Wall clock time and date at job start Mon Mar 30 2020 02:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30411 * 128.66046 * 2 1 4 4 O 1.20769 * 109.95620 * 180.02562 * 3 2 1 5 5 N 1.20929 * 116.14796 * 359.68856 * 4 3 2 6 6 C 1.32750 * 108.87918 * 0.50134 * 5 4 3 7 7 C 1.41596 * 128.83595 * 179.82117 * 6 5 4 8 8 H 1.08002 * 120.00550 * 179.68023 * 7 6 5 9 9 C 1.40073 * 119.99685 * 359.39755 * 7 6 5 10 10 N 1.30704 * 120.00102 * 0.27960 * 9 7 6 11 11 Si 1.86803 * 119.99980 * 180.27395 * 9 7 6 12 12 H 1.48508 * 109.46742 * 90.00444 * 11 9 7 13 13 H 1.48501 * 109.47216 * 210.00302 * 11 9 7 14 14 H 1.48499 * 109.47135 * 330.00643 * 11 9 7 15 15 H 1.08997 * 109.47219 * 269.97313 * 1 2 3 16 16 H 1.09004 * 109.47149 * 29.97237 * 1 2 3 17 17 H 1.09007 * 109.47209 * 149.97055 * 1 2 3 18 18 H 0.96996 * 120.00349 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3217 1.0183 0.0000 4 8 3.4656 0.6310 -0.0005 5 7 3.6222 -0.5680 0.0050 6 6 2.4324 -1.1567 -0.0006 7 6 2.1257 -2.5391 -0.0009 8 1 1.0956 -2.8637 -0.0008 9 6 3.1582 -3.4855 -0.0074 10 7 4.4049 -3.0927 -0.0077 11 14 2.7536 -5.3092 -0.0156 12 1 2.6440 -5.7856 -1.4179 13 1 3.8314 -6.0585 0.6789 14 1 1.4639 -5.5332 0.6856 15 1 -0.3633 -0.0005 1.0276 16 1 -0.3634 0.8903 -0.5134 17 1 -0.3634 -0.8898 -0.5143 18 1 5.1199 -3.7481 -0.0118 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026439021.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:16 Heat of formation + Delta-G solvation = 64.384901 kcal Electronic energy + Delta-G solvation = -8039.340373 eV Core-core repulsion = 6267.448246 eV Total energy + Delta-G solvation = -1771.892127 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 154.048 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -46.31886 -36.29299 -35.06827 -33.69690 -29.82589 -28.60309 -23.77770 -22.21399 -19.25033 -18.77939 -17.87789 -16.62500 -15.21444 -14.35099 -14.09042 -14.04987 -13.32729 -13.05943 -12.79001 -12.17294 -11.73237 -11.68838 -11.36358 -10.92619 -10.36213 -8.66077 -6.76866 1.08489 1.29539 1.42176 1.59425 1.86882 2.20708 3.15813 3.48511 3.76151 4.13517 4.73152 4.80512 4.81895 5.12548 5.31066 5.42062 6.14383 6.41448 6.70688 8.34636 8.85514 Molecular weight = 154.05amu Principal moments of inertia in cm(-1) A = 0.086013 B = 0.020814 C = 0.016912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 325.453262 B = 1344.954336 C = 1655.258953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.075 4.075 3 N -0.406 5.406 4 O 0.223 5.777 5 N -0.466 5.466 6 C 0.116 3.884 7 C -0.453 4.453 8 H 0.115 0.885 9 C 0.017 3.983 10 N -0.808 5.808 11 Si 1.009 2.991 12 H -0.260 1.260 13 H -0.272 1.272 14 H -0.244 1.244 15 H 0.086 0.914 16 H 0.083 0.917 17 H 0.090 0.910 18 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 -3.246 -0.012 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.241 4.241 3 N -0.137 5.137 4 O 0.034 5.966 5 N -0.220 5.220 6 C -0.032 4.032 7 C -0.491 4.491 8 H 0.133 0.867 9 C -0.201 4.201 10 N -0.435 5.435 11 Si 0.827 3.173 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.167 1.167 15 H 0.105 0.895 16 H 0.101 0.899 17 H 0.108 0.892 18 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.308 -2.309 -0.003 5.789 hybrid contribution -0.290 -1.054 -0.014 1.093 sum -5.598 -3.362 -0.016 6.530 Atomic orbital electron populations 1.19979 0.82386 1.04014 1.03691 1.26683 1.00683 0.87977 1.08806 1.74133 0.93366 1.27434 1.18747 1.84679 1.21949 1.20440 1.69558 1.76070 1.22318 0.88913 1.34687 1.23446 0.85594 0.97246 0.96960 1.19251 0.96270 0.86569 1.47035 0.86668 1.27173 0.93761 1.07511 0.91611 1.69970 1.01394 1.38982 1.33160 0.84809 0.79653 0.73190 0.79650 1.18465 1.19721 1.16660 0.89522 0.89871 0.89165 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.47 10.51 71.24 0.75 -0.72 13 2 C -0.07 -3.64 7.83 45.40 0.36 -3.29 13 3 N -0.41 -21.03 12.18 -50.75 -0.62 -21.64 13 4 O 0.22 12.66 11.64 140.90 1.64 14.30 13 5 N -0.47 -28.36 10.82 -53.55 -0.58 -28.94 13 6 C 0.12 6.57 7.15 42.46 0.30 6.87 13 7 C -0.45 -23.98 9.51 23.54 0.22 -23.75 13 8 H 0.12 5.33 7.85 -2.91 -0.02 5.31 13 9 C 0.02 0.89 5.50 85.31 0.47 1.36 13 10 N -0.81 -45.13 12.14 21.84 0.27 -44.87 13 11 Si 1.01 37.00 29.56 68.60 2.03 39.03 13 12 H -0.26 -9.15 7.11 99.48 0.71 -8.44 13 13 H -0.27 -9.74 7.11 99.48 0.71 -9.04 13 14 H -0.24 -8.21 7.11 99.48 0.71 -7.51 13 15 H 0.09 2.61 8.14 -2.39 -0.02 2.59 13 16 H 0.08 2.48 8.14 -2.39 -0.02 2.46 13 17 H 0.09 2.80 8.14 -2.38 -0.02 2.78 13 18 H 0.29 14.48 8.29 -92.71 -0.77 13.71 13 Total: -1.00 -65.89 178.72 6.11 -59.79 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.27 Total: 1.86 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 2.10 Total: -19.53 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -0.93 Total: -95.45 kcal Atomic # 8 Polarization: 12.66 SS G_CDS: 1.64 Total: 14.30 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -65.89 6.11 -59.79 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026439021.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.173 kcal (2) G-P(sol) polarization free energy of solvation -65.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds