123 -12.35628 -12.23048 -11.97217 -11.94853 -11.58500 -11.45633 -11.22104 -11.08627 -10.93445 -10.61438 -10.12988 -9.84207 -9.64794 -9.51517 -9.20310 -9.04863 -8.53564 -7.48545 -7.23729 -6.02292 -3.98567 1.46755 1.67676 2.84461 3.29501 3.38477 3.39319 4.07288 4.39656 4.44675 4.71562 4.77424 4.88822 4.93464 5.07727 5.22299 5.23036 5.28047 5.36468 5.38089 5.41883 5.47392 5.52660 5.60822 5.62224 5.74378 5.80471 5.87049 5.94671 6.06723 6.11725 6.23677 6.26801 6.42399 6.62014 6.68672 6.77615 6.84387 6.99058 7.16150 7.43529 7.74468 8.01095 8.29272 8.42143 8.70940 9.06464 9.60812 11.11503 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.003267 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.685254 B = 8567.809268 C = 8845.152516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 C -0.164 4.164 4 N -0.612 5.612 5 C 0.100 3.900 6 C 0.394 3.606 7 C -0.242 4.242 8 C -0.012 4.012 9 C -0.176 4.176 10 C 0.104 3.896 11 N -0.669 5.669 12 C 0.180 3.820 13 H 0.037 0.963 14 C -0.172 4.172 15 C -0.491 4.491 16 H 0.075 0.925 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.873 3.127 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.148 3.852 24 N -0.544 5.544 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.328 0.672 40 H 0.045 0.955 41 H 0.020 0.980 42 H 0.052 0.948 43 H 0.262 0.738 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.180 9.052 2.985 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 C -0.222 4.222 4 N -0.327 5.327 5 C -0.043 4.043 6 C 0.160 3.840 7 C -0.267 4.267 8 C -0.039 4.039 9 C -0.181 4.181 10 C -0.026 4.026 11 N -0.299 5.299 12 C 0.072 3.928 13 H 0.055 0.945 14 C -0.232 4.232 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.700 3.300 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.010 4.010 24 N -0.260 5.260 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.145 0.855 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -22.390 9.546 3.024 24.528 hybrid contribution 0.127 -1.571 -0.178 1.586 sum -22.263 7.975 2.846 23.819 Atomic orbital electron populations 1.22186 0.95141 1.02479 1.02346 1.21075 0.93896 0.93002 0.88155 1.22198 1.02041 0.95852 1.02158 1.46288 1.47910 1.32378 1.06120 1.21459 0.98312 1.00452 0.84058 1.18272 0.88879 0.87360 0.89440 1.21404 1.05451 1.02997 0.96807 1.21249 0.91819 0.91879 0.98920 1.20657 1.02049 1.01526 0.93904 1.20751 0.88930 0.92245 1.00639 1.60966 1.00435 1.25438 1.43082 1.19643 0.92254 0.88899 0.91987 0.94544 1.22690 0.98773 1.00779 1.00926 1.20867 0.99353 1.03722 1.29004 0.90708 1.24967 0.95167 0.97984 0.95114 1.69911 1.14612 1.36493 1.32896 0.86935 0.78192 0.85751 0.79075 1.20431 1.21454 1.18893 1.22241 0.90819 0.90975 0.96918 1.67110 1.17432 1.10514 1.30975 0.92161 0.91404 0.92199 0.88894 0.91573 0.92372 0.92054 0.93921 0.92184 0.90511 0.85409 0.84860 0.95558 0.91071 0.85480 0.93558 0.96120 0.92939 0.92764 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.07 37.16 0.34 -0.76 16 2 C 0.14 1.21 3.16 -67.93 -0.21 1.00 16 3 C -0.16 -1.24 9.27 37.16 0.34 -0.90 16 4 N -0.61 -6.82 2.88 -174.08 -0.50 -7.32 16 5 C 0.10 0.98 9.74 59.85 0.58 1.56 16 6 C 0.39 5.48 7.38 -155.03 -1.14 4.33 16 7 C -0.24 -3.23 9.31 -39.22 -0.37 -3.60 16 8 C -0.01 -0.18 9.85 -39.32 -0.39 -0.57 16 9 C -0.18 -2.74 5.41 -104.46 -0.57 -3.30 16 10 C 0.10 1.78 5.63 -4.97 -0.03 1.75 16 11 N -0.67 -13.80 6.22 -109.22 -0.68 -14.48 16 12 C 0.18 4.21 2.12 -68.87 -0.15 4.07 16 13 H 0.04 0.87 5.25 -51.93 -0.27 0.60 16 14 C -0.17 -3.59 8.87 37.16 0.33 -3.26 16 15 C -0.49 -13.85 9.19 -34.44 -0.32 -14.17 16 16 H 0.07 2.33 8.06 -52.48 -0.42 1.90 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 19 Si 0.87 21.43 26.57 -169.99 -4.52 16.91 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.26 -6.13 6.25 56.52 0.35 -5.78 16 23 C 0.15 2.19 10.85 -17.57 -0.19 2.00 16 24 N -0.54 -8.18 9.09 -12.44 -0.11 -8.30 16 25 H 0.06 0.38 6.52 -51.93 -0.34 0.04 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.79 5.30 -51.93 -0.28 0.51 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 7.80 -51.93 -0.41 0.02 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.45 6.18 -51.93 -0.32 0.13 16 34 H 0.08 0.84 7.32 -51.93 -0.38 0.46 16 35 H 0.13 1.40 5.76 -52.49 -0.30 1.10 16 36 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.03 0.42 7.48 -51.93 -0.39 0.03 16 38 H 0.07 1.23 8.01 -51.92 -0.42 0.81 16 39 H 0.33 6.48 8.40 -39.29 -0.33 6.15 16 40 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.02 0.37 7.59 -51.92 -0.39 -0.02 16 42 H 0.05 1.14 7.34 -51.93 -0.38 0.76 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 348.68 15.07 5.25 5.25 Total: -1.00 -31.60 348.68 -8.83 -40.43 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.19 Total: 4.42 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.86 Total: -9.96 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.52 Total: -57.06 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.52 Total: 16.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.60 -8.83 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.066 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds