Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46792 * 2 1 4 4 N 1.46497 * 109.47290 * 120.00562 * 2 1 3 5 5 C 1.46504 * 119.99570 * 305.03291 * 4 2 1 6 6 C 1.38994 * 120.00616 * 125.03613 * 4 2 1 7 7 C 1.39144 * 119.70018 * 3.10217 * 6 4 2 8 8 C 1.38304 * 119.09267 * 180.02562 * 7 6 4 9 9 C 1.38879 * 118.50702 * 359.97438 * 8 7 6 10 10 C 1.50703 * 120.33699 * 179.97438 * 9 8 7 11 11 N 1.46901 * 109.47026 * 89.99774 * 10 9 8 12 12 C 1.46898 * 110.99764 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47365 * 35.00546 * 12 11 10 14 14 C 1.52995 * 109.47332 * 275.00186 * 12 11 10 15 15 C 1.50701 * 109.47323 * 155.00065 * 12 11 10 16 16 H 1.08009 * 119.99318 * 35.80732 * 15 12 11 17 17 C 1.37870 * 120.00700 * 215.80831 * 15 12 11 18 18 N 1.31509 * 120.00476 * 174.40607 * 17 15 12 19 19 Si 1.86802 * 119.99750 * 354.40506 * 17 15 12 20 20 H 1.48503 * 109.47132 * 94.01301 * 19 17 15 21 21 H 1.48496 * 109.47336 * 214.01400 * 19 17 15 22 22 H 1.48498 * 109.46998 * 334.01222 * 19 17 15 23 23 C 1.38025 * 119.33065 * 359.97438 * 9 8 7 24 24 N 1.31965 * 120.85646 * 0.02562 * 23 9 8 25 25 H 1.08999 * 109.47092 * 299.99703 * 1 2 3 26 26 H 1.08996 * 109.47393 * 60.00299 * 1 2 3 27 27 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46670 * 239.99972 * 2 1 3 29 29 H 1.08996 * 109.47396 * 299.99795 * 3 2 1 30 30 H 1.08999 * 109.47060 * 60.00277 * 3 2 1 31 31 H 1.09004 * 109.46922 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47245 * 270.00005 * 5 4 2 33 33 H 1.09002 * 109.47307 * 30.00298 * 5 4 2 34 34 H 1.08999 * 109.47184 * 150.00482 * 5 4 2 35 35 H 1.07995 * 120.45805 * 0.02755 * 7 6 4 36 36 H 1.08004 * 120.74274 * 179.73038 * 8 7 6 37 37 H 1.08998 * 109.47399 * 210.00033 * 10 9 8 38 38 H 1.09010 * 109.46929 * 330.00096 * 10 9 8 39 39 H 1.00894 * 110.99889 * 56.05359 * 11 10 9 40 40 H 1.08997 * 109.47463 * 305.07466 * 14 12 11 41 41 H 1.09007 * 109.46955 * 65.07466 * 14 12 11 42 42 H 1.09000 * 109.47495 * 185.07022 * 14 12 11 43 43 H 0.97003 * 120.00244 * 180.02562 * 18 17 15 44 44 H 1.07998 * 119.56934 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5758 -0.2578 2.5239 6 6 2.9016 -1.7567 1.0712 7 6 3.3684 -2.1214 -0.1878 8 6 4.2464 -3.1843 -0.2975 9 6 4.6301 -3.8493 0.8598 10 6 5.5845 -5.0134 0.7879 11 7 6.9642 -4.5237 0.9085 12 6 7.9243 -5.6335 0.8420 13 1 7.5558 -6.3919 0.1512 14 6 8.0905 -6.2482 2.2331 15 6 9.2553 -5.1179 0.3584 16 1 9.5928 -4.1350 0.6526 17 6 10.0420 -5.9008 -0.4596 18 7 11.1503 -5.4111 -0.9707 19 14 9.5336 -7.6572 -0.8417 20 1 8.7666 -7.6851 -2.1130 21 1 10.7452 -8.5052 -0.9759 22 1 8.6848 -8.1777 0.2600 23 6 4.1286 -3.4331 2.0765 24 7 3.2920 -2.4153 2.1514 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 2.2594 0.5008 2.9053 33 1 0.5716 0.1603 2.4538 34 1 1.5673 -1.1122 3.2005 35 1 3.0496 -1.5819 -1.0673 36 1 4.6220 -3.4929 -1.2620 37 1 5.3728 -5.7075 1.6013 38 1 5.4626 -5.5247 -0.1671 39 1 7.0857 -3.9904 1.7564 40 1 8.3723 -5.4705 2.9428 41 1 7.1493 -6.7011 2.5450 42 1 8.8683 -7.0113 2.2026 43 1 11.7037 -5.9618 -1.5465 44 1 4.4248 -3.9472 2.9790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663170895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = 25.755041 kcal Electronic energy + Delta-G solvation = -21247.133835 eV Core-core repulsion = 18198.758161 eV Total energy + Delta-G solvation = -3048.375674 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31992 -38.76003 -37.66908 -34.83357 -33.82275 -32.84968 -32.15161 -29.95381 -28.09263 -27.51804 -27.17260 -25.61528 -23.87395 -22.84542 -21.83961 -20.82334 -19.09184 -18.66313 -17.56242 -16.82898 -16.21418 -15.98312 -15.90436 -15.68470 -15.32999 -15.12635 -14.53534 -14.46390 -14.23834 -14.00289 -13.86712 -13.85822 -13.53956 -13.18957 -13.10372 -12.90173 -12.78575 -12.72537 -12.57092 -12.36624 -12.21182 -11.90915 -11.74189 -11.60702 -11.10900 -10.79905 -10.69757 -10.60980 -10.28198 -8.94181 -8.36980 -8.23338 -6.24885 0.38025 0.55407 1.36967 1.38520 1.49762 1.99784 2.38484 2.93408 3.11235 3.57042 3.82607 3.89810 4.01138 4.08657 4.15664 4.18878 4.27826 4.32918 4.46203 4.50000 4.66143 4.70421 4.74298 4.75735 4.78603 4.79047 4.87485 4.93053 4.96831 4.98640 5.01718 5.10412 5.15073 5.29905 5.36095 5.47645 5.56837 5.70504 5.72808 6.10244 6.13118 6.46314 6.72018 6.80546 6.81047 7.23469 7.38952 8.94474 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.003267 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.685254 B = 8567.809268 C = 8845.152516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 C -0.159 4.159 4 N -0.611 5.611 5 C 0.099 3.901 6 C 0.386 3.614 7 C -0.244 4.244 8 C -0.022 4.022 9 C -0.193 4.193 10 C 0.112 3.888 11 N -0.685 5.685 12 C 0.184 3.816 13 H 0.037 0.963 14 C -0.166 4.166 15 C -0.496 4.496 16 H 0.027 0.973 17 C 0.006 3.994 18 N -0.954 5.954 19 Si 0.943 3.057 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.238 1.238 23 C 0.146 3.854 24 N -0.561 5.561 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.331 0.669 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.042 0.958 43 H 0.264 0.736 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.993 8.646 3.164 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.032 3.968 3 C -0.217 4.217 4 N -0.325 5.325 5 C -0.043 4.043 6 C 0.151 3.849 7 C -0.268 4.268 8 C -0.049 4.049 9 C -0.198 4.198 10 C -0.017 4.017 11 N -0.315 5.315 12 C 0.075 3.925 13 H 0.055 0.945 14 C -0.225 4.225 15 C -0.535 4.535 16 H 0.045 0.955 17 C -0.190 4.190 18 N -0.595 5.595 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.161 1.161 23 C -0.011 4.011 24 N -0.278 5.278 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.167 0.833 36 H 0.154 0.846 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.149 0.851 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.253 9.172 3.219 27.059 hybrid contribution 0.925 -1.234 -0.212 1.557 sum -24.328 7.938 3.007 25.766 Atomic orbital electron populations 1.22133 0.93408 1.02275 1.03635 1.21326 0.95204 0.93178 0.87080 1.22155 1.00771 0.95395 1.03394 1.46608 1.46856 1.31483 1.07521 1.21522 0.99684 0.99879 0.83258 1.18617 0.89026 0.87817 0.89456 1.21608 1.04961 1.02678 0.97571 1.21409 0.92194 0.92318 0.98945 1.20529 1.02819 1.01884 0.94594 1.20685 0.86898 0.93120 1.01014 1.60720 1.02144 1.25001 1.43653 1.19458 0.90313 0.89454 0.93250 0.94494 1.22532 1.00183 1.00583 0.99209 1.21177 1.01816 1.01806 1.28719 0.95501 1.25895 0.95058 1.02956 0.95107 1.70078 1.16391 1.38558 1.34463 0.85818 0.78181 0.79637 0.79728 1.19769 1.21367 1.16116 1.22449 0.90521 0.90927 0.97205 1.67172 1.18051 1.10998 1.31598 0.91519 0.89491 0.93112 0.88952 0.89561 0.91942 0.93938 0.94059 0.89611 0.91850 0.83278 0.84577 0.93900 0.91409 0.85116 0.93323 0.92804 0.93863 0.92714 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.07 71.98 0.65 -1.02 16 2 C 0.13 1.99 3.16 44.99 0.14 2.14 16 3 C -0.16 -2.06 9.27 71.98 0.67 -1.39 16 4 N -0.61 -12.63 2.88 -704.67 -2.03 -14.66 16 5 C 0.10 1.78 9.74 127.77 1.24 3.02 16 6 C 0.39 10.28 7.38 133.07 0.98 11.26 16 7 C -0.24 -6.23 9.31 22.50 0.21 -6.02 16 8 C -0.02 -0.64 9.85 22.44 0.22 -0.42 16 9 C -0.19 -5.80 5.41 -19.76 -0.11 -5.91 16 10 C 0.11 3.65 5.63 85.56 0.48 4.13 16 11 N -0.68 -27.86 6.22 -499.45 -3.11 -30.96 16 12 C 0.18 8.43 2.12 44.17 0.09 8.53 16 13 H 0.04 1.69 5.25 -2.39 -0.01 1.68 16 14 C -0.17 -6.56 8.87 71.98 0.64 -5.93 16 15 C -0.50 -28.67 9.19 25.60 0.24 -28.43 16 16 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 17 C 0.01 0.36 5.47 84.65 0.46 0.83 16 18 N -0.95 -60.66 13.96 21.44 0.30 -60.36 16 19 Si 0.94 44.04 26.57 68.60 1.82 45.86 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.24 -10.02 6.25 99.48 0.62 -9.40 16 23 C 0.15 4.18 10.85 84.62 0.92 5.09 16 24 N -0.56 -16.37 9.09 -193.27 -1.76 -18.13 16 25 H 0.07 0.63 6.52 -2.39 -0.02 0.62 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.09 1.37 5.30 -2.39 -0.01 1.35 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.76 7.80 -2.39 -0.02 0.74 16 31 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.07 6.18 -2.39 -0.01 1.06 16 34 H 0.06 1.32 7.32 -2.39 -0.02 1.30 16 35 H 0.15 3.03 5.76 -2.91 -0.02 3.02 16 36 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 37 H 0.04 1.26 7.48 -2.39 -0.02 1.24 16 38 H 0.07 2.24 8.01 -2.38 -0.02 2.22 16 39 H 0.33 12.99 8.40 -89.70 -0.75 12.24 16 40 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 41 H 0.05 1.78 7.59 -2.38 -0.02 1.76 16 42 H 0.04 1.77 7.34 -2.39 -0.02 1.75 16 43 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -69.72 348.68 2.22 -67.50 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.14 Total: 24.85 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 6.84 Total: -14.11 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -6.59 Total: -124.11 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.82 Total: 45.86 kcal Total: -69.72 2.22 -67.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663170895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.258 kcal (2) G-P(sol) polarization free energy of solvation -69.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds