Wall clock time and date at job start Mon Mar 30 2020 01:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46970 * 2 1 4 4 N 1.46501 * 109.47411 * 184.85213 * 3 2 1 5 5 C 1.35040 * 126.39541 * 263.91445 * 4 3 2 6 6 N 1.30496 * 108.69942 * 179.97438 * 5 4 3 7 7 C 1.34130 * 109.25856 * 359.76143 * 6 5 4 8 8 C 1.34676 * 108.01544 * 0.39171 * 7 6 5 9 9 C 1.50702 * 126.58929 * 179.87864 * 8 7 6 10 10 N 1.46900 * 109.46815 * 267.25602 * 9 8 7 11 11 C 1.46846 * 111.00332 * 290.27579 * 10 9 8 12 12 C 1.53034 * 109.52597 * 185.84076 * 11 10 9 13 13 C 1.53122 * 109.27632 * 300.82054 * 12 11 10 14 14 C 1.53117 * 109.16060 * 57.65757 * 13 12 11 15 15 H 1.08994 * 109.50678 * 62.32428 * 14 13 12 16 16 C 1.50704 * 109.50320 * 182.40164 * 14 13 12 17 17 H 1.08006 * 120.00033 * 114.50623 * 16 14 13 18 18 C 1.37871 * 120.00257 * 294.50785 * 16 14 13 19 19 N 1.31508 * 120.00471 * 159.19979 * 18 16 14 20 20 Si 1.86804 * 119.99946 * 339.19732 * 18 16 14 21 21 H 1.48496 * 109.47304 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.46878 * 59.99961 * 20 18 16 23 23 H 1.48502 * 109.47285 * 300.00487 * 20 18 16 24 24 C 1.46846 * 111.00027 * 54.48940 * 10 9 8 25 25 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.08989 * 109.47547 * 299.99854 * 1 2 3 27 27 H 1.09004 * 109.47095 * 60.00285 * 1 2 3 28 28 H 1.09002 * 109.47265 * 240.00324 * 2 1 3 29 29 H 1.09000 * 109.47524 * 119.99977 * 2 1 3 30 30 H 1.09003 * 109.47212 * 64.85020 * 3 2 1 31 31 H 1.08995 * 109.47284 * 304.85427 * 3 2 1 32 32 H 1.08002 * 125.65189 * 0.02562 * 5 4 3 33 33 H 1.07995 * 125.99275 * 180.24741 * 7 6 5 34 34 H 1.08996 * 109.47051 * 147.25971 * 9 8 7 35 35 H 1.08998 * 109.46844 * 27.25541 * 9 8 7 36 36 H 1.09006 * 109.45870 * 65.82286 * 11 10 9 37 37 H 1.08998 * 109.46048 * 305.86000 * 11 10 9 38 38 H 1.08992 * 109.50379 * 180.88310 * 12 11 10 39 39 H 1.08996 * 109.50283 * 60.76000 * 12 11 10 40 40 H 1.08994 * 109.52761 * 297.74875 * 13 12 11 41 41 H 1.09008 * 109.57184 * 177.58845 * 13 12 11 42 42 H 0.97000 * 120.00076 * 354.93249 * 19 18 16 43 43 H 1.09005 * 109.46465 * 54.14054 * 24 10 9 44 44 H 1.09001 * 109.46501 * 294.17246 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5003 1.4443 -0.1168 5 6 4.3853 1.5300 0.8995 6 7 5.5931 1.5000 0.4062 7 6 5.5231 1.3899 -0.9287 8 6 4.2224 1.3589 -1.2765 9 6 3.6685 1.2454 -2.6734 10 7 3.4236 2.5893 -3.2137 11 6 2.2986 3.2360 -2.5262 12 6 1.9798 4.5682 -3.2086 13 6 3.2170 5.4691 -3.1614 14 6 4.3868 4.7524 -3.8414 15 1 4.1455 4.5754 -4.8895 16 6 5.6240 5.6077 -3.7475 17 1 6.4703 5.2713 -3.1667 18 6 5.6758 6.8196 -4.4029 19 7 6.5351 7.7383 -4.0196 20 14 4.5253 7.1565 -5.8355 21 1 4.7785 8.5212 -6.3633 22 1 3.1174 7.0583 -5.3733 23 1 4.7648 6.1579 -6.9082 24 6 4.6359 3.4148 -3.1407 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7493 1.9307 0.9303 31 1 1.6074 1.9808 -0.8433 32 1 4.1351 1.6092 1.9471 33 1 6.3626 1.3379 -1.6061 34 1 2.7324 0.6876 -2.6489 35 1 4.3857 0.7240 -3.3074 36 1 2.5647 3.4160 -1.4845 37 1 1.4243 2.5867 -2.5706 38 1 1.1550 5.0552 -2.6884 39 1 1.7004 4.3877 -4.2465 40 1 3.4737 5.6816 -2.1237 41 1 3.0088 6.4030 -3.6838 42 1 7.0810 7.5930 -3.2311 43 1 5.4591 2.8954 -3.6314 44 1 4.8910 3.5940 -2.0962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665227769.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:24 Heat of formation + Delta-G solvation = 51.916491 kcal Electronic energy + Delta-G solvation = -22837.128296 eV Core-core repulsion = 19789.887068 eV Total energy + Delta-G solvation = -3047.241228 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.12451 -38.40246 -35.89355 -34.10827 -32.33759 -32.05443 -30.23061 -29.43957 -26.59798 -25.87958 -24.66367 -22.48087 -22.20518 -21.53061 -20.88098 -19.77033 -18.52249 -17.47648 -17.10133 -15.82120 -15.53678 -14.92089 -14.77647 -14.21880 -14.04829 -13.85455 -13.62423 -13.39015 -13.20358 -12.86994 -12.69383 -12.51730 -12.32785 -12.17536 -11.96792 -11.80197 -11.49113 -11.29858 -11.04369 -10.60890 -10.46936 -10.13414 -9.84759 -9.81396 -9.61380 -9.50035 -9.28691 -8.72390 -8.25818 -8.13248 -7.92775 -6.38937 -3.98696 2.12535 2.79373 3.33928 3.43945 3.49443 3.67316 4.32725 4.38460 4.50034 4.56931 4.68676 4.79854 4.88274 4.91530 5.10421 5.14283 5.26493 5.30875 5.36890 5.47687 5.55543 5.58718 5.60083 5.73710 5.78347 5.86500 5.92888 5.98162 6.19209 6.29639 6.33795 6.46739 6.49719 6.71037 6.84311 6.89857 6.93301 7.28934 7.31241 7.44132 7.52989 7.66965 8.21970 8.26964 8.45160 8.97358 9.67776 10.98668 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.005368 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.979264 B = 5214.827151 C = 5899.902959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.088 3.912 4 N -0.451 5.451 5 C 0.172 3.828 6 N -0.493 5.493 7 C -0.015 4.015 8 C -0.049 4.049 9 C 0.126 3.874 10 N -0.528 5.528 11 C 0.057 3.943 12 C -0.120 4.120 13 C -0.121 4.121 14 C 0.028 3.972 15 H 0.027 0.973 16 C -0.600 4.600 17 H 0.054 0.946 18 C 0.036 3.964 19 N -0.905 5.905 20 Si 1.041 2.959 21 H -0.289 1.289 22 H -0.276 1.276 23 H -0.283 1.283 24 C 0.077 3.923 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.166 0.834 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.028 0.972 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.268 0.732 43 H 0.064 0.936 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 -15.249 7.231 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.034 4.034 4 N -0.134 5.134 5 C -0.110 4.110 6 N -0.211 5.211 7 C -0.163 4.163 8 C -0.165 4.165 9 C -0.003 4.003 10 N -0.251 5.251 11 C -0.071 4.071 12 C -0.158 4.158 13 C -0.159 4.159 14 C 0.009 3.991 15 H 0.045 0.955 16 C -0.638 4.638 17 H 0.072 0.928 18 C -0.170 4.170 19 N -0.539 5.539 20 Si 0.869 3.131 21 H -0.215 1.215 22 H -0.202 1.202 23 H -0.210 1.210 24 C -0.050 4.050 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.215 0.785 33 H 0.183 0.817 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.047 0.953 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.640 -14.106 6.027 20.527 hybrid contribution -0.075 -1.026 1.848 2.115 sum -13.714 -15.132 7.875 21.888 Atomic orbital electron populations 1.21704 0.94336 1.02418 1.02338 1.21886 0.96729 0.95652 1.03273 1.22244 0.77445 0.98696 1.05037 1.45426 1.07046 1.54159 1.06816 1.24833 0.84365 1.06888 0.94901 1.70247 1.22059 1.19212 1.09562 1.22090 0.94964 1.07337 0.91956 1.22315 0.92965 1.11200 0.89975 1.20812 1.00399 0.92887 0.86227 1.62475 1.07489 1.02062 1.53034 1.22208 0.93142 0.96022 0.95679 1.21682 0.98790 0.94808 1.00516 1.22070 0.94511 0.98411 1.00931 1.18984 0.94520 0.90868 0.94739 0.95451 1.21925 1.00852 1.05291 1.35729 0.92760 1.25705 0.98784 0.91948 1.00525 1.70835 1.24050 1.33412 1.25604 0.84107 0.76255 0.75965 0.76731 1.21462 1.20232 1.20953 1.22155 0.89151 0.94401 0.99275 0.91993 0.92346 0.92165 0.91112 0.91347 0.89099 0.88135 0.78496 0.81700 0.90945 0.88546 0.95347 0.92271 0.93024 0.91748 0.93583 0.92240 0.92250 0.91740 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.14 -1.04 6.26 -26.73 -0.17 -1.21 16 3 C 0.09 0.82 5.23 -4.04 -0.02 0.80 16 4 N -0.45 -5.78 2.49 -113.99 -0.28 -6.06 16 5 C 0.17 2.38 12.55 -90.38 -1.13 1.24 16 6 N -0.49 -8.49 11.25 -14.67 -0.16 -8.65 16 7 C -0.01 -0.24 10.64 -17.81 -0.19 -0.43 16 8 C -0.05 -0.72 4.57 -81.60 -0.37 -1.09 16 9 C 0.13 1.74 5.65 -4.97 -0.03 1.71 16 10 N -0.53 -8.89 4.86 -236.11 -1.15 -10.03 16 11 C 0.06 0.89 3.71 -3.84 -0.01 0.87 16 12 C -0.12 -2.08 6.09 -26.65 -0.16 -2.24 16 13 C -0.12 -2.66 4.98 -26.61 -0.13 -2.80 16 14 C 0.03 0.68 1.85 -91.69 -0.17 0.51 16 15 H 0.03 0.67 6.76 -51.93 -0.35 0.32 16 16 C -0.60 -17.06 8.80 -34.44 -0.30 -17.36 16 17 H 0.05 1.68 7.99 -52.48 -0.42 1.26 16 18 C 0.04 1.04 5.30 -17.82 -0.09 0.94 16 19 N -0.91 -28.20 13.69 55.43 0.76 -27.44 16 20 Si 1.04 25.50 26.47 -169.99 -4.50 21.00 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.24 5.74 56.52 0.32 -5.92 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.08 1.59 3.90 -3.83 -0.01 1.58 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.31 8.14 -51.94 -0.42 -0.11 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.70 8.13 -51.93 -0.42 0.27 16 31 H 0.10 1.00 4.26 -51.93 -0.22 0.77 16 32 H 0.20 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 34 H 0.07 0.84 7.45 -51.93 -0.39 0.46 16 35 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.03 0.46 6.02 -51.93 -0.31 0.15 16 37 H 0.06 0.75 7.02 -51.93 -0.36 0.39 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.37 5.12 -51.92 -0.27 1.11 16 42 H 0.27 8.35 8.73 -40.82 -0.36 8.00 16 43 H 0.06 1.35 8.12 -51.93 -0.42 0.93 16 44 H 0.03 0.72 6.62 -51.93 -0.34 0.38 16 LS Contribution 333.35 15.07 5.02 5.02 Total: -1.00 -32.58 333.35 -10.12 -42.70 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.37 Total: 1.47 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.44 Total: -18.00 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.84 Total: -52.18 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.50 Total: 21.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.58 -10.12 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665227769.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.616 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds