Wall clock time and date at job start Mon Mar 30 2020 01:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34329 * 125.30802 * 2 1 4 4 C 1.46966 * 106.48894 * 180.26154 * 3 2 1 5 5 C 1.41351 * 127.10979 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99868 * 0.02562 * 5 4 3 7 7 C 1.39676 * 120.00081 * 179.97438 * 5 4 3 8 8 N 1.31049 * 120.00161 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47308 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46840 * 120.00360 * 9 7 5 12 12 H 1.48501 * 109.46789 * 240.00088 * 9 7 5 13 13 C 1.39262 * 105.78153 * 359.97438 * 4 3 2 14 14 N 1.34915 * 107.92511 * 0.02562 * 13 4 3 15 15 H 0.96998 * 124.79446 * 179.97438 * 14 13 4 16 16 H 1.08997 * 109.47244 * 269.72263 * 1 2 3 17 17 H 1.08994 * 109.47194 * 29.72459 * 1 2 3 18 18 H 1.08997 * 109.46942 * 149.72390 * 1 2 3 19 19 H 1.08004 * 126.75094 * 0.22545 * 3 2 1 20 20 H 0.96993 * 120.00433 * 179.97438 * 8 7 5 21 21 H 1.07994 * 126.03999 * 180.02562 * 13 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2833 1.0962 0.0000 4 6 3.6744 0.6221 -0.0064 5 6 4.8453 1.4140 -0.0082 6 1 4.7686 2.4913 -0.0042 7 6 6.1015 0.8033 -0.0140 8 7 6.1945 -0.5039 -0.0184 9 14 7.6488 1.8499 -0.0156 10 1 7.2744 3.2869 -0.0094 11 1 8.4548 1.5435 1.1934 12 1 8.4471 1.5511 -1.2316 13 6 3.6006 -0.7685 -0.0092 14 7 2.2968 -1.1152 -0.0055 15 1 1.9665 -2.0272 -0.0067 16 1 -0.3633 -0.0050 1.0276 17 1 -0.3633 0.8924 -0.5095 18 1 -0.3633 -0.8875 -0.5181 19 1 1.9507 2.1237 0.0034 20 1 7.0668 -0.9280 -0.0228 21 1 4.4390 -1.4493 -0.0136 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037624460.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:44 Heat of formation + Delta-G solvation = 28.252969 kcal Electronic energy + Delta-G solvation = -7590.778689 eV Core-core repulsion = 6045.890248 eV Total energy + Delta-G solvation = -1544.888441 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 151.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -38.89686 -33.25032 -30.22425 -29.34018 -25.64821 -23.61100 -19.20285 -18.57943 -16.14665 -15.54787 -14.28759 -13.24990 -12.59892 -12.34585 -11.88504 -11.48282 -11.28717 -11.01956 -10.80577 -10.61130 -9.56803 -9.38461 -9.08784 -7.15271 -6.40530 -6.21856 -3.80051 3.19808 3.29699 3.35975 3.87083 4.28916 4.48902 4.93721 5.83761 5.95396 6.02984 6.21427 6.48885 7.08672 7.31747 7.57145 7.67693 8.16067 8.31210 8.60469 9.06311 9.35529 9.47758 9.53847 10.78317 Molecular weight = 151.07amu Principal moments of inertia in cm(-1) A = 0.137999 B = 0.016427 C = 0.014797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 202.850746 B = 1704.132888 C = 1891.839208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 C -0.250 4.250 4 C 0.004 3.996 5 C -0.426 4.426 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.847 5.847 9 Si 0.910 3.090 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.281 1.281 13 C -0.109 4.109 14 N -0.573 5.573 15 H 0.385 0.615 16 H 0.051 0.949 17 H 0.063 0.937 18 H 0.045 0.955 19 H 0.107 0.893 20 H 0.266 0.734 21 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -0.704 -0.008 4.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.142 4.142 3 C -0.280 4.280 4 C -0.001 4.001 5 C -0.461 4.461 6 H 0.083 0.917 7 C -0.153 4.153 8 N -0.480 5.480 9 Si 0.737 3.263 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.207 1.207 13 C -0.237 4.237 14 N -0.170 5.170 15 H 0.217 0.783 16 H 0.070 0.930 17 H 0.082 0.918 18 H 0.065 0.935 19 H 0.126 0.874 20 H 0.077 0.923 21 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.971 -0.952 -0.010 4.083 hybrid contribution 0.668 0.072 0.004 0.672 sum -3.303 -0.880 -0.006 3.418 Atomic orbital electron populations 1.20100 0.90951 1.01148 1.00557 1.19691 0.91456 0.87793 1.15281 1.21566 0.94036 0.95132 1.17217 1.18435 0.90464 0.91186 1.00006 1.18803 0.89424 0.93474 1.44386 0.91686 1.25572 1.00028 0.94939 0.94784 1.69519 1.24558 1.09408 1.44549 0.86221 0.81577 0.80678 0.77793 1.19168 1.20669 1.20663 1.23216 0.83118 0.97662 1.19661 1.41390 1.07081 1.05687 1.62862 0.78283 0.93022 0.91818 0.93546 0.87444 0.92297 0.79993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.40 36.00 0.37 -0.81 14 2 C -0.03 -0.71 7.10 -81.82 -0.58 -1.29 14 3 C -0.25 -6.54 10.97 -37.43 -0.41 -6.95 14 4 C 0.00 0.13 6.12 -104.80 -0.64 -0.51 14 5 C -0.43 -12.65 9.44 -37.86 -0.36 -13.01 14 6 H 0.06 1.87 7.84 -52.49 -0.41 1.46 14 7 C 0.05 1.52 5.49 -17.35 -0.10 1.42 14 8 N -0.85 -23.98 10.38 55.53 0.58 -23.41 14 9 Si 0.91 21.00 29.56 -169.99 -5.02 15.98 14 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 13 C -0.11 -3.00 10.94 -15.82 -0.17 -3.18 14 14 N -0.57 -13.31 5.91 -8.45 -0.05 -13.36 14 15 H 0.39 7.35 8.96 -40.82 -0.37 6.98 14 16 H 0.05 0.80 8.14 -51.93 -0.42 0.38 14 17 H 0.06 1.00 8.14 -51.93 -0.42 0.58 14 18 H 0.05 0.69 8.14 -51.93 -0.42 0.26 14 19 H 0.11 2.61 8.06 -52.48 -0.42 2.18 14 20 H 0.27 6.94 8.30 -40.82 -0.34 6.60 14 21 H 0.18 5.18 5.78 -52.49 -0.30 4.88 14 LS Contribution 191.01 15.07 2.88 2.88 Total: -1.00 -31.11 191.01 -5.41 -36.52 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -1.91 Total: 5.72 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.88 Total: -24.33 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.53 Total: -36.77 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -31.11 -5.41 -36.52 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037624460.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.769 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds