Wall clock time and date at job start Mon Mar 30 2020 02:11:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 119.99772 * 2 1
4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1
5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1
6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1
7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1
10 10 H 1.09000 * 110.50743 * 59.30134 * 9 7 2
11 11 C 1.54984 * 110.56844 * 182.05467 * 9 7 2
12 12 C 1.55062 * 102.25702 * 155.53860 * 11 9 7
13 13 C 1.51847 * 104.52597 * 322.57072 * 12 11 9
14 14 O 1.20756 * 126.34249 * 203.71165 * 13 12 11
15 15 C 1.51452 * 107.31733 * 23.68557 * 13 12 11
16 16 H 0.97001 * 119.99667 * 180.02562 * 1 2 3
17 17 H 1.09001 * 110.83513 * 273.85788 * 11 9 7
18 18 H 1.08992 * 110.83297 * 37.44203 * 11 9 7
19 19 H 1.08995 * 110.48264 * 203.76141 * 12 11 9
20 20 H 1.09001 * 110.41174 * 81.34412 * 12 11 9
21 21 H 1.09000 * 109.98378 * 240.29481 * 15 13 12
22 22 H 1.08994 * 110.01463 * 119.01012 * 15 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3465 -0.0006
5 1 1.8903 2.3965 1.2125
6 1 1.8903 2.3965 -1.2124
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 1 0.6085 -2.5691 -0.8782
11 6 2.2348 -3.6957 0.0508
12 6 1.3594 -4.8150 0.6716
13 6 0.5039 -4.1013 1.7034
14 8 -0.0144 -4.6013 2.6727
15 6 0.4215 -2.6461 1.2919
16 1 -0.4850 -0.8401 0.0004
17 1 2.5649 -3.9695 -0.9512
18 1 3.0863 -3.4702 0.6927
19 1 1.9857 -5.5672 1.1511
20 1 0.7314 -5.2740 -0.0919
21 1 0.8377 -2.0132 2.0757
22 1 -0.6157 -2.3702 1.1022
RHF calculation, no. of doubly occupied orbitals= 28
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000034559663.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:11:12
Heat of formation + Delta-G solvation = -80.071591 kcal
Electronic energy + Delta-G solvation = -8211.198113 eV
Core-core repulsion = 6536.582226 eV
Total energy + Delta-G solvation = -1674.615887 eV
No. of doubly occupied orbitals = 28
Molecular weight
(most abundant/longest-lived isotopes) = 154.073 amu
Computer time = 0.08 seconds
Orbital eigenvalues (eV)
-40.63790 -37.58325 -34.36931 -29.65608 -28.54084 -25.44122 -21.72961 -20.29721
-18.96735 -17.12197 -16.43840 -15.74346 -15.52436 -15.15305 -14.22296 -13.86893
-13.48090 -12.64593 -12.52148 -12.32787 -11.89996 -11.83037 -11.35222 -10.80831
-10.53851 -10.25749 -8.57170 -6.31893 0.88747 1.56621 1.64166 1.80231
2.59121 3.20330 3.32038 3.76236 4.12112 4.29591 4.43131 4.68623
4.80113 4.90555 5.03378 5.07748 5.37697 5.61367 6.10240 6.24411
6.48004 6.67484 7.48801 8.81677
Molecular weight = 154.07amu
Principal moments of inertia in cm(-1)
A = 0.093661 B = 0.017116 C = 0.015715
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 298.877487 B = 1635.499661 C = 1781.313125
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.941 5.941
2 C -0.032 4.032
3 Si 1.116 2.884
4 H -0.270 1.270
5 H -0.285 1.285
6 H -0.282 1.282
7 C -0.606 4.606
8 H 0.053 0.947
9 C 0.021 3.979
10 H 0.015 0.985
11 C -0.098 4.098
12 C -0.166 4.166
13 C 0.371 3.629
14 O -0.498 6.498
15 C -0.171 4.171
16 H 0.263 0.737
17 H 0.083 0.917
18 H 0.063 0.937
19 H 0.108 0.892
20 H 0.120 0.880
21 H 0.069 0.931
22 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.313 -5.106 -0.822 6.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.231 4.231
3 Si 0.939 3.061
4 H -0.194 1.194
5 H -0.211 1.211
6 H -0.208 1.208
7 C -0.644 4.644
8 H 0.071 0.929
9 C 0.003 3.997
10 H 0.033 0.967
11 C -0.136 4.136
12 C -0.203 4.203
13 C 0.251 3.749
14 O -0.375 6.375
15 C -0.209 4.209
16 H 0.074 0.926
17 H 0.101 0.899
18 H 0.082 0.918
19 H 0.126 0.874
20 H 0.138 0.862
21 H 0.087 0.913
22 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 3.861 -3.737 -0.329 5.383
hybrid contribution -0.196 -1.367 0.039 1.381
sum 3.665 -5.104 -0.290 6.290
Atomic orbital electron populations
1.70870 1.07901 1.30598 1.48481 1.27174 0.96631 1.06388 0.92871
0.82923 0.74455 0.71564 0.77135 1.19447 1.21150 1.20754 1.22424
0.94516 0.92589 1.54847 0.92895 1.19617 0.93883 0.94989 0.91224
0.96730 1.22390 0.97124 0.93001 1.01035 1.22872 0.99461 0.99240
0.98737 1.25625 0.74569 0.91954 0.82724 1.90302 1.43448 1.75146
1.28643 1.22899 1.01475 0.94809 1.01756 0.92645 0.89855 0.91801
0.87379 0.86186 0.91305 0.91563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.68 13.44 21.45 0.29 -55.39 14
2 C -0.03 -1.77 5.34 84.65 0.45 -1.32 14
3 Si 1.12 48.99 29.90 68.60 2.05 51.04 14
4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 14
5 H -0.29 -12.36 7.11 99.48 0.71 -11.65 14
6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 14
7 C -0.61 -32.28 8.38 25.60 0.21 -32.06 14
8 H 0.05 2.77 7.77 -2.91 -0.02 2.74 14
9 C 0.02 1.00 2.43 -10.43 -0.03 0.98 14
10 H 0.01 0.72 8.00 -2.39 -0.02 0.70 14
11 C -0.10 -3.51 6.36 31.98 0.20 -3.31 14
12 C -0.17 -5.13 6.72 30.92 0.21 -4.92 14
13 C 0.37 14.77 7.89 29.71 0.23 15.01 14
14 O -0.50 -21.86 17.99 -1.44 -0.03 -21.89 14
15 C -0.17 -7.86 5.27 30.52 0.16 -7.70 14
16 H 0.26 15.45 5.57 -92.71 -0.52 14.93 14
17 H 0.08 2.65 8.14 -2.39 -0.02 2.63 14
18 H 0.06 2.30 8.04 -2.39 -0.02 2.29 14
19 H 0.11 2.79 8.14 -2.39 -0.02 2.77 14
20 H 0.12 3.18 8.14 -2.39 -0.02 3.16 14
21 H 0.07 3.46 7.82 -2.39 -0.02 3.45 14
22 H 0.07 3.20 6.94 -2.39 -0.02 3.18 14
Total: -1.00 -62.06 193.63 5.21 -56.85
By element:
Atomic # 1 Polarization: 1.26 SS G_CDS: 1.45 Total: 2.71 kcal
Atomic # 6 Polarization: -34.78 SS G_CDS: 1.45 Total: -33.33 kcal
Atomic # 7 Polarization: -55.68 SS G_CDS: 0.29 Total: -55.39 kcal
Atomic # 8 Polarization: -21.86 SS G_CDS: -0.03 Total: -21.89 kcal
Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal
Total: -62.06 5.21 -56.85 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000034559663.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.221 kcal
(2) G-P(sol) polarization free energy of solvation -62.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.283 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.08 seconds