Wall clock time and date at job start Mon Mar 30 2020 01:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30179 * 1 3 3 Si 1.86798 * 119.99863 * 2 1 4 4 H 1.48500 * 109.46968 * 274.14070 * 3 2 1 5 5 H 1.48496 * 109.47348 * 34.14179 * 3 2 1 6 6 H 1.48503 * 109.46673 * 154.14587 * 3 2 1 7 7 C 1.41204 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 341.17743 * 7 2 1 9 9 C 1.38885 * 120.00035 * 161.17932 * 7 2 1 10 10 C 1.37819 * 125.37112 * 340.18141 * 9 7 2 11 11 C 1.40324 * 112.41316 * 179.73224 * 10 9 7 12 12 O 1.21465 * 125.65611 * 180.28782 * 11 10 9 13 13 C 1.51151 * 108.69710 * 0.26143 * 11 10 9 14 14 C 1.51045 * 125.36859 * 160.36112 * 9 7 2 15 15 H 0.97007 * 120.00170 * 359.97438 * 1 2 3 16 16 H 1.08007 * 123.79637 * 359.97438 * 10 9 7 17 17 H 1.09005 * 110.39112 * 118.79619 * 13 11 10 18 18 H 1.08990 * 110.39822 * 241.08596 * 13 11 10 19 19 H 1.09000 * 110.54253 * 61.27221 * 14 9 7 20 20 H 1.09001 * 110.14847 * 299.01047 * 14 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3018 0.0000 0.0000 3 14 2.2357 1.6177 0.0000 4 1 2.3957 2.0969 -1.3964 5 1 1.4798 2.6258 0.7857 6 1 3.5744 1.4164 0.6106 7 6 2.0078 -1.2229 -0.0005 8 1 1.5110 -2.1333 0.3008 9 6 3.3409 -1.2549 -0.3886 10 6 3.9758 -0.2914 -1.1422 11 6 5.3267 -0.5949 -1.3706 12 8 6.1095 0.0888 -1.9993 13 6 5.6465 -1.9133 -0.7042 14 6 4.3227 -2.3531 -0.0544 15 1 -0.4851 0.8401 0.0004 16 1 3.4894 0.5992 -1.5120 17 1 5.9674 -2.6455 -1.4452 18 1 6.4175 -1.7784 0.0542 19 1 3.9915 -3.3029 -0.4742 20 1 4.4400 -2.4358 1.0261 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034529358.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:48 Heat of formation + Delta-G solvation = -48.312708 kcal Electronic energy + Delta-G solvation = -7781.430964 eV Core-core repulsion = 6135.503724 eV Total energy + Delta-G solvation = -1645.927240 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 152.058 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.30756 -35.31642 -33.57750 -29.32909 -26.50460 -23.88927 -19.50495 -18.44787 -16.50303 -15.62524 -14.54394 -13.91995 -13.40042 -12.88651 -12.03229 -11.91924 -11.45087 -11.02038 -10.98770 -10.57546 -10.41483 -9.72974 -9.39147 -8.03503 -7.82754 -7.44355 -5.04716 2.42308 3.11090 3.14503 3.29921 3.91136 4.17501 4.86920 5.58787 5.81318 6.05047 6.24607 6.45093 6.51772 6.77733 6.81143 7.24197 7.55513 7.70409 7.93850 8.32182 8.47322 9.48814 9.50257 Molecular weight = 152.06amu Principal moments of inertia in cm(-1) A = 0.071721 B = 0.024835 C = 0.019594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.308610 B = 1127.159024 C = 1428.635057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.236 1.236 7 C -0.382 4.382 8 H 0.098 0.902 9 C 0.090 3.910 10 C -0.510 4.510 11 C 0.377 3.623 12 O -0.569 6.569 13 C -0.175 4.175 14 C -0.093 4.093 15 H 0.299 0.701 16 H 0.101 0.899 17 H 0.075 0.925 18 H 0.076 0.924 19 H 0.070 0.930 20 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -1.590 2.847 3.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.142 4.142 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.158 1.158 7 C -0.406 4.406 8 H 0.116 0.884 9 C 0.085 3.915 10 C -0.532 4.532 11 C 0.274 3.726 12 O -0.462 6.462 13 C -0.213 4.213 14 C -0.130 4.130 15 H 0.110 0.890 16 H 0.118 0.882 17 H 0.093 0.907 18 H 0.094 0.906 19 H 0.089 0.911 20 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.825 -1.254 2.587 2.991 hybrid contribution -0.041 0.553 0.020 0.555 sum 0.784 -0.701 2.607 2.811 Atomic orbital electron populations 1.69373 1.08992 1.32240 1.27223 1.26732 0.94823 1.03415 0.89266 0.85820 0.80876 0.77089 0.79813 1.19028 1.22344 1.15830 1.19444 0.93360 0.96154 1.31652 0.88380 1.19725 0.91938 0.92209 0.87608 1.21454 0.98420 1.08460 1.24875 1.20180 0.88615 0.85639 0.78135 1.90374 1.56967 1.56489 1.42376 1.22381 0.97981 1.00208 1.00700 1.21057 0.93804 0.98099 1.00028 0.88982 0.88176 0.90677 0.90591 0.91146 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.31 13.90 55.62 0.77 -17.53 14 2 C 0.09 2.11 5.50 -17.13 -0.09 2.02 14 3 Si 0.94 21.30 24.56 -169.99 -4.18 17.12 14 4 H -0.26 -6.25 6.73 56.52 0.38 -5.87 14 5 H -0.30 -6.22 7.11 56.52 0.40 -5.82 14 6 H -0.24 -5.64 6.64 56.52 0.38 -5.26 14 7 C -0.38 -9.48 9.85 -38.22 -0.38 -9.86 14 8 H 0.10 2.40 8.06 -52.48 -0.42 1.98 14 9 C 0.09 2.19 5.57 -104.37 -0.58 1.61 14 10 C -0.51 -13.57 7.85 -38.95 -0.31 -13.88 14 11 C 0.38 9.90 7.47 -33.30 -0.25 9.65 14 12 O -0.57 -16.57 18.04 5.40 0.10 -16.47 14 13 C -0.17 -3.64 6.93 -27.20 -0.19 -3.82 14 14 C -0.09 -1.87 6.83 -27.25 -0.19 -2.06 14 15 H 0.30 6.44 8.28 -40.82 -0.34 6.11 14 16 H 0.10 2.77 4.20 -52.48 -0.22 2.55 14 17 H 0.07 1.42 8.14 -51.93 -0.42 0.99 14 18 H 0.08 1.43 8.14 -51.93 -0.42 1.01 14 19 H 0.07 1.27 8.14 -51.93 -0.42 0.85 14 20 H 0.07 1.33 8.14 -51.93 -0.42 0.90 14 LS Contribution 180.09 15.07 2.71 2.71 Total: -1.00 -28.97 180.09 -4.09 -33.06 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -1.52 Total: -2.55 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -1.98 Total: -16.35 kcal Atomic # 7 Polarization: -18.31 SS G_CDS: 0.77 Total: -17.53 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.10 Total: -16.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.18 Total: 17.12 kcal Total LS contribution 2.71 Total: 2.71 kcal Total: -28.97 -4.09 -33.06 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034529358.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.252 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds