Wall clock time and date at job start Mon Mar 30 2020 02:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 115.56189 * 2 1 4 4 C 1.53003 * 117.49641 * 214.31435 * 2 1 3 5 5 C 1.53002 * 117.49866 * 145.69317 * 2 1 3 6 6 H 1.08992 * 117.51659 * 214.96858 * 5 2 1 7 7 C 1.50702 * 117.49601 * 359.97438 * 5 2 1 8 8 O 1.21431 * 120.00164 * 30.01621 * 7 5 2 9 9 C 1.41024 * 119.99693 * 210.01229 * 7 5 2 10 10 H 1.08007 * 120.00033 * 6.43648 * 9 7 5 11 11 C 1.40454 * 120.00136 * 186.44175 * 9 7 5 12 12 N 1.30526 * 120.00034 * 184.74025 * 11 9 7 13 13 Si 1.86800 * 120.00030 * 5.01151 * 11 9 7 14 14 H 1.48496 * 109.47346 * 179.73051 * 13 11 9 15 15 H 1.48497 * 109.46807 * 299.72727 * 13 11 9 16 16 H 1.48496 * 109.47136 * 59.72396 * 13 11 9 17 17 H 1.09002 * 109.46362 * 274.30972 * 1 2 3 18 18 H 1.08999 * 109.46939 * 34.30320 * 1 2 3 19 19 H 1.08996 * 109.47551 * 154.31421 * 1 2 3 20 20 H 1.08997 * 117.50160 * 145.01340 * 4 2 1 21 21 H 1.09005 * 117.49849 * 0.02562 * 4 2 1 22 22 H 0.96996 * 119.99942 * 355.18477 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7651 5 6 2.2365 -1.1211 0.7649 6 1 3.1716 -0.8757 1.2682 7 6 1.3720 -2.1404 1.4612 8 8 0.2776 -2.4161 1.0129 9 6 1.8341 -2.7741 2.6332 10 1 2.7595 -2.4559 3.0902 11 6 1.0908 -3.8191 3.2062 12 7 1.4689 -4.3434 4.3401 13 14 -0.4345 -4.4636 2.3417 14 1 -1.0305 -5.5627 3.1430 15 1 -1.4227 -3.3647 2.1967 16 1 -0.0629 -4.9756 0.9983 17 1 -0.3632 0.0772 1.0248 18 1 -0.3633 0.8489 -0.5792 19 1 -0.3634 -0.9261 -0.4454 20 1 3.1714 -0.8752 -1.2685 21 1 1.6112 -1.8582 -1.2688 22 1 2.3002 -4.0603 4.7521 RHF calculation, no. of doubly occupied orbitals= 28 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034939692.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:57 Heat of formation + Delta-G solvation = -45.677500 kcal Electronic energy + Delta-G solvation = -8254.008356 eV Core-core repulsion = 6580.883909 eV Total energy + Delta-G solvation = -1673.124447 eV No. of doubly occupied orbitals = 28 Molecular weight (most abundant/longest-lived isotopes) = 154.073 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.36846 -35.22208 -33.01640 -28.25888 -26.83686 -22.79611 -20.37626 -18.61493 -17.24995 -15.38398 -14.21168 -13.90764 -13.01457 -12.84262 -12.33892 -11.97819 -11.47661 -11.16943 -10.81133 -10.36211 -10.20373 -9.39754 -9.35407 -9.16591 -9.05576 -7.69177 -6.94015 -5.17615 3.32803 3.64300 3.94097 4.04817 4.48225 4.62879 5.30293 5.44750 5.54969 5.90109 5.96496 6.24447 6.46771 6.52393 6.57543 6.69383 6.81255 7.17436 7.58084 7.88790 8.37047 8.65599 9.94055 10.10623 Molecular weight = 154.07amu Principal moments of inertia in cm(-1) A = 0.079626 B = 0.021553 C = 0.018771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.559265 B = 1298.793938 C = 1491.292790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.142 4.142 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.179 4.179 6 H 0.096 0.904 7 C 0.382 3.618 8 O -0.584 6.584 9 C -0.574 4.574 10 H 0.070 0.930 11 C 0.053 3.947 12 N -0.807 5.807 13 Si 1.136 2.864 14 H -0.325 1.325 15 H -0.279 1.279 16 H -0.289 1.289 17 H 0.055 0.945 18 H 0.037 0.963 19 H 0.075 0.925 20 H 0.083 0.917 21 H 0.095 0.905 22 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 4.488 -5.396 7.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.160 4.160 3 H 0.109 0.891 4 C -0.202 4.202 5 C -0.198 4.198 6 H 0.114 0.886 7 C 0.286 3.714 8 O -0.484 6.484 9 C -0.604 4.604 10 H 0.088 0.912 11 C -0.167 4.167 12 N -0.433 5.433 13 Si 0.969 3.031 14 H -0.258 1.258 15 H -0.206 1.206 16 H -0.216 1.216 17 H 0.074 0.926 18 H 0.056 0.944 19 H 0.094 0.906 20 H 0.101 0.899 21 H 0.113 0.887 22 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.148 3.380 -5.408 6.480 hybrid contribution 1.978 1.317 0.106 2.378 sum 0.829 4.697 -5.302 7.132 Atomic orbital electron populations 1.21277 0.92448 1.01366 1.01667 1.22153 0.96041 0.92890 1.04965 0.89090 1.22906 1.01577 1.01866 0.93835 1.22973 1.01765 1.01242 0.93829 0.88574 1.18971 0.85457 0.81614 0.85378 1.89853 1.23439 1.65771 1.69300 1.21889 1.09843 1.17994 1.10692 0.91204 1.27694 1.03699 0.92104 0.93246 1.70568 1.21148 1.38448 1.13181 0.82219 0.73842 0.74061 0.72989 1.25774 1.20630 1.21627 0.92628 0.94383 0.90594 0.89860 0.88677 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.57 37.16 0.32 -1.84 14 2 C -0.14 -2.73 6.41 -90.61 -0.58 -3.31 14 3 H 0.09 1.51 8.14 -51.93 -0.42 1.09 14 4 C -0.16 -3.15 9.74 -26.73 -0.26 -3.41 14 5 C -0.18 -3.99 6.06 -91.77 -0.56 -4.54 14 6 H 0.10 2.02 8.14 -51.93 -0.42 1.60 14 7 C 0.38 10.30 6.29 -33.25 -0.21 10.09 14 8 O -0.58 -16.41 9.47 5.43 0.05 -16.35 14 9 C -0.57 -16.40 9.66 -37.69 -0.36 -16.76 14 10 H 0.07 1.98 8.06 -52.48 -0.42 1.56 14 11 C 0.05 1.53 5.52 -17.27 -0.10 1.43 14 12 N -0.81 -23.01 13.64 55.57 0.76 -22.26 14 13 Si 1.14 29.69 25.97 -169.99 -4.41 25.28 14 14 H -0.33 -8.18 7.11 56.52 0.40 -7.78 14 15 H -0.28 -7.46 6.78 56.52 0.38 -7.08 14 16 H -0.29 -7.54 7.11 56.52 0.40 -7.14 14 17 H 0.05 1.16 8.08 -51.93 -0.42 0.74 14 18 H 0.04 0.61 8.14 -51.93 -0.42 0.19 14 19 H 0.08 1.62 6.54 -51.93 -0.34 1.28 14 20 H 0.08 1.34 8.14 -51.93 -0.42 0.92 14 21 H 0.09 1.91 8.03 -51.93 -0.42 1.49 14 22 H 0.28 7.67 8.72 -40.82 -0.36 7.31 14 LS Contribution 194.32 15.07 2.93 2.93 Total: -1.00 -29.68 194.32 -4.88 -34.57 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -2.46 Total: -5.81 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -1.75 Total: -18.35 kcal Atomic # 7 Polarization: -23.01 SS G_CDS: 0.76 Total: -22.26 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.05 Total: -16.35 kcal Atomic # 14 Polarization: 29.69 SS G_CDS: -4.41 Total: 25.28 kcal Total LS contribution 2.93 Total: 2.93 kcal Total: -29.68 -4.88 -34.57 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034939692.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.109 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds