Wall clock time and date at job start Mon Mar 30 2020 01:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.35383 * 300.27354 * 9 7 2 11 11 C 1.50062 * 109.35876 * 60.00270 * 9 7 2 12 12 C 1.29443 * 124.07783 * 137.31649 * 11 9 7 13 13 C 1.50066 * 124.07380 * 359.55235 * 12 11 9 14 14 C 1.53026 * 110.15030 * 17.12899 * 13 12 11 15 15 C 1.53026 * 109.35568 * 180.68899 * 9 7 2 16 16 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 17 17 H 1.08004 * 117.96150 * 317.33204 * 11 9 7 18 18 H 1.07995 * 117.96145 * 179.52548 * 12 11 9 19 19 H 1.08994 * 109.36011 * 137.33998 * 13 12 11 20 20 H 1.09005 * 109.35333 * 256.92137 * 13 12 11 21 21 H 1.08996 * 109.63877 * 70.24725 * 14 13 12 22 22 H 1.08993 * 109.64350 * 190.66883 * 14 13 12 23 23 H 1.09000 * 109.64304 * 310.04132 * 15 9 7 24 24 H 1.09006 * 109.64233 * 70.66879 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6211 -2.5525 0.8884 11 6 0.3898 -2.5763 -1.2259 12 6 0.2600 -3.6376 -1.9555 13 6 0.9603 -4.9364 -1.6823 14 6 1.4803 -4.9624 -0.2433 15 6 2.2477 -3.6602 0.0185 16 1 -0.4850 -0.8401 0.0004 17 1 -0.1556 -1.6910 -1.5182 18 1 -0.3931 -3.5852 -2.8140 19 1 0.2627 -5.7609 -1.8293 20 1 1.7978 -5.0472 -2.3711 21 1 0.6411 -5.0389 0.4481 22 1 2.1445 -5.8161 -0.1091 23 1 2.9959 -3.5129 -0.7603 24 1 2.7337 -3.7108 0.9929 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005413228.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:27 Heat of formation + Delta-G solvation = -26.156247 kcal Electronic energy + Delta-G solvation = -8094.939779 eV Core-core repulsion = 6585.806410 eV Total energy + Delta-G solvation = -1509.133369 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 152.090 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.36564 -35.16140 -31.85904 -31.00987 -26.63470 -23.37665 -22.92029 -19.20986 -18.52566 -16.58578 -15.71908 -15.39331 -14.97386 -14.20648 -13.50791 -13.41830 -13.11895 -12.64875 -12.57807 -11.95456 -11.93153 -11.50550 -10.91421 -10.64638 -10.47181 -9.62701 -8.59227 -6.35118 1.50992 1.57116 1.64731 1.77196 2.56476 3.19174 4.00438 4.07445 4.17673 4.63644 4.67623 4.75195 4.87410 4.90142 5.04637 5.10993 5.25132 5.50874 5.66622 5.96206 5.98683 6.12574 6.33844 6.67220 7.45829 8.76122 Molecular weight = 152.09amu Principal moments of inertia in cm(-1) A = 0.099498 B = 0.017880 C = 0.016467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.344021 B = 1565.600581 C = 1699.967733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.034 4.034 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.607 4.607 8 H 0.047 0.953 9 C 0.043 3.957 10 H -0.005 1.005 11 C -0.138 4.138 12 C -0.197 4.197 13 C -0.076 4.076 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.264 0.736 17 H 0.070 0.930 18 H 0.100 0.900 19 H 0.088 0.912 20 H 0.076 0.924 21 H 0.051 0.949 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 -6.764 -2.127 7.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.232 4.232 3 Si 0.942 3.058 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.645 4.645 8 H 0.065 0.935 9 C 0.025 3.975 10 H 0.012 0.988 11 C -0.157 4.157 12 C -0.215 4.215 13 C -0.113 4.113 14 C -0.153 4.153 15 C -0.135 4.135 16 H 0.075 0.925 17 H 0.088 0.912 18 H 0.118 0.882 19 H 0.106 0.894 20 H 0.094 0.906 21 H 0.070 0.930 22 H 0.105 0.895 23 H 0.067 0.933 24 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.839 -5.142 -2.127 6.247 hybrid contribution -0.181 -1.269 0.039 1.282 sum 2.657 -6.411 -2.088 7.247 Atomic orbital electron populations 1.70848 1.07826 1.30691 1.48482 1.27296 0.96688 1.06459 0.92748 0.82899 0.74245 0.71243 0.77433 1.19672 1.20621 1.20409 1.22417 0.94183 0.93036 1.54844 0.93508 1.17867 0.93340 0.95086 0.91217 0.98772 1.22536 0.97608 0.96782 0.98791 1.22134 1.02966 0.95798 1.00580 1.20379 0.99642 0.94624 0.96632 1.21631 0.99704 0.97155 0.96818 1.21467 0.97485 0.94497 1.00066 0.92522 0.91212 0.88214 0.89399 0.90584 0.93003 0.89546 0.93281 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 12.90 21.45 0.28 -58.45 14 2 C -0.03 -2.01 5.26 84.65 0.45 -1.56 14 3 Si 1.12 51.55 29.90 68.60 2.05 53.60 14 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 14 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 14 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 14 7 C -0.61 -35.52 8.52 25.60 0.22 -35.30 14 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 14 9 C 0.04 2.28 2.08 -12.47 -0.03 2.26 14 10 H -0.01 -0.32 8.00 -2.39 -0.02 -0.34 14 11 C -0.14 -6.98 8.05 27.04 0.22 -6.77 14 12 C -0.20 -8.03 9.80 27.04 0.27 -7.77 14 13 C -0.08 -2.46 6.11 29.66 0.18 -2.28 14 14 C -0.12 -3.93 6.01 30.74 0.18 -3.74 14 15 C -0.10 -4.19 5.25 30.74 0.16 -4.03 14 16 H 0.26 16.60 5.60 -92.71 -0.52 16.08 14 17 H 0.07 3.95 6.06 -2.91 -0.02 3.93 14 18 H 0.10 3.69 8.06 -2.91 -0.02 3.66 14 19 H 0.09 2.32 8.14 -2.39 -0.02 2.30 14 20 H 0.08 2.26 8.14 -2.38 -0.02 2.24 14 21 H 0.05 1.80 8.12 -2.39 -0.02 1.78 14 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 14 23 H 0.05 2.11 8.09 -2.39 -0.02 2.09 14 24 H 0.05 2.10 8.14 -2.38 -0.02 2.08 14 Total: -1.00 -64.92 199.45 5.38 -59.55 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.40 Total: 4.49 kcal Atomic # 6 Polarization: -60.84 SS G_CDS: 1.65 Total: -59.19 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.28 Total: -58.45 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Total: -64.92 5.38 -59.55 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005413228.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.389 kcal (2) G-P(sol) polarization free energy of solvation -64.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds